Wall clock time and date at job start Fri Apr 10 2020 22:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 O 1.42962 * 109.47559 * 120.00218 * 2 1 3 5 5 C 1.43100 * 113.76742 * 61.20611 * 4 2 1 6 6 C 1.53263 * 108.94344 * 57.97073 * 5 4 2 7 7 C 1.53001 * 109.57311 * 65.28100 * 6 5 4 8 8 C 1.50694 * 109.57406 * 185.53819 * 6 5 4 9 9 O 1.21277 * 120.00255 * 358.50798 * 8 6 5 10 10 N 1.34780 * 119.99609 * 178.50772 * 8 6 5 11 11 C 1.46927 * 120.63403 * 5.34853 * 10 8 6 12 12 C 1.53188 * 108.77363 * 233.58230 * 11 10 8 13 13 C 1.53040 * 109.31430 * 305.35856 * 12 11 10 14 14 C 1.53047 * 109.53178 * 61.36811 * 13 12 11 15 15 H 1.08998 * 109.49618 * 58.58672 * 14 13 12 16 16 C 1.50700 * 109.49238 * 178.64917 * 14 13 12 17 17 H 1.08001 * 120.00170 * 120.00517 * 16 14 13 18 18 C 1.37879 * 120.00118 * 299.99532 * 16 14 13 19 19 N 1.31517 * 119.99900 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00086 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46890 * 60.00074 * 20 18 16 22 22 H 1.48493 * 109.47200 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47283 * 300.00564 * 20 18 16 24 24 C 1.46932 * 120.62919 * 185.06128 * 10 8 6 25 25 C 1.53262 * 108.94924 * 305.41431 * 6 5 4 26 26 O 1.42968 * 109.47197 * 240.00541 * 2 1 3 27 27 H 1.08995 * 109.47132 * 299.99424 * 1 2 3 28 28 H 1.09008 * 109.47478 * 59.99879 * 1 2 3 29 29 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46791 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47480 * 300.00110 * 3 2 1 32 32 H 1.09004 * 109.46886 * 60.00530 * 3 2 1 33 33 H 1.08993 * 109.55430 * 298.13418 * 5 4 2 34 34 H 1.09001 * 109.55809 * 177.80575 * 5 4 2 35 35 H 1.08999 * 109.47295 * 168.62435 * 7 6 5 36 36 H 1.09001 * 109.47545 * 288.62731 * 7 6 5 37 37 H 1.09004 * 109.47006 * 48.62989 * 7 6 5 38 38 H 1.09002 * 109.58345 * 353.37332 * 11 10 8 39 39 H 1.08997 * 109.58889 * 113.64913 * 11 10 8 40 40 H 1.09000 * 109.49888 * 65.31687 * 12 11 10 41 41 H 1.09005 * 109.49593 * 185.40696 * 12 11 10 42 42 H 1.08996 * 109.45644 * 181.38248 * 13 12 11 43 43 H 1.08994 * 109.46004 * 301.35073 * 13 12 11 44 44 H 0.97000 * 119.99737 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.58901 * 246.20753 * 24 10 8 46 46 H 1.08994 * 109.58439 * 6.63251 * 24 10 8 47 47 H 1.09004 * 109.55355 * 174.42311 * 25 6 5 48 48 H 1.08998 * 109.55962 * 294.75011 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0066 -0.6740 1.1672 5 6 1.6041 -2.0449 1.2463 6 6 2.1043 -2.7830 -0.0003 7 6 3.6341 -2.8106 -0.0003 8 6 1.5738 -4.1935 0.0013 9 8 0.8874 -4.5822 0.9225 10 7 1.8623 -5.0230 -1.0211 11 6 2.7863 -4.6069 -2.0849 12 6 2.0940 -4.7907 -3.4390 13 6 1.6012 -6.2342 -3.5638 14 6 0.5840 -6.5250 -2.4578 15 1 -0.2496 -5.8273 -2.5376 16 6 0.0745 -7.9360 -2.6014 17 1 0.2151 -8.6452 -1.7991 18 6 -0.5712 -8.3215 -3.7570 19 7 -0.7421 -7.4580 -4.7342 20 14 -1.2033 -10.0703 -3.9348 21 1 -2.1903 -10.3513 -2.8614 22 1 -1.8538 -10.2292 -5.2601 23 1 -0.0677 -11.0208 -3.8241 24 6 1.2635 -6.3630 -1.0896 25 6 1.6040 -2.0475 -1.2483 26 8 2.0065 -0.6738 -1.1674 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 0.5168 -2.1038 1.2935 34 1 2.0350 -2.5008 2.1377 35 1 3.9850 -3.5005 -0.7677 36 1 4.0156 -1.8110 -0.2086 37 1 3.9916 -3.1400 0.9753 38 1 3.0513 -3.5584 -1.9492 39 1 3.6872 -5.2193 -2.0466 40 1 1.2462 -4.1093 -3.5096 41 1 2.8008 -4.5770 -4.2409 42 1 1.1298 -6.3741 -4.5365 43 1 2.4462 -6.9160 -3.4683 44 1 -1.1960 -7.7294 -5.5473 45 1 2.0416 -7.1174 -0.9734 46 1 0.5234 -6.4735 -0.2972 47 1 2.0348 -2.5054 -2.1388 48 1 0.5167 -2.1066 -1.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:31 Heat of formation + Delta-G solvation = -137.498282 kcal Electronic energy + Delta-G solvation = -28540.101199 eV Core-core repulsion = 24787.677717 eV Total energy + Delta-G solvation = -3752.423483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.46072 -40.65180 -38.51157 -36.83200 -36.20461 -35.07883 -33.08989 -32.44448 -31.67309 -29.10074 -27.55996 -27.51754 -26.81102 -26.47432 -23.62242 -23.41060 -22.03281 -20.65225 -19.63347 -18.82982 -18.52581 -17.91286 -17.59180 -16.88724 -16.66873 -16.59093 -16.24086 -15.76609 -15.48811 -15.12030 -14.79305 -14.66587 -14.44693 -14.21029 -14.00730 -13.75587 -13.58520 -13.50537 -13.26348 -13.17566 -13.10293 -13.01095 -12.85138 -12.68749 -12.64875 -12.52219 -12.22410 -12.11150 -11.88674 -11.80404 -11.55648 -11.30931 -10.98292 -10.89307 -10.71429 -10.55332 -10.40498 -9.56713 -8.11512 -6.26486 1.41184 1.42161 1.44931 1.49965 1.93345 2.42437 2.45672 2.57898 3.15211 3.26703 3.40185 3.48786 3.70557 3.77148 3.86574 3.94730 4.15661 4.19562 4.30229 4.34535 4.44995 4.49812 4.53647 4.55031 4.62661 4.68969 4.72824 4.77074 4.79691 4.82113 4.86862 4.87806 4.93506 5.05308 5.09938 5.17967 5.23790 5.25918 5.44106 5.51097 5.60431 5.71562 5.91822 6.10509 6.12127 6.33304 6.43558 6.81979 7.04990 7.41642 8.91717 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.025014 B = 0.003632 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.103234 B = 7708.054259 C = 7834.423638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.248 3.752 3 C -0.122 4.122 4 O -0.383 6.383 5 C 0.086 3.914 6 C -0.139 4.139 7 C -0.143 4.143 8 C 0.520 3.480 9 O -0.586 6.586 10 N -0.598 5.598 11 C 0.086 3.914 12 C -0.130 4.130 13 C -0.105 4.105 14 C 0.043 3.957 15 H -0.011 1.011 16 C -0.540 4.540 17 H 0.052 0.948 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.953 3.047 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.130 3.870 25 C 0.061 3.939 26 O -0.378 6.378 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.262 0.738 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.127 0.873 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 16.682 5.755 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.172 3.828 3 C -0.179 4.179 4 O -0.303 6.303 5 C 0.009 3.991 6 C -0.143 4.143 7 C -0.200 4.200 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.329 5.329 11 C -0.035 4.035 12 C -0.168 4.168 13 C -0.143 4.143 14 C 0.024 3.976 15 H 0.007 0.993 16 C -0.578 4.578 17 H 0.070 0.930 18 C -0.180 4.180 19 N -0.550 5.550 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.194 1.194 24 C 0.007 3.993 25 C -0.015 4.015 26 O -0.299 6.299 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.144 0.856 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.161 16.686 6.043 19.971 hybrid contribution -1.335 -1.773 -0.201 2.228 sum 7.826 14.913 5.842 17.826 Atomic orbital electron populations 1.22868 0.95687 1.02811 1.05149 1.23250 0.91933 0.92174 0.75446 1.21654 1.02938 0.88730 1.04599 1.88140 1.76185 1.22703 1.43312 1.22363 0.99162 0.81038 0.96546 1.21903 1.00867 0.91660 0.99841 1.22089 0.89189 1.04763 1.03912 1.20651 0.79654 0.87394 0.81473 1.90644 1.41315 1.77944 1.36749 1.48271 1.45409 1.15674 1.23507 1.22649 0.92096 1.02715 0.86031 1.21979 1.00201 0.97664 0.96959 1.21421 0.97187 0.94127 1.01605 1.18940 0.93087 0.94896 0.90682 0.99332 1.21404 1.37501 0.97305 1.01629 0.93011 1.25647 0.95834 1.00967 0.95544 1.69989 1.42772 1.35784 1.06446 0.85694 0.78703 0.80630 0.77117 1.20242 1.20799 1.19359 1.21706 0.96640 0.81896 0.99026 1.23059 0.99380 0.81921 0.97164 1.88197 1.75957 1.22413 1.43299 0.89197 0.89254 0.93493 0.90835 0.88866 0.88927 0.92935 0.87683 0.89501 0.89523 0.91565 0.85990 0.89375 0.93290 0.88909 0.91763 0.94325 0.92917 0.91820 0.92783 0.85606 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.16 8.11 71.98 0.58 -3.58 16 2 C 0.25 5.27 1.50 30.59 0.05 5.32 16 3 C -0.12 -1.81 9.21 71.98 0.66 -1.15 16 4 O -0.38 -9.32 10.09 -126.22 -1.27 -10.59 16 5 C 0.09 2.31 4.60 72.07 0.33 2.64 16 6 C -0.14 -3.72 0.50 -52.75 -0.03 -3.75 16 7 C -0.14 -3.07 7.87 71.98 0.57 -2.50 16 8 C 0.52 18.26 6.49 87.65 0.57 18.83 16 9 O -0.59 -25.02 15.38 -3.02 -0.05 -25.06 16 10 N -0.60 -21.04 2.96 -818.09 -2.42 -23.47 16 11 C 0.09 2.35 4.05 86.36 0.35 2.70 16 12 C -0.13 -4.19 5.78 30.67 0.18 -4.01 16 13 C -0.11 -4.57 4.96 30.62 0.15 -4.42 16 14 C 0.04 2.13 2.26 -11.32 -0.03 2.10 16 15 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 16 C -0.54 -29.49 8.57 25.60 0.22 -29.27 16 17 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 18 C 0.02 1.06 5.30 84.65 0.45 1.51 16 19 N -0.91 -51.27 11.31 21.45 0.24 -51.03 16 20 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 C 0.13 5.58 5.67 86.50 0.49 6.07 16 25 C 0.06 1.57 4.96 72.07 0.36 1.92 16 26 O -0.38 -8.93 9.71 -126.22 -1.23 -10.16 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.05 1.13 5.12 -2.39 -0.01 1.12 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.05 1.54 6.36 -2.39 -0.02 1.53 16 34 H 0.11 2.79 8.10 -2.39 -0.02 2.77 16 35 H 0.09 1.68 4.68 -2.39 -0.01 1.67 16 36 H 0.09 1.74 7.50 -2.39 -0.02 1.72 16 37 H 0.07 1.40 8.07 -2.38 -0.02 1.38 16 38 H 0.12 2.68 2.57 -2.39 -0.01 2.67 16 39 H 0.09 2.13 8.13 -2.39 -0.02 2.11 16 40 H 0.05 1.67 7.83 -2.39 -0.02 1.66 16 41 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 43 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 45 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.05 2.57 7.04 -2.39 -0.02 2.55 16 47 H 0.13 3.00 4.45 -2.38 -0.01 2.99 16 48 H 0.05 1.41 6.54 -2.39 -0.02 1.39 16 Total: -1.00 -65.35 351.91 3.16 -62.19 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.96 Total: 20.52 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.90 Total: -7.59 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.18 Total: -74.50 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -2.55 Total: -45.82 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.35 3.16 -62.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.307 kcal (2) G-P(sol) polarization free energy of solvation -65.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds