Wall clock time and date at job start Fri Apr 10 2020 22:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00254 * 2 1 4 4 N 1.46496 * 109.47159 * 124.99628 * 3 2 1 5 5 C 1.46504 * 120.00451 * 270.00236 * 4 3 2 6 6 C 1.50700 * 109.47175 * 270.00259 * 5 4 3 7 7 H 1.08003 * 119.99598 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00201 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99940 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00209 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46832 * 89.99691 * 10 8 6 12 12 H 1.48496 * 109.46964 * 210.00129 * 10 8 6 13 13 H 1.48497 * 109.46767 * 330.00220 * 10 8 6 14 14 C 1.34783 * 120.00075 * 90.00265 * 4 3 2 15 15 O 1.21276 * 120.00087 * 179.97438 * 14 4 3 16 16 C 1.50700 * 119.99444 * 359.97438 * 14 4 3 17 17 C 1.53003 * 109.46858 * 179.97438 * 16 14 4 18 18 C 1.53000 * 109.47024 * 180.02562 * 17 16 14 19 19 O 1.42896 * 109.46947 * 179.97438 * 18 17 16 20 20 C 1.42899 * 114.00352 * 180.02562 * 19 18 17 21 21 C 1.53175 * 109.54545 * 269.56219 * 20 19 18 22 22 C 1.53094 * 109.16661 * 183.14980 * 21 20 19 23 23 O 1.42898 * 109.41211 * 57.60371 * 22 21 20 24 24 C 1.42897 * 114.10001 * 298.84343 * 23 22 21 25 25 C 1.53089 * 109.41656 * 61.16248 * 24 23 22 26 26 H 1.07997 * 120.00145 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.00232 * 180.02562 * 1 2 3 28 28 H 1.08006 * 119.99969 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46841 * 5.00014 * 3 2 1 30 30 H 1.08995 * 109.47346 * 244.99861 * 3 2 1 31 31 H 1.09000 * 109.46731 * 29.99759 * 5 4 3 32 32 H 1.08990 * 109.47568 * 149.99930 * 5 4 3 33 33 H 0.96995 * 119.99847 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47009 * 60.00264 * 16 14 4 35 35 H 1.08994 * 109.47480 * 299.99706 * 16 14 4 36 36 H 1.09000 * 109.46988 * 60.00382 * 17 16 14 37 37 H 1.09001 * 109.47299 * 300.00044 * 17 16 14 38 38 H 1.09000 * 109.47001 * 60.00298 * 18 17 16 39 39 H 1.09001 * 109.47043 * 300.00109 * 18 17 16 40 40 H 1.09004 * 109.61153 * 29.77680 * 20 19 18 41 41 H 1.09004 * 109.52259 * 303.05246 * 21 20 19 42 42 H 1.09006 * 109.52330 * 63.24079 * 21 20 19 43 43 H 1.09006 * 109.47665 * 297.62062 * 22 21 20 44 44 H 1.08993 * 109.47955 * 177.58818 * 22 21 20 45 45 H 1.09002 * 109.48425 * 301.17758 * 24 23 22 46 46 H 1.09001 * 109.49443 * 181.15303 * 24 23 22 47 47 H 1.08997 * 109.52675 * 182.48845 * 25 24 23 48 48 H 1.08995 * 109.52428 * 62.29514 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8368 1.6368 8 6 2.5184 4.0667 3.6082 9 7 1.9581 3.4661 4.6354 10 14 2.8728 5.8995 3.6774 11 1 1.7007 6.6501 3.1599 12 1 3.1361 6.3000 5.0828 13 1 4.0634 6.2051 2.8442 14 6 4.2497 0.8661 0.9825 15 8 5.0199 0.8887 1.9190 16 6 4.6969 0.3172 -0.3479 17 6 6.1535 -0.1402 -0.2472 18 6 6.6077 -0.6968 -1.5981 19 8 7.9682 -1.1235 -1.5042 20 6 8.4935 -1.6625 -2.7190 21 6 8.2514 -3.1745 -2.7556 22 6 8.8862 -3.7547 -4.0222 23 8 10.2810 -3.4446 -4.0392 24 6 10.5675 -2.0448 -4.0538 25 6 10.0003 -1.3960 -2.7885 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4025 -0.9313 31 1 1.4887 1.6966 2.5459 32 1 3.0988 1.3603 3.2260 33 1 1.7293 3.9748 5.4289 34 1 4.6120 1.0936 -1.1083 35 1 4.0678 -0.5297 -0.6215 36 1 6.2388 -0.9164 0.5132 37 1 6.7823 0.7071 0.0262 38 1 6.5224 0.0797 -2.3582 39 1 5.9788 -1.5440 -1.8719 40 1 8.0005 -1.1936 -3.5706 41 1 8.7023 -3.6371 -1.8776 42 1 7.1793 -3.3717 -2.7623 43 1 8.4067 -3.3216 -4.9002 44 1 8.7541 -4.8365 -4.0322 45 1 10.1101 -1.5892 -4.9322 46 1 11.6466 -1.8946 -4.0869 47 1 10.1790 -0.3212 -2.8188 48 1 10.4865 -1.8224 -1.9112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868511071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:34 Heat of formation + Delta-G solvation = -123.866691 kcal Electronic energy + Delta-G solvation = -25657.409584 eV Core-core repulsion = 21905.577212 eV Total energy + Delta-G solvation = -3751.832372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.94013 -39.17174 -37.75789 -35.71470 -33.96884 -33.15700 -32.21738 -31.99532 -31.52230 -28.22828 -26.57480 -25.36124 -24.50535 -23.98377 -22.88451 -21.43202 -20.60706 -19.93310 -18.38276 -17.24962 -16.62665 -16.52439 -16.45418 -16.09606 -15.86310 -15.44965 -15.22180 -14.92297 -14.54850 -14.29030 -14.22601 -13.88004 -13.52409 -13.21515 -12.77403 -12.57619 -12.51114 -12.14402 -11.93230 -11.73096 -11.66051 -11.64447 -11.41633 -11.23058 -11.06317 -10.96678 -10.87442 -10.77317 -10.65345 -10.58128 -10.18157 -10.05943 -9.66380 -9.63518 -9.20676 -8.89674 -8.42853 -7.68194 -6.03566 -4.08338 2.42688 3.27910 3.29952 3.36668 3.39722 3.45639 3.50708 4.05892 4.36515 4.42183 4.45924 4.57269 4.70372 4.80068 4.93510 4.97475 4.98497 5.06167 5.15114 5.18250 5.26754 5.27254 5.30275 5.37180 5.40709 5.44666 5.48323 5.54110 5.61622 5.64233 5.77632 5.82313 5.86485 5.99359 6.17232 6.24485 6.41895 6.76872 6.77268 6.89466 7.07269 7.10635 7.46270 7.55889 7.92942 8.24375 8.41978 8.90988 9.10399 9.56694 11.04563 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002412 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.076278 B =11605.932215 C =12717.630974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.136 3.864 4 N -0.595 5.595 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.505 3.495 15 O -0.538 6.538 16 C -0.137 4.137 17 C -0.102 4.102 18 C 0.064 3.936 19 O -0.376 6.376 20 C 0.089 3.911 21 C -0.180 4.180 22 C 0.064 3.936 23 O -0.383 6.383 24 C 0.064 3.936 25 C -0.155 4.155 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.097 0.903 45 H 0.051 0.949 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.960 -12.283 -20.550 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.292 3.708 15 O -0.416 6.416 16 C -0.178 4.178 17 C -0.140 4.140 18 C -0.013 4.013 19 O -0.295 6.295 20 C 0.031 3.969 21 C -0.218 4.218 22 C -0.013 4.013 23 O -0.302 6.302 24 C -0.013 4.013 25 C -0.193 4.193 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.100 0.900 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.547 -12.336 -19.663 24.736 hybrid contribution -0.501 1.215 -0.082 1.317 sum 8.045 -11.121 -19.745 24.048 Atomic orbital electron populations 1.23819 0.95864 1.01754 1.00644 1.23436 0.96394 0.99064 0.99851 1.20572 0.93130 0.95264 0.89797 1.48240 1.10559 1.60304 1.13552 1.19264 0.95345 0.93751 0.78865 1.21431 1.40437 0.93341 1.01248 0.92503 1.24940 0.95100 0.98762 0.95346 1.69936 1.42072 1.36138 1.05200 0.86502 0.78574 0.85011 0.77370 1.20674 1.21078 1.19891 1.20273 0.82308 0.78645 0.89616 1.90681 1.52503 1.56277 1.42113 1.21604 0.97010 1.01806 0.97361 1.21214 0.94744 1.02459 0.95607 1.22607 0.82516 0.97619 0.98543 1.87968 1.27238 1.81152 1.33174 1.22052 0.94434 0.92696 0.87748 1.22750 1.02029 0.96861 1.00143 1.22561 0.81671 1.00985 0.96093 1.87942 1.23890 1.23554 1.94783 1.22586 1.01263 0.81424 0.95999 1.22305 0.94627 1.02322 1.00016 0.88285 0.88811 0.87829 0.89522 0.90788 0.95043 0.93919 0.92733 0.89444 0.89599 0.90410 0.90270 0.93390 0.93496 0.92190 0.89949 0.90606 0.93129 0.88511 0.93051 0.88251 0.90045 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.90 16 2 C -0.17 -2.32 9.74 -36.03 -0.35 -2.67 16 3 C 0.14 2.16 5.65 -5.20 -0.03 2.13 16 4 N -0.60 -12.49 2.44 -176.44 -0.43 -12.92 16 5 C 0.25 6.50 5.16 -5.19 -0.03 6.47 16 6 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 7 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 10 Si 0.90 21.97 29.54 -169.99 -5.02 16.94 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.51 10.38 7.67 -10.98 -0.08 10.29 16 15 O -0.54 -13.64 15.56 5.56 0.09 -13.56 16 16 C -0.14 -1.94 4.25 -27.88 -0.12 -2.06 16 17 C -0.10 -1.45 4.87 -26.73 -0.13 -1.58 16 18 C 0.06 0.70 5.76 37.16 0.21 0.92 16 19 O -0.38 -4.62 10.00 -35.23 -0.35 -4.97 16 20 C 0.09 0.83 2.70 -26.55 -0.07 0.75 16 21 C -0.18 -1.50 5.76 -26.59 -0.15 -1.65 16 22 C 0.06 0.46 6.84 37.21 0.25 0.72 16 23 O -0.38 -3.50 10.76 -35.23 -0.38 -3.88 16 24 C 0.06 0.46 6.84 37.20 0.25 0.71 16 25 C -0.15 -1.31 5.79 -26.59 -0.15 -1.46 16 26 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 27 H 0.09 1.02 8.06 -52.48 -0.42 0.60 16 28 H 0.10 1.33 7.83 -52.48 -0.41 0.92 16 29 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 30 H 0.07 0.95 6.44 -51.93 -0.33 0.62 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.09 1.06 7.40 -51.93 -0.38 0.68 16 35 H 0.09 1.00 7.77 -51.93 -0.40 0.60 16 36 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 39 H 0.05 0.44 8.00 -51.93 -0.42 0.03 16 40 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.57 8.00 -51.93 -0.42 0.15 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -34.28 392.85 -8.41 -42.69 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.57 Total: -1.20 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.40 Total: -2.97 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.31 Total: -38.98 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.64 Total: -22.41 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.28 -8.41 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868511071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.177 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds