Wall clock time and date at job start Fri Apr 10 2020 22:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00254 * 2 1 4 4 N 1.46496 * 109.47159 * 124.99628 * 3 2 1 5 5 C 1.46504 * 120.00451 * 270.00236 * 4 3 2 6 6 C 1.50700 * 109.47175 * 270.00259 * 5 4 3 7 7 H 1.08003 * 119.99598 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00201 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99940 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00209 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46832 * 89.99691 * 10 8 6 12 12 H 1.48496 * 109.46964 * 210.00129 * 10 8 6 13 13 H 1.48497 * 109.46767 * 330.00220 * 10 8 6 14 14 C 1.34783 * 120.00075 * 90.00265 * 4 3 2 15 15 O 1.21276 * 120.00087 * 179.97438 * 14 4 3 16 16 C 1.50700 * 119.99444 * 359.97438 * 14 4 3 17 17 C 1.53003 * 109.46858 * 179.97438 * 16 14 4 18 18 C 1.53000 * 109.47024 * 180.02562 * 17 16 14 19 19 O 1.42896 * 109.46947 * 179.97438 * 18 17 16 20 20 C 1.42899 * 114.00352 * 180.02562 * 19 18 17 21 21 C 1.53175 * 109.54545 * 269.56219 * 20 19 18 22 22 C 1.53094 * 109.16661 * 183.14980 * 21 20 19 23 23 O 1.42898 * 109.41211 * 57.60371 * 22 21 20 24 24 C 1.42897 * 114.10001 * 298.84343 * 23 22 21 25 25 C 1.53089 * 109.41656 * 61.16248 * 24 23 22 26 26 H 1.07997 * 120.00145 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.00232 * 180.02562 * 1 2 3 28 28 H 1.08006 * 119.99969 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46841 * 5.00014 * 3 2 1 30 30 H 1.08995 * 109.47346 * 244.99861 * 3 2 1 31 31 H 1.09000 * 109.46731 * 29.99759 * 5 4 3 32 32 H 1.08990 * 109.47568 * 149.99930 * 5 4 3 33 33 H 0.96995 * 119.99847 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47009 * 60.00264 * 16 14 4 35 35 H 1.08994 * 109.47480 * 299.99706 * 16 14 4 36 36 H 1.09000 * 109.46988 * 60.00382 * 17 16 14 37 37 H 1.09001 * 109.47299 * 300.00044 * 17 16 14 38 38 H 1.09000 * 109.47001 * 60.00298 * 18 17 16 39 39 H 1.09001 * 109.47043 * 300.00109 * 18 17 16 40 40 H 1.09004 * 109.61153 * 29.77680 * 20 19 18 41 41 H 1.09004 * 109.52259 * 303.05246 * 21 20 19 42 42 H 1.09006 * 109.52330 * 63.24079 * 21 20 19 43 43 H 1.09006 * 109.47665 * 297.62062 * 22 21 20 44 44 H 1.08993 * 109.47955 * 177.58818 * 22 21 20 45 45 H 1.09002 * 109.48425 * 301.17758 * 24 23 22 46 46 H 1.09001 * 109.49443 * 181.15303 * 24 23 22 47 47 H 1.08997 * 109.52675 * 182.48845 * 25 24 23 48 48 H 1.08995 * 109.52428 * 62.29514 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8368 1.6368 8 6 2.5184 4.0667 3.6082 9 7 1.9581 3.4661 4.6354 10 14 2.8728 5.8995 3.6774 11 1 1.7007 6.6501 3.1599 12 1 3.1361 6.3000 5.0828 13 1 4.0634 6.2051 2.8442 14 6 4.2497 0.8661 0.9825 15 8 5.0199 0.8887 1.9190 16 6 4.6969 0.3172 -0.3479 17 6 6.1535 -0.1402 -0.2472 18 6 6.6077 -0.6968 -1.5981 19 8 7.9682 -1.1235 -1.5042 20 6 8.4935 -1.6625 -2.7190 21 6 8.2514 -3.1745 -2.7556 22 6 8.8862 -3.7547 -4.0222 23 8 10.2810 -3.4446 -4.0392 24 6 10.5675 -2.0448 -4.0538 25 6 10.0003 -1.3960 -2.7885 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4025 -0.9313 31 1 1.4887 1.6966 2.5459 32 1 3.0988 1.3603 3.2260 33 1 1.7293 3.9748 5.4289 34 1 4.6120 1.0936 -1.1083 35 1 4.0678 -0.5297 -0.6215 36 1 6.2388 -0.9164 0.5132 37 1 6.7823 0.7071 0.0262 38 1 6.5224 0.0797 -2.3582 39 1 5.9788 -1.5440 -1.8719 40 1 8.0005 -1.1936 -3.5706 41 1 8.7023 -3.6371 -1.8776 42 1 7.1793 -3.3717 -2.7623 43 1 8.4067 -3.3216 -4.9002 44 1 8.7541 -4.8365 -4.0322 45 1 10.1101 -1.5892 -4.9322 46 1 11.6466 -1.8946 -4.0869 47 1 10.1790 -0.3212 -2.8188 48 1 10.4865 -1.8224 -1.9112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868511071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:34 Heat of formation + Delta-G solvation = -146.147116 kcal Electronic energy + Delta-G solvation = -25658.375736 eV Core-core repulsion = 21905.577212 eV Total energy + Delta-G solvation = -3752.798524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83682 -40.52854 -38.55791 -37.24792 -35.29911 -34.76149 -33.65286 -33.03487 -32.09445 -29.99127 -27.86117 -26.82018 -25.32880 -24.71355 -24.42710 -22.62453 -21.32251 -21.05538 -19.86570 -18.65218 -18.11111 -17.77917 -17.23644 -17.22044 -16.94771 -16.75395 -16.16518 -16.14594 -15.79642 -15.62497 -15.04451 -14.98755 -14.53393 -14.38442 -14.17956 -13.92444 -13.67979 -13.42666 -13.23610 -13.02796 -12.87967 -12.85409 -12.55117 -12.49344 -12.37665 -12.25826 -12.23431 -12.15091 -11.85015 -11.68795 -11.66115 -11.32324 -10.67243 -10.65476 -10.59537 -10.42474 -10.29410 -9.46050 -8.23266 -6.38249 1.33978 1.35745 1.38590 1.48854 1.85137 2.30335 2.40633 2.72911 2.97379 3.06235 3.67081 3.76132 3.79784 3.97049 4.01184 4.05494 4.07477 4.14838 4.24781 4.27100 4.34753 4.41204 4.45860 4.53795 4.56080 4.60030 4.66024 4.72813 4.76798 4.84225 4.87847 5.02328 5.05459 5.08105 5.10319 5.14363 5.20711 5.23046 5.30510 5.52456 5.73025 5.76987 5.97745 6.05856 6.23367 6.32051 6.69267 6.79482 7.27771 7.49519 8.83976 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002412 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.076278 B =11605.932215 C =12717.630974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.183 4.183 3 C 0.132 3.868 4 N -0.601 5.601 5 C 0.263 3.737 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.493 3.507 15 O -0.601 6.601 16 C -0.119 4.119 17 C -0.099 4.099 18 C 0.070 3.930 19 O -0.406 6.406 20 C 0.082 3.918 21 C -0.177 4.177 22 C 0.063 3.937 23 O -0.405 6.405 24 C 0.065 3.935 25 C -0.155 4.155 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.020 0.980 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.085 0.915 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.326 -12.140 -23.954 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C 0.010 3.990 4 N -0.331 5.331 5 C 0.142 3.858 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.197 1.197 14 C 0.282 3.718 15 O -0.483 6.483 16 C -0.158 4.158 17 C -0.137 4.137 18 C -0.006 4.006 19 O -0.326 6.326 20 C 0.025 3.975 21 C -0.215 4.215 22 C -0.014 4.014 23 O -0.324 6.324 24 C -0.012 4.012 25 C -0.193 4.193 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.103 0.897 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.883 -12.209 -23.126 27.313 hybrid contribution -0.335 1.127 1.007 1.548 sum 7.548 -11.082 -22.120 25.866 Atomic orbital electron populations 1.24044 0.95675 1.02769 0.98569 1.23360 0.96738 0.98422 1.01636 1.20860 0.92698 0.96233 0.89194 1.48251 1.11918 1.59842 1.13053 1.18667 0.93714 0.92725 0.80713 1.21711 1.40466 0.94422 1.01433 0.92754 1.25892 0.94694 1.03890 0.94860 1.70060 1.42882 1.38139 1.05825 0.85401 0.78907 0.78987 0.77436 1.18642 1.20735 1.19721 1.21483 0.81322 0.77525 0.91437 1.90648 1.54119 1.58677 1.44809 1.21568 0.97084 1.03645 0.93546 1.21122 0.94596 1.00729 0.97246 1.22544 0.82493 0.99033 0.96534 1.87938 1.27922 1.81614 1.35143 1.22268 0.94718 0.93261 0.87258 1.22722 1.02658 0.96167 0.99952 1.22688 0.80879 1.01778 0.96046 1.87915 1.25078 1.24613 1.94831 1.22689 1.02092 0.80622 0.95763 1.22320 0.94384 1.02578 1.00029 0.88517 0.86614 0.86449 0.90749 0.86924 0.96207 0.98917 0.92434 0.86227 0.85934 0.92905 0.93177 0.91185 0.91137 0.90163 0.92104 0.89471 0.91258 0.87510 0.91221 0.87225 0.89651 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 14.32 67.78 0.97 -3.00 16 2 C -0.18 -4.61 9.74 25.65 0.25 -4.36 16 3 C 0.13 3.96 5.65 85.63 0.48 4.44 16 4 N -0.60 -25.43 2.44 -830.52 -2.03 -27.46 16 5 C 0.26 14.49 5.16 85.63 0.44 14.94 16 6 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 7 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.32 5.46 84.65 0.46 0.78 16 9 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 10 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 11 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 14 C 0.49 20.47 7.67 87.66 0.67 21.14 16 15 O -0.60 -32.13 15.56 -3.02 -0.05 -32.17 16 16 C -0.12 -3.08 4.25 29.85 0.13 -2.96 16 17 C -0.10 -2.74 4.87 30.60 0.15 -2.59 16 18 C 0.07 1.37 5.76 71.98 0.41 1.78 16 19 O -0.41 -9.56 10.00 -148.98 -1.49 -11.05 16 20 C 0.08 1.38 2.70 30.71 0.08 1.46 16 21 C -0.18 -2.66 5.76 30.68 0.18 -2.48 16 22 C 0.06 0.77 6.84 72.01 0.49 1.26 16 23 O -0.41 -6.78 10.76 -148.98 -1.60 -8.38 16 24 C 0.06 0.81 6.84 72.01 0.49 1.31 16 25 C -0.16 -2.49 5.79 30.68 0.18 -2.31 16 26 H 0.10 2.26 7.84 -2.91 -0.02 2.23 16 27 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.12 2.66 7.83 -2.91 -0.02 2.63 16 29 H 0.07 2.40 7.72 -2.39 -0.02 2.38 16 30 H 0.11 2.47 6.44 -2.39 -0.02 2.45 16 31 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 32 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.12 2.40 7.40 -2.39 -0.02 2.38 16 35 H 0.12 2.35 7.77 -2.39 -0.02 2.33 16 36 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 37 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 38 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 39 H 0.07 1.06 8.00 -2.39 -0.02 1.04 16 40 H 0.08 1.02 7.79 -2.38 -0.02 1.00 16 41 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.09 1.08 8.00 -2.38 -0.02 1.07 16 43 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -79.85 392.85 3.68 -76.17 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.90 Total: 14.34 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 5.63 Total: -2.01 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -1.74 Total: -84.33 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -3.14 Total: -51.60 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -79.85 3.68 -76.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868511071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.976 kcal (2) G-P(sol) polarization free energy of solvation -79.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds