Wall clock time and date at job start Fri Apr 10 2020 22:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46722 * 2 1 4 4 C 1.50694 * 109.49927 * 299.99819 * 3 2 1 5 5 O 1.20826 * 120.00182 * 240.00142 * 4 3 2 6 6 O 1.34233 * 120.00076 * 60.00113 * 4 3 2 7 7 C 1.45198 * 116.99936 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47353 * 60.00067 * 7 6 4 9 9 C 1.53001 * 109.47090 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.47283 * 299.99738 * 7 6 4 11 11 C 1.53046 * 109.49564 * 179.97438 * 3 2 1 12 12 C 1.53097 * 109.50485 * 301.38336 * 11 3 2 13 13 C 1.53197 * 109.33082 * 298.65520 * 12 11 3 14 14 N 1.46929 * 108.77503 * 54.63422 * 13 12 11 15 15 C 1.34773 * 120.62881 * 126.41540 * 14 13 12 16 16 O 1.21693 * 120.00125 * 354.67646 * 15 14 13 17 17 C 1.46374 * 119.99957 * 174.68043 * 15 14 13 18 18 H 1.08002 * 119.99880 * 348.07752 * 17 15 14 19 19 C 1.40057 * 119.99981 * 168.08395 * 17 15 14 20 20 N 1.30670 * 119.99787 * 171.18452 * 19 17 15 21 21 Si 1.86794 * 120.00061 * 351.18018 * 19 17 15 22 22 H 1.48504 * 109.46939 * 84.64586 * 21 19 17 23 23 H 1.48498 * 109.47301 * 204.64414 * 21 19 17 24 24 H 1.48499 * 109.47236 * 324.64864 * 21 19 17 25 25 C 1.46922 * 118.74088 * 306.39390 * 14 13 12 26 26 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47686 * 299.99845 * 1 2 3 28 28 H 1.09003 * 109.47195 * 60.00012 * 1 2 3 29 29 H 1.08996 * 109.47240 * 239.99894 * 2 1 3 30 30 H 1.08994 * 109.47111 * 119.99797 * 2 1 3 31 31 H 1.09000 * 109.46768 * 59.99654 * 8 7 6 32 32 H 1.09001 * 109.47190 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.46979 * 300.00117 * 8 7 6 34 34 H 1.08994 * 109.47232 * 59.99479 * 9 7 6 35 35 H 1.09001 * 109.47331 * 179.97438 * 9 7 6 36 36 H 1.09005 * 109.46834 * 299.99849 * 9 7 6 37 37 H 1.09007 * 109.46989 * 60.00194 * 10 7 6 38 38 H 1.09002 * 109.47583 * 179.97438 * 10 7 6 39 39 H 1.08991 * 109.47339 * 300.00685 * 10 7 6 40 40 H 1.09000 * 109.45268 * 61.43617 * 11 3 2 41 41 H 1.08996 * 109.45647 * 181.38686 * 11 3 2 42 42 H 1.08994 * 109.49035 * 178.70090 * 12 11 3 43 43 H 1.09000 * 109.51759 * 58.62908 * 12 11 3 44 44 H 1.09002 * 109.58332 * 294.84976 * 13 12 11 45 45 H 1.09001 * 109.70681 * 174.49051 * 13 12 11 46 46 H 0.96997 * 119.99992 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.58970 * 293.82219 * 25 14 13 48 48 H 1.08994 * 109.58925 * 173.39194 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5379 2.1535 -1.2302 5 8 2.3233 2.6128 -2.0253 6 8 0.2183 2.2765 -1.4428 7 6 -0.1931 2.9727 -2.6488 8 6 0.3539 2.2374 -3.8740 9 6 -1.7209 3.0137 -2.7180 10 6 0.3543 4.4013 -2.6248 11 6 3.5704 1.4433 0.0006 12 6 4.0814 0.6922 1.2330 13 6 3.5964 1.4057 2.4989 14 7 2.1344 1.5381 2.4365 15 6 1.3609 1.0937 3.4468 16 8 1.8625 0.4908 4.3773 17 6 -0.0824 1.3362 3.4247 18 1 -0.5028 2.0285 2.7102 19 6 -0.9182 0.6706 4.3302 20 7 -2.1761 1.0104 4.4293 21 14 -0.2349 -0.7028 5.3961 22 1 0.3925 -0.1216 6.6101 23 1 -1.3372 -1.6138 5.7963 24 1 0.7832 -1.4646 4.6292 25 6 1.5318 2.1645 1.2520 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 -0.0361 1.2197 -3.8910 32 1 0.0448 2.7599 -4.7793 33 1 1.4424 2.2086 -3.8244 34 1 -2.1103 3.5377 -1.8452 35 1 -2.0298 3.5368 -3.6231 36 1 -2.1113 1.9961 -2.7349 37 1 1.4429 4.3725 -2.5753 38 1 0.0459 4.9238 -3.5303 39 1 -0.0353 4.9251 -1.7520 40 1 3.9340 0.9519 -0.9018 41 1 3.9329 2.4709 0.0255 42 1 5.1711 0.6730 1.2211 43 1 3.6994 -0.3286 1.2216 44 1 4.0507 2.3948 2.5577 45 1 3.8733 0.8235 3.3779 46 1 -2.7549 0.5497 5.0567 47 1 1.8177 3.2155 1.2090 48 1 0.4464 2.0809 1.3067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884775510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:36 Heat of formation + Delta-G solvation = -141.379169 kcal Electronic energy + Delta-G solvation = -28909.176781 eV Core-core repulsion = 25156.585011 eV Total energy + Delta-G solvation = -3752.591770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14399 -39.18611 -37.21998 -36.29352 -34.22959 -33.15264 -32.72590 -31.92327 -29.29414 -27.44705 -27.42402 -26.87478 -24.63654 -24.43303 -22.85992 -21.86070 -20.19584 -19.25930 -18.29062 -16.88316 -16.69247 -16.55996 -15.91461 -15.88712 -14.95392 -14.68561 -14.40662 -14.31292 -14.01621 -13.72205 -13.55259 -13.28943 -13.14244 -12.67101 -12.50682 -12.28694 -12.22622 -12.17307 -12.01733 -11.91392 -11.87914 -11.67651 -11.50930 -11.36580 -11.26274 -10.96253 -10.81463 -10.55754 -10.49623 -10.40173 -10.26165 -10.24302 -9.92963 -9.65405 -9.39117 -9.03343 -7.92494 -7.58589 -6.63447 -4.85360 2.37763 2.78082 3.44615 3.49131 3.72976 4.12518 4.20573 4.54229 4.66317 4.72925 4.73724 4.82434 4.89530 4.95733 5.20979 5.35275 5.42388 5.44831 5.46688 5.48299 5.65259 5.68303 5.72331 5.76529 5.77960 5.83678 5.91604 5.99120 6.00207 6.06943 6.10891 6.16725 6.18770 6.23266 6.28078 6.35276 6.40427 6.45788 6.55678 6.65762 6.77608 7.03508 7.04895 7.59142 7.84770 7.99997 8.28859 8.68632 9.10828 10.01424 10.36825 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.005381 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.565387 B = 5202.598151 C = 6280.392528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.104 4.104 3 C -0.067 4.067 4 C 0.483 3.517 5 O -0.511 6.511 6 O -0.332 6.332 7 C 0.111 3.889 8 C -0.181 4.181 9 C -0.141 4.141 10 C -0.182 4.182 11 C -0.094 4.094 12 C -0.134 4.134 13 C 0.114 3.886 14 N -0.626 5.626 15 C 0.554 3.446 16 O -0.615 6.615 17 C -0.529 4.529 18 H 0.091 0.909 19 C 0.103 3.897 20 N -0.825 5.825 21 Si 0.965 3.035 22 H -0.279 1.279 23 H -0.323 1.323 24 H -0.263 1.263 25 C 0.134 3.866 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.282 0.718 47 H 0.048 0.952 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 2.577 -15.118 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.141 4.141 3 C -0.069 4.069 4 C 0.326 3.674 5 O -0.400 6.400 6 O -0.249 6.249 7 C 0.075 3.925 8 C -0.238 4.238 9 C -0.198 4.198 10 C -0.239 4.239 11 C -0.131 4.131 12 C -0.172 4.172 13 C -0.010 4.010 14 N -0.360 5.360 15 C 0.365 3.635 16 O -0.507 6.507 17 C -0.564 4.564 18 H 0.109 0.891 19 C -0.115 4.115 20 N -0.454 5.454 21 Si 0.798 3.202 22 H -0.206 1.206 23 H -0.255 1.255 24 H -0.189 1.189 25 C 0.010 3.990 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.297 2.468 -14.860 15.664 hybrid contribution 0.235 -0.327 0.125 0.421 sum 4.532 2.141 -14.735 15.564 Atomic orbital electron populations 1.22182 0.94256 1.01851 1.04529 1.21497 0.97665 0.92579 1.02381 1.21148 0.96908 0.97301 0.91565 1.23574 0.80553 0.76261 0.86962 1.90516 1.57187 1.45891 1.46364 1.86767 1.25479 1.69271 1.43355 1.22173 0.95494 0.91801 0.83079 1.22473 1.03893 1.00556 0.96885 1.21848 0.91756 1.03350 1.02877 1.22480 1.03912 0.94927 1.02631 1.21410 0.91674 1.01521 0.98521 1.22010 1.00133 1.00294 0.94809 1.21300 0.82415 0.99258 0.97987 1.47592 1.04733 1.64514 1.19155 1.18322 0.87896 0.77343 0.79982 1.90196 1.74768 1.48607 1.37169 1.20742 0.88726 1.27471 1.19501 0.89125 1.25742 0.94003 0.96887 0.94869 1.69557 1.06054 1.37717 1.32102 0.85247 0.75383 0.79471 0.80131 1.20582 1.25500 1.18882 1.21503 1.01183 0.93963 0.82381 0.93277 0.89708 0.91353 0.92753 0.89685 0.92067 0.91418 0.89950 0.91122 0.90770 0.91405 0.89945 0.91430 0.91793 0.91517 0.91351 0.91235 0.91138 0.93409 0.89313 0.90814 0.93346 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.06 37.16 0.34 -2.50 16 2 C -0.10 -1.64 4.49 -26.73 -0.12 -1.76 16 3 C -0.07 -1.05 0.51 -155.54 -0.08 -1.13 16 4 C 0.48 7.38 5.80 36.00 0.21 7.59 16 5 O -0.51 -8.12 11.48 -18.75 -0.22 -8.34 16 6 O -0.33 -4.84 6.74 -39.27 -0.26 -5.11 16 7 C 0.11 1.33 1.13 -90.62 -0.10 1.23 16 8 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 9 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 10 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 11 C -0.09 -1.34 4.01 -26.66 -0.11 -1.44 16 12 C -0.13 -1.93 5.74 -26.58 -0.15 -2.09 16 13 C 0.11 2.01 6.44 -3.71 -0.02 1.99 16 14 N -0.63 -12.95 2.41 -174.42 -0.42 -13.37 16 15 C 0.55 14.13 7.34 -12.99 -0.10 14.04 16 16 O -0.62 -17.25 11.69 5.20 0.06 -17.19 16 17 C -0.53 -14.16 8.37 -35.63 -0.30 -14.45 16 18 H 0.09 2.42 6.20 -52.49 -0.33 2.09 16 19 C 0.10 2.84 5.52 -17.36 -0.10 2.75 16 20 N -0.82 -22.67 13.92 55.55 0.77 -21.89 16 21 Si 0.96 24.99 25.87 -169.99 -4.40 20.59 16 22 H -0.28 -7.51 7.11 56.52 0.40 -7.10 16 23 H -0.32 -7.98 7.11 56.52 0.40 -7.58 16 24 H -0.26 -7.12 6.61 56.52 0.37 -6.75 16 25 C 0.13 2.44 4.69 -3.71 -0.02 2.42 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.66 5.41 -51.93 -0.28 1.37 16 28 H 0.07 1.05 5.33 -51.93 -0.28 0.77 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.50 5.97 -51.93 -0.31 1.19 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.06 5.89 -51.93 -0.31 0.76 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.09 5.89 -51.93 -0.31 0.79 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 41 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.72 6.99 -51.93 -0.36 1.35 16 46 H 0.28 7.18 8.29 -40.82 -0.34 6.84 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.12 2.28 3.61 -51.93 -0.19 2.09 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -30.26 355.42 -6.46 -36.72 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.76 Total: 1.18 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 0.40 Total: 2.05 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.35 Total: -35.27 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.42 Total: -30.63 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.40 Total: 20.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.26 -6.46 -36.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884775510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.661 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds