Wall clock time and date at job start Fri Apr 10 2020 22:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46722 * 2 1 4 4 C 1.50694 * 109.49927 * 299.99819 * 3 2 1 5 5 O 1.20826 * 120.00182 * 240.00142 * 4 3 2 6 6 O 1.34233 * 120.00076 * 60.00113 * 4 3 2 7 7 C 1.45198 * 116.99936 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47353 * 60.00067 * 7 6 4 9 9 C 1.53001 * 109.47090 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.47283 * 299.99738 * 7 6 4 11 11 C 1.53046 * 109.49564 * 179.97438 * 3 2 1 12 12 C 1.53097 * 109.50485 * 301.38336 * 11 3 2 13 13 C 1.53197 * 109.33082 * 298.65520 * 12 11 3 14 14 N 1.46929 * 108.77503 * 54.63422 * 13 12 11 15 15 C 1.34773 * 120.62881 * 126.41540 * 14 13 12 16 16 O 1.21693 * 120.00125 * 354.67646 * 15 14 13 17 17 C 1.46374 * 119.99957 * 174.68043 * 15 14 13 18 18 H 1.08002 * 119.99880 * 348.07752 * 17 15 14 19 19 C 1.40057 * 119.99981 * 168.08395 * 17 15 14 20 20 N 1.30670 * 119.99787 * 171.18452 * 19 17 15 21 21 Si 1.86794 * 120.00061 * 351.18018 * 19 17 15 22 22 H 1.48504 * 109.46939 * 84.64586 * 21 19 17 23 23 H 1.48498 * 109.47301 * 204.64414 * 21 19 17 24 24 H 1.48499 * 109.47236 * 324.64864 * 21 19 17 25 25 C 1.46922 * 118.74088 * 306.39390 * 14 13 12 26 26 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47686 * 299.99845 * 1 2 3 28 28 H 1.09003 * 109.47195 * 60.00012 * 1 2 3 29 29 H 1.08996 * 109.47240 * 239.99894 * 2 1 3 30 30 H 1.08994 * 109.47111 * 119.99797 * 2 1 3 31 31 H 1.09000 * 109.46768 * 59.99654 * 8 7 6 32 32 H 1.09001 * 109.47190 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.46979 * 300.00117 * 8 7 6 34 34 H 1.08994 * 109.47232 * 59.99479 * 9 7 6 35 35 H 1.09001 * 109.47331 * 179.97438 * 9 7 6 36 36 H 1.09005 * 109.46834 * 299.99849 * 9 7 6 37 37 H 1.09007 * 109.46989 * 60.00194 * 10 7 6 38 38 H 1.09002 * 109.47583 * 179.97438 * 10 7 6 39 39 H 1.08991 * 109.47339 * 300.00685 * 10 7 6 40 40 H 1.09000 * 109.45268 * 61.43617 * 11 3 2 41 41 H 1.08996 * 109.45647 * 181.38686 * 11 3 2 42 42 H 1.08994 * 109.49035 * 178.70090 * 12 11 3 43 43 H 1.09000 * 109.51759 * 58.62908 * 12 11 3 44 44 H 1.09002 * 109.58332 * 294.84976 * 13 12 11 45 45 H 1.09001 * 109.70681 * 174.49051 * 13 12 11 46 46 H 0.96997 * 119.99992 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.58970 * 293.82219 * 25 14 13 48 48 H 1.08994 * 109.58925 * 173.39194 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5379 2.1535 -1.2302 5 8 2.3233 2.6128 -2.0253 6 8 0.2183 2.2765 -1.4428 7 6 -0.1931 2.9727 -2.6488 8 6 0.3539 2.2374 -3.8740 9 6 -1.7209 3.0137 -2.7180 10 6 0.3543 4.4013 -2.6248 11 6 3.5704 1.4433 0.0006 12 6 4.0814 0.6922 1.2330 13 6 3.5964 1.4057 2.4989 14 7 2.1344 1.5381 2.4365 15 6 1.3609 1.0937 3.4468 16 8 1.8625 0.4908 4.3773 17 6 -0.0824 1.3362 3.4247 18 1 -0.5028 2.0285 2.7102 19 6 -0.9182 0.6706 4.3302 20 7 -2.1761 1.0104 4.4293 21 14 -0.2349 -0.7028 5.3961 22 1 0.3925 -0.1216 6.6101 23 1 -1.3372 -1.6138 5.7963 24 1 0.7832 -1.4646 4.6292 25 6 1.5318 2.1645 1.2520 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 -0.0361 1.2197 -3.8910 32 1 0.0448 2.7599 -4.7793 33 1 1.4424 2.2086 -3.8244 34 1 -2.1103 3.5377 -1.8452 35 1 -2.0298 3.5368 -3.6231 36 1 -2.1113 1.9961 -2.7349 37 1 1.4429 4.3725 -2.5753 38 1 0.0459 4.9238 -3.5303 39 1 -0.0353 4.9251 -1.7520 40 1 3.9340 0.9519 -0.9018 41 1 3.9329 2.4709 0.0255 42 1 5.1711 0.6730 1.2211 43 1 3.6994 -0.3286 1.2216 44 1 4.0507 2.3948 2.5577 45 1 3.8733 0.8235 3.3779 46 1 -2.7549 0.5497 5.0567 47 1 1.8177 3.2155 1.2090 48 1 0.4464 2.0809 1.3067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884775510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:36 Heat of formation + Delta-G solvation = -157.879738 kcal Electronic energy + Delta-G solvation = -28909.892300 eV Core-core repulsion = 25156.585011 eV Total energy + Delta-G solvation = -3753.307289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34813 -40.66983 -38.75573 -37.67209 -35.42234 -34.94202 -34.35799 -33.37676 -30.65052 -28.83419 -28.32352 -28.25660 -26.18494 -25.78265 -24.14317 -23.19143 -21.62329 -20.56399 -19.75729 -18.54981 -18.18763 -17.85322 -17.55883 -17.05825 -16.73619 -15.95858 -15.85091 -15.43120 -15.40343 -15.12667 -14.85211 -14.55323 -14.51730 -14.41333 -13.94452 -13.80807 -13.73871 -13.36086 -13.16246 -13.08737 -12.95578 -12.91475 -12.82194 -12.68974 -12.51055 -12.48753 -12.32048 -12.02099 -11.88032 -11.77951 -11.65452 -11.44754 -11.25905 -11.18025 -11.09661 -10.83786 -9.95678 -9.31169 -8.75412 -6.95315 1.16406 1.34282 1.39357 1.62406 1.69407 2.12071 2.35225 2.66954 3.31467 3.52288 3.60027 3.70778 3.78003 3.85624 3.96002 4.01763 4.11248 4.17004 4.43478 4.48975 4.56005 4.62171 4.63839 4.64729 4.71572 4.80793 4.82935 4.84332 4.88091 4.91161 4.92135 4.95012 5.00658 5.08786 5.12813 5.15459 5.22060 5.30342 5.31809 5.33743 5.45713 5.57011 5.65955 5.71852 5.97774 6.27252 6.65137 6.84205 7.13817 8.01023 8.29636 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.005381 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.565387 B = 5202.598151 C = 6280.392528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.099 4.099 3 C -0.063 4.063 4 C 0.487 3.513 5 O -0.515 6.515 6 O -0.344 6.344 7 C 0.099 3.901 8 C -0.176 4.176 9 C -0.139 4.139 10 C -0.179 4.179 11 C -0.088 4.088 12 C -0.124 4.124 13 C 0.108 3.892 14 N -0.623 5.623 15 C 0.553 3.447 16 O -0.644 6.644 17 C -0.539 4.539 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.845 5.845 21 Si 1.005 2.995 22 H -0.295 1.295 23 H -0.303 1.303 24 H -0.284 1.284 25 C 0.135 3.865 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.290 0.710 47 H 0.058 0.942 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 2.786 -17.327 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.137 4.137 3 C -0.065 4.065 4 C 0.331 3.669 5 O -0.404 6.404 6 O -0.261 6.261 7 C 0.064 3.936 8 C -0.233 4.233 9 C -0.196 4.196 10 C -0.236 4.236 11 C -0.126 4.126 12 C -0.162 4.162 13 C -0.015 4.015 14 N -0.355 5.355 15 C 0.361 3.639 16 O -0.539 6.539 17 C -0.575 4.575 18 H 0.102 0.898 19 C -0.141 4.141 20 N -0.476 5.476 21 Si 0.839 3.161 22 H -0.223 1.223 23 H -0.233 1.233 24 H -0.210 1.210 25 C 0.011 3.989 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.076 0.924 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.079 2.690 -17.103 18.043 hybrid contribution 0.001 -0.308 0.737 0.799 sum 5.080 2.382 -16.366 17.301 Atomic orbital electron populations 1.22093 0.94992 1.01734 1.03384 1.21441 0.96945 0.92833 1.02464 1.21065 0.98131 0.96793 0.90531 1.23313 0.80847 0.76151 0.86627 1.90523 1.57386 1.45985 1.46470 1.86740 1.25005 1.69565 1.44815 1.22535 0.96697 0.91925 0.82460 1.22427 1.02605 1.00919 0.97329 1.21883 0.90253 1.03614 1.03824 1.22450 1.02627 0.94888 1.03646 1.21402 0.90194 1.01996 0.98965 1.21941 1.02057 0.99219 0.92936 1.21545 0.80295 1.00538 0.99091 1.47486 1.06054 1.63331 1.18647 1.18219 0.87929 0.77168 0.80539 1.90167 1.75333 1.49802 1.38578 1.20882 0.89745 1.27487 1.19365 0.89845 1.26150 0.94350 0.97954 0.95684 1.69559 1.06396 1.38620 1.33035 0.84679 0.74798 0.78325 0.78328 1.22272 1.23318 1.21048 1.21502 1.00091 0.94641 0.82666 0.92903 0.93077 0.90167 0.90437 0.91668 0.91898 0.89039 0.91690 0.92060 0.88026 0.91484 0.91691 0.88942 0.92419 0.89904 0.90843 0.87887 0.91949 0.91434 0.91320 0.89939 0.92418 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.45 9.06 71.98 0.65 -4.80 16 2 C -0.10 -3.05 4.49 30.60 0.14 -2.91 16 3 C -0.06 -1.89 0.51 -52.85 -0.03 -1.92 16 4 C 0.49 14.15 5.80 71.23 0.41 14.56 16 5 O -0.51 -15.33 11.48 21.96 0.25 -15.08 16 6 O -0.34 -9.68 6.74 -51.44 -0.35 -10.03 16 7 C 0.10 2.20 1.13 -10.79 -0.01 2.19 16 8 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 9 C -0.14 -2.52 8.85 71.98 0.64 -1.89 16 10 C -0.18 -3.80 8.37 71.98 0.60 -3.20 16 11 C -0.09 -2.28 4.01 30.64 0.12 -2.15 16 12 C -0.12 -3.27 5.74 30.69 0.18 -3.09 16 13 C 0.11 3.68 6.44 86.36 0.56 4.24 16 14 N -0.62 -25.78 2.41 -823.98 -1.99 -27.77 16 15 C 0.55 28.72 7.34 86.36 0.63 29.35 16 16 O -0.64 -36.78 11.69 -4.32 -0.05 -36.83 16 17 C -0.54 -29.56 8.37 24.83 0.21 -29.35 16 18 H 0.08 4.61 6.20 -2.91 -0.02 4.60 16 19 C 0.07 4.18 5.52 85.31 0.47 4.65 16 20 N -0.85 -46.94 13.92 21.84 0.30 -46.63 16 21 Si 1.01 52.20 25.87 68.60 1.77 53.97 16 22 H -0.30 -15.96 7.11 99.48 0.71 -15.26 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.28 -15.56 6.61 99.48 0.66 -14.90 16 25 C 0.13 4.87 4.69 86.37 0.41 5.27 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 2.05 5.41 -2.39 -0.01 2.03 16 28 H 0.08 2.42 5.33 -2.39 -0.01 2.40 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.28 5.97 -2.39 -0.01 2.27 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.53 5.89 -2.39 -0.01 1.52 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.06 1.62 5.89 -2.38 -0.01 1.61 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.94 8.06 -2.39 -0.02 1.93 16 41 H 0.07 1.86 8.13 -2.39 -0.02 1.85 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 43 H 0.06 1.78 6.34 -2.39 -0.02 1.77 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 2.64 6.99 -2.39 -0.02 2.62 16 46 H 0.29 14.82 8.29 -92.71 -0.77 14.05 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 48 H 0.09 3.85 3.61 -2.39 -0.01 3.85 16 Total: -1.00 -65.59 355.42 6.43 -59.16 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.90 Total: 15.12 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.58 Total: 8.09 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.68 Total: -74.41 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -0.15 Total: -61.94 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 1.77 Total: 53.97 kcal Total: -65.59 6.43 -59.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884775510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.715 kcal (2) G-P(sol) polarization free energy of solvation -65.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds