Wall clock time and date at job start Fri Apr 10 2020 22:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.50695 * 109.49939 * 60.06461 * 3 2 1 5 5 O 1.20820 * 119.99964 * 119.93860 * 4 3 2 6 6 O 1.34231 * 120.00203 * 299.93478 * 4 3 2 7 7 C 1.45192 * 117.00393 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47341 * 59.99728 * 7 6 4 9 9 C 1.52995 * 109.47393 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.46981 * 300.00254 * 7 6 4 11 11 C 1.53041 * 109.49613 * 180.16517 * 3 2 1 12 12 C 1.53042 * 109.54197 * 58.57975 * 11 3 2 13 13 C 1.52766 * 109.37818 * 61.24241 * 12 11 3 14 14 N 1.46924 * 109.00671 * 305.58727 * 13 12 11 15 15 C 1.34786 * 120.62898 * 233.58229 * 14 13 12 16 16 O 1.21693 * 119.99604 * 174.49280 * 15 14 13 17 17 C 1.46365 * 120.00064 * 354.49401 * 15 14 13 18 18 H 1.08009 * 119.99793 * 4.99115 * 17 15 14 19 19 C 1.40042 * 120.00212 * 184.99005 * 17 15 14 20 20 N 1.30677 * 120.00340 * 184.99645 * 19 17 15 21 21 Si 1.86805 * 119.99998 * 4.99359 * 19 17 15 22 22 H 1.48499 * 109.47350 * 179.97438 * 21 19 17 23 23 H 1.48492 * 109.46922 * 300.00041 * 21 19 17 24 24 H 1.48495 * 109.46950 * 60.00092 * 21 19 17 25 25 C 1.46926 * 118.74068 * 53.31368 * 14 13 12 26 26 H 1.09007 * 109.47019 * 300.00426 * 1 2 3 27 27 H 1.09000 * 109.47163 * 59.99579 * 1 2 3 28 28 H 1.08998 * 109.47541 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46967 * 239.99559 * 2 1 3 30 30 H 1.08996 * 109.47042 * 119.99686 * 2 1 3 31 31 H 1.09005 * 109.46495 * 60.00095 * 8 7 6 32 32 H 1.08998 * 109.47314 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.46796 * 300.00378 * 8 7 6 34 34 H 1.09000 * 109.47405 * 60.00323 * 9 7 6 35 35 H 1.09008 * 109.47375 * 179.97438 * 9 7 6 36 36 H 1.09002 * 109.47347 * 299.99847 * 9 7 6 37 37 H 1.08993 * 109.47720 * 59.99843 * 10 7 6 38 38 H 1.09008 * 109.47078 * 180.02562 * 10 7 6 39 39 H 1.09002 * 109.47031 * 299.99817 * 10 7 6 40 40 H 1.09000 * 109.45845 * 178.60400 * 11 3 2 41 41 H 1.09008 * 109.45855 * 298.57782 * 11 3 2 42 42 H 1.08994 * 109.49817 * 181.31420 * 12 11 3 43 43 H 1.08992 * 109.49554 * 301.38903 * 12 11 3 44 44 H 1.08994 * 109.50919 * 185.70473 * 13 12 11 45 45 H 1.08994 * 109.43326 * 65.42399 * 13 12 11 46 46 H 0.96998 * 119.99583 * 354.99115 * 20 19 17 47 47 H 1.08999 * 109.59001 * 66.42745 * 25 14 13 48 48 H 1.08999 * 109.58528 * 186.70909 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5393 2.1531 1.2310 5 8 2.3255 2.6111 2.0259 6 8 0.2199 2.2772 1.4444 7 6 -0.1902 2.9739 2.6504 8 6 0.3584 4.4020 2.6260 9 6 -1.7179 3.0151 2.7212 10 6 0.3570 2.2383 3.8753 11 6 3.5704 1.4432 -0.0042 12 6 4.0793 0.6928 -1.2370 13 6 3.5917 1.4020 -2.4992 14 7 2.1303 1.5394 -2.4366 15 6 1.3549 1.0948 -3.4454 16 8 0.1429 1.1227 -3.3390 17 6 1.9705 0.5786 -4.6689 18 1 3.0440 0.4785 -4.7325 19 6 1.1676 0.2145 -5.7570 20 7 1.7073 -0.3371 -6.8116 21 14 -0.6749 0.5170 -5.7008 22 1 -1.2927 0.0465 -6.9666 23 1 -1.2635 -0.2242 -4.5567 24 1 -0.9331 1.9699 -5.5348 25 6 1.5297 2.1652 -1.2506 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 -0.0314 4.9260 1.7533 32 1 0.0510 4.9249 3.5316 33 1 1.4469 4.3722 2.5758 34 1 -2.1084 1.9976 2.7389 35 1 -2.0258 3.5378 3.6269 36 1 -2.1081 3.5389 1.8485 37 1 1.4454 2.2086 3.8253 38 1 0.0487 2.7612 4.7808 39 1 -0.0338 1.2209 3.8928 40 1 3.9330 2.4708 -0.0292 41 1 3.9362 0.9509 0.8970 42 1 5.1690 0.6735 -1.2271 43 1 3.6972 -0.3279 -1.2250 44 1 3.8663 0.8151 -3.3756 45 1 4.0493 2.3893 -2.5601 46 1 2.6711 -0.4280 -6.8717 47 1 1.8157 3.2161 -1.2076 48 1 0.4441 2.0839 -1.3048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884775511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:39 Heat of formation + Delta-G solvation = -146.935845 kcal Electronic energy + Delta-G solvation = -28700.724617 eV Core-core repulsion = 24947.891891 eV Total energy + Delta-G solvation = -3752.832726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22318 -39.25309 -37.26071 -36.32968 -34.38870 -33.34634 -32.93704 -31.55965 -29.51192 -27.53005 -27.52438 -26.68180 -24.81162 -24.09396 -22.96419 -21.89162 -20.21935 -19.45866 -18.40470 -17.31284 -16.86573 -16.58331 -16.07382 -15.76842 -14.95621 -14.81396 -14.45329 -14.29403 -13.83935 -13.74210 -13.56568 -13.44281 -13.22205 -12.81470 -12.60017 -12.38757 -12.30445 -12.26874 -12.10533 -12.06970 -12.00831 -11.73591 -11.59334 -11.38748 -11.30871 -10.92252 -10.62806 -10.55809 -10.46551 -10.30740 -10.28353 -10.18346 -9.95976 -9.75756 -9.08017 -8.97926 -7.90739 -7.65699 -7.00868 -4.94931 2.30015 2.69533 3.57194 3.67398 3.99068 4.21698 4.29780 4.55657 4.59025 4.63625 4.67861 4.75447 4.80853 4.89126 5.13954 5.31023 5.33660 5.38213 5.39392 5.47809 5.55999 5.58875 5.66822 5.67604 5.69332 5.75197 5.83857 5.88554 5.93513 6.00960 6.06726 6.10444 6.12099 6.14933 6.20749 6.27048 6.34135 6.37120 6.47978 6.59328 6.68226 6.88130 7.19893 7.71055 7.73471 7.91833 8.08453 8.81730 8.93129 10.00218 10.31632 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.004673 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.788486 B = 5990.899833 C = 6844.391941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.066 4.066 4 C 0.482 3.518 5 O -0.510 6.510 6 O -0.334 6.334 7 C 0.110 3.890 8 C -0.182 4.182 9 C -0.141 4.141 10 C -0.181 4.181 11 C -0.093 4.093 12 C -0.137 4.137 13 C 0.118 3.882 14 N -0.627 5.627 15 C 0.556 3.444 16 O -0.612 6.612 17 C -0.596 4.596 18 H 0.076 0.924 19 C 0.061 3.939 20 N -0.833 5.833 21 Si 1.128 2.872 22 H -0.324 1.324 23 H -0.280 1.280 24 H -0.291 1.291 25 C 0.131 3.869 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.277 0.723 47 H 0.048 0.952 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 4.622 18.045 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.142 4.142 3 C -0.068 4.068 4 C 0.326 3.674 5 O -0.398 6.398 6 O -0.251 6.251 7 C 0.074 3.926 8 C -0.239 4.239 9 C -0.198 4.198 10 C -0.238 4.238 11 C -0.131 4.131 12 C -0.175 4.175 13 C -0.006 4.006 14 N -0.361 5.361 15 C 0.367 3.633 16 O -0.505 6.505 17 C -0.632 4.632 18 H 0.094 0.906 19 C -0.156 4.156 20 N -0.460 5.460 21 Si 0.961 3.039 22 H -0.256 1.256 23 H -0.207 1.207 24 H -0.219 1.219 25 C 0.007 3.993 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.262 4.548 17.514 18.139 hybrid contribution 1.953 0.352 1.154 2.295 sum 0.690 4.900 18.668 19.313 Atomic orbital electron populations 1.22132 0.94577 1.01695 1.04100 1.21496 0.97426 0.92695 1.02534 1.21130 0.97070 0.97182 0.91412 1.23605 0.80502 0.76311 0.87002 1.90518 1.57071 1.45853 1.46343 1.86749 1.25629 1.69340 1.43404 1.22177 0.95459 0.91840 0.83117 1.22480 1.03966 0.94883 1.02613 1.21846 0.91804 1.03292 1.02842 1.22474 1.03952 1.00538 0.96862 1.21398 0.91484 1.01570 0.98645 1.21974 1.00307 1.00375 0.94869 1.21438 0.81540 0.99524 0.98120 1.47702 1.05663 1.64120 1.18598 1.18457 0.85458 0.76488 0.82874 1.90131 1.14944 1.64698 1.80723 1.22136 0.96036 1.46537 0.98457 0.90560 1.27149 1.09331 0.88524 0.90615 1.70665 1.14890 1.31231 1.29207 0.82400 0.71513 0.77537 0.72450 1.25576 1.20672 1.21865 1.21243 1.00932 0.94096 0.83075 0.91342 0.90309 0.93248 0.89567 0.92632 0.91883 0.91355 0.89898 0.91442 0.90681 0.91268 0.89904 0.91357 0.92068 0.91347 0.91504 0.91043 0.91086 0.88580 0.93406 0.91221 0.93394 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.06 37.16 0.34 -2.39 16 2 C -0.10 -1.63 4.49 -26.73 -0.12 -1.75 16 3 C -0.07 -1.02 0.51 -155.54 -0.08 -1.10 16 4 C 0.48 7.28 5.80 36.00 0.21 7.48 16 5 O -0.51 -8.00 11.48 -18.75 -0.22 -8.21 16 6 O -0.33 -4.75 6.74 -39.26 -0.26 -5.01 16 7 C 0.11 1.27 1.13 -90.62 -0.10 1.17 16 8 C -0.18 -2.03 8.37 37.16 0.31 -1.71 16 9 C -0.14 -1.32 8.85 37.15 0.33 -0.99 16 10 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 11 C -0.09 -1.33 4.01 -26.69 -0.11 -1.43 16 12 C -0.14 -1.96 5.72 -26.83 -0.15 -2.11 16 13 C 0.12 2.05 6.29 -3.93 -0.02 2.02 16 14 N -0.63 -12.95 2.42 -174.70 -0.42 -13.38 16 15 C 0.56 14.16 7.46 -12.99 -0.10 14.06 16 16 O -0.61 -16.75 10.88 5.20 0.06 -16.69 16 17 C -0.60 -16.09 9.28 -35.64 -0.33 -16.42 16 18 H 0.08 2.00 5.90 -52.48 -0.31 1.69 16 19 C 0.06 1.73 5.52 -17.37 -0.10 1.63 16 20 N -0.83 -23.51 13.65 55.55 0.76 -22.75 16 21 Si 1.13 29.36 25.98 -169.99 -4.42 24.95 16 22 H -0.32 -8.20 7.11 56.52 0.40 -7.79 16 23 H -0.28 -7.45 6.79 56.52 0.38 -7.07 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 C 0.13 2.40 4.83 -3.71 -0.02 2.38 16 26 H 0.07 1.02 5.33 -51.92 -0.28 0.74 16 27 H 0.08 1.52 5.71 -51.93 -0.30 1.22 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.52 5.97 -51.93 -0.31 1.21 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.07 5.89 -51.93 -0.31 0.77 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.04 5.89 -51.93 -0.31 0.74 16 38 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 41 H 0.07 0.90 8.07 -51.92 -0.42 0.48 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.06 6.33 -51.93 -0.33 0.74 16 44 H 0.10 1.81 5.38 -51.93 -0.28 1.53 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.28 7.49 8.72 -40.82 -0.36 7.13 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.10 2.10 5.04 -51.93 -0.26 1.84 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -30.16 355.89 -6.53 -36.69 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.76 Total: -0.16 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 0.37 Total: -0.80 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.34 Total: -36.13 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.42 Total: -29.92 kcal Atomic # 14 Polarization: 29.36 SS G_CDS: -4.42 Total: 24.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.16 -6.53 -36.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884775511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.246 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds