Wall clock time and date at job start Fri Apr 10 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.50695 * 109.49939 * 60.06461 * 3 2 1 5 5 O 1.20820 * 119.99964 * 119.93860 * 4 3 2 6 6 O 1.34231 * 120.00203 * 299.93478 * 4 3 2 7 7 C 1.45192 * 117.00393 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47341 * 59.99728 * 7 6 4 9 9 C 1.52995 * 109.47393 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.46981 * 300.00254 * 7 6 4 11 11 C 1.53041 * 109.49613 * 180.16517 * 3 2 1 12 12 C 1.53042 * 109.54197 * 58.57975 * 11 3 2 13 13 C 1.52766 * 109.37818 * 61.24241 * 12 11 3 14 14 N 1.46924 * 109.00671 * 305.58727 * 13 12 11 15 15 C 1.34786 * 120.62898 * 233.58229 * 14 13 12 16 16 O 1.21693 * 119.99604 * 174.49280 * 15 14 13 17 17 C 1.46365 * 120.00064 * 354.49401 * 15 14 13 18 18 H 1.08009 * 119.99793 * 4.99115 * 17 15 14 19 19 C 1.40042 * 120.00212 * 184.99005 * 17 15 14 20 20 N 1.30677 * 120.00340 * 184.99645 * 19 17 15 21 21 Si 1.86805 * 119.99998 * 4.99359 * 19 17 15 22 22 H 1.48499 * 109.47350 * 179.97438 * 21 19 17 23 23 H 1.48492 * 109.46922 * 300.00041 * 21 19 17 24 24 H 1.48495 * 109.46950 * 60.00092 * 21 19 17 25 25 C 1.46926 * 118.74068 * 53.31368 * 14 13 12 26 26 H 1.09007 * 109.47019 * 300.00426 * 1 2 3 27 27 H 1.09000 * 109.47163 * 59.99579 * 1 2 3 28 28 H 1.08998 * 109.47541 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46967 * 239.99559 * 2 1 3 30 30 H 1.08996 * 109.47042 * 119.99686 * 2 1 3 31 31 H 1.09005 * 109.46495 * 60.00095 * 8 7 6 32 32 H 1.08998 * 109.47314 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.46796 * 300.00378 * 8 7 6 34 34 H 1.09000 * 109.47405 * 60.00323 * 9 7 6 35 35 H 1.09008 * 109.47375 * 179.97438 * 9 7 6 36 36 H 1.09002 * 109.47347 * 299.99847 * 9 7 6 37 37 H 1.08993 * 109.47720 * 59.99843 * 10 7 6 38 38 H 1.09008 * 109.47078 * 180.02562 * 10 7 6 39 39 H 1.09002 * 109.47031 * 299.99817 * 10 7 6 40 40 H 1.09000 * 109.45845 * 178.60400 * 11 3 2 41 41 H 1.09008 * 109.45855 * 298.57782 * 11 3 2 42 42 H 1.08994 * 109.49817 * 181.31420 * 12 11 3 43 43 H 1.08992 * 109.49554 * 301.38903 * 12 11 3 44 44 H 1.08994 * 109.50919 * 185.70473 * 13 12 11 45 45 H 1.08994 * 109.43326 * 65.42399 * 13 12 11 46 46 H 0.96998 * 119.99583 * 354.99115 * 20 19 17 47 47 H 1.08999 * 109.59001 * 66.42745 * 25 14 13 48 48 H 1.08999 * 109.58528 * 186.70909 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5393 2.1531 1.2310 5 8 2.3255 2.6111 2.0259 6 8 0.2199 2.2772 1.4444 7 6 -0.1902 2.9739 2.6504 8 6 0.3584 4.4020 2.6260 9 6 -1.7179 3.0151 2.7212 10 6 0.3570 2.2383 3.8753 11 6 3.5704 1.4432 -0.0042 12 6 4.0793 0.6928 -1.2370 13 6 3.5917 1.4020 -2.4992 14 7 2.1303 1.5394 -2.4366 15 6 1.3549 1.0948 -3.4454 16 8 0.1429 1.1227 -3.3390 17 6 1.9705 0.5786 -4.6689 18 1 3.0440 0.4785 -4.7325 19 6 1.1676 0.2145 -5.7570 20 7 1.7073 -0.3371 -6.8116 21 14 -0.6749 0.5170 -5.7008 22 1 -1.2927 0.0465 -6.9666 23 1 -1.2635 -0.2242 -4.5567 24 1 -0.9331 1.9699 -5.5348 25 6 1.5297 2.1652 -1.2506 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 -0.0314 4.9260 1.7533 32 1 0.0510 4.9249 3.5316 33 1 1.4469 4.3722 2.5758 34 1 -2.1084 1.9976 2.7389 35 1 -2.0258 3.5378 3.6269 36 1 -2.1081 3.5389 1.8485 37 1 1.4454 2.2086 3.8253 38 1 0.0487 2.7612 4.7808 39 1 -0.0338 1.2209 3.8928 40 1 3.9330 2.4708 -0.0292 41 1 3.9362 0.9509 0.8970 42 1 5.1690 0.6735 -1.2271 43 1 3.6972 -0.3279 -1.2250 44 1 3.8663 0.8151 -3.3756 45 1 4.0493 2.3893 -2.5601 46 1 2.6711 -0.4280 -6.8717 47 1 1.8157 3.2161 -1.2076 48 1 0.4441 2.0839 -1.3048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884775511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:38 Heat of formation + Delta-G solvation = -163.246675 kcal Electronic energy + Delta-G solvation = -28701.431908 eV Core-core repulsion = 24947.891891 eV Total energy + Delta-G solvation = -3753.540017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.40442 -40.71780 -38.75676 -37.71296 -35.58851 -35.08003 -34.57532 -32.98972 -30.89172 -28.59237 -28.36963 -28.29896 -26.18138 -25.66398 -24.21250 -23.14624 -21.73863 -20.80480 -19.89554 -19.01901 -18.13896 -17.77739 -17.48091 -17.20654 -16.63873 -16.00908 -15.78267 -15.52301 -15.34255 -15.12098 -15.01253 -14.70157 -14.58171 -14.43714 -14.06764 -13.88124 -13.69122 -13.41003 -13.20761 -13.11935 -12.97037 -12.87099 -12.68369 -12.56735 -12.50514 -12.37109 -12.33458 -12.04192 -11.98117 -11.79587 -11.64068 -11.36785 -11.17597 -11.14932 -11.12555 -10.87666 -9.96379 -9.35569 -9.15662 -7.07724 1.11093 1.45812 1.56356 1.63416 1.97795 2.23106 2.37769 2.66093 3.30157 3.45631 3.54724 3.64554 3.73474 3.80818 3.90636 3.97106 4.09210 4.13758 4.37252 4.42682 4.48044 4.57619 4.59795 4.60600 4.65923 4.76161 4.78613 4.80607 4.83590 4.86886 4.89110 4.91395 4.94914 5.03810 5.06884 5.11021 5.24275 5.26125 5.29149 5.40726 5.42640 5.48699 5.56451 5.61865 5.87073 6.10284 6.69403 6.78523 7.03840 8.00255 8.16463 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.004673 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.788486 B = 5990.899833 C = 6844.391941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.101 4.101 3 C -0.062 4.062 4 C 0.486 3.514 5 O -0.514 6.514 6 O -0.345 6.345 7 C 0.099 3.901 8 C -0.179 4.179 9 C -0.138 4.138 10 C -0.176 4.176 11 C -0.088 4.088 12 C -0.126 4.126 13 C 0.111 3.889 14 N -0.624 5.624 15 C 0.555 3.445 16 O -0.635 6.635 17 C -0.610 4.610 18 H 0.078 0.922 19 C 0.032 3.968 20 N -0.851 5.851 21 Si 1.158 2.842 22 H -0.313 1.313 23 H -0.293 1.293 24 H -0.297 1.297 25 C 0.132 3.868 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.278 0.722 47 H 0.057 0.943 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 5.184 20.535 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.138 4.138 3 C -0.064 4.064 4 C 0.330 3.670 5 O -0.402 6.402 6 O -0.263 6.263 7 C 0.063 3.937 8 C -0.236 4.236 9 C -0.195 4.195 10 C -0.233 4.233 11 C -0.126 4.126 12 C -0.164 4.164 13 C -0.011 4.011 14 N -0.356 5.356 15 C 0.363 3.637 16 O -0.529 6.529 17 C -0.646 4.646 18 H 0.096 0.904 19 C -0.182 4.182 20 N -0.479 5.479 21 Si 0.990 3.010 22 H -0.244 1.244 23 H -0.221 1.221 24 H -0.225 1.225 25 C 0.008 3.992 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.749 5.118 20.019 20.676 hybrid contribution 1.808 0.247 0.490 1.889 sum 1.059 5.366 20.508 21.225 Atomic orbital electron populations 1.22044 0.95131 1.01672 1.02965 1.21450 0.96883 0.92886 1.02580 1.21045 0.98231 0.96725 0.90391 1.23320 0.80870 0.76199 0.86632 1.90526 1.57309 1.45951 1.46455 1.86721 1.25014 1.69622 1.44897 1.22552 0.96831 0.91883 0.82399 1.22453 1.02592 0.94911 1.03682 1.21883 0.90069 1.03666 1.03890 1.22433 1.02591 1.00946 0.97378 1.21390 0.90078 1.01984 0.99101 1.21902 1.02155 0.99357 0.93030 1.21638 0.79488 1.00685 0.99307 1.47584 1.06924 1.62901 1.18226 1.18351 0.85351 0.76379 0.83639 1.90108 1.16045 1.65393 1.81403 1.22314 0.96272 1.46882 0.99154 0.90388 1.27674 1.10895 0.88696 0.90981 1.70669 1.15060 1.32520 1.29677 0.81975 0.70072 0.76755 0.72184 1.24380 1.22150 1.22538 1.21273 0.99726 0.94759 0.83408 0.90015 0.93782 0.92751 0.91606 0.90336 0.92398 0.88867 0.91797 0.91414 0.87996 0.91940 0.91774 0.88982 0.91864 0.90940 0.89924 0.87814 0.91796 0.90322 0.91665 0.91135 0.92496 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.06 71.98 0.65 -4.52 16 2 C -0.10 -3.04 4.49 30.60 0.14 -2.90 16 3 C -0.06 -1.83 0.51 -52.85 -0.03 -1.86 16 4 C 0.49 13.87 5.80 71.23 0.41 14.28 16 5 O -0.51 -15.08 11.48 21.98 0.25 -14.83 16 6 O -0.35 -9.36 6.74 -51.42 -0.35 -9.71 16 7 C 0.10 2.07 1.13 -10.79 -0.01 2.06 16 8 C -0.18 -3.63 8.37 71.98 0.60 -3.02 16 9 C -0.14 -2.27 8.85 71.98 0.64 -1.63 16 10 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 11 C -0.09 -2.26 4.01 30.62 0.12 -2.14 16 12 C -0.13 -3.31 5.72 30.53 0.17 -3.13 16 13 C 0.11 3.74 6.29 86.22 0.54 4.29 16 14 N -0.62 -25.65 2.42 -824.83 -1.99 -27.65 16 15 C 0.55 28.57 7.46 86.36 0.64 29.22 16 16 O -0.63 -35.44 10.88 -4.32 -0.05 -35.49 16 17 C -0.61 -33.38 9.28 24.82 0.23 -33.15 16 18 H 0.08 4.16 5.90 -2.91 -0.02 4.14 16 19 C 0.03 1.82 5.52 85.30 0.47 2.29 16 20 N -0.85 -48.44 13.65 21.83 0.30 -48.14 16 21 Si 1.16 60.56 25.98 68.60 1.78 62.34 16 22 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.29 -15.88 6.79 99.48 0.68 -15.21 16 24 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 25 C 0.13 4.78 4.83 86.36 0.42 5.19 16 26 H 0.08 2.36 5.33 -2.38 -0.01 2.35 16 27 H 0.04 1.73 5.71 -2.39 -0.01 1.71 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.28 5.97 -2.39 -0.01 2.26 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.55 5.89 -2.39 -0.01 1.54 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.47 5.89 -2.39 -0.01 1.46 16 38 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 41 H 0.08 1.93 8.07 -2.38 -0.02 1.91 16 42 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 1.80 6.33 -2.39 -0.02 1.78 16 44 H 0.08 2.94 5.38 -2.39 -0.01 2.92 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.28 15.21 8.72 -92.71 -0.81 14.40 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.08 3.40 5.04 -2.39 -0.01 3.39 16 Total: -1.00 -65.20 355.89 6.43 -58.77 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.88 Total: 12.45 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.61 Total: 2.25 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -1.70 Total: -75.79 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -0.14 Total: -60.02 kcal Atomic # 14 Polarization: 60.56 SS G_CDS: 1.78 Total: 62.34 kcal Total: -65.20 6.43 -58.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884775511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.477 kcal (2) G-P(sol) polarization free energy of solvation -65.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds