Wall clock time and date at job start Fri Apr 10 2020 22:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46696 * 2 1 4 4 O 1.43221 * 109.49906 * 120.05620 * 2 1 3 5 5 C 1.43834 * 106.43654 * 101.20713 * 4 2 1 6 6 H 1.08994 * 112.58500 * 266.07731 * 5 4 2 7 7 C 1.53782 * 109.54187 * 140.05609 * 5 4 2 8 8 C 1.53611 * 106.07141 * 278.52746 * 7 5 4 9 9 H 1.09000 * 109.89650 * 101.44190 * 8 7 5 10 10 N 1.46500 * 109.89617 * 222.48433 * 8 7 5 11 11 C 1.34777 * 120.00376 * 205.00015 * 10 8 7 12 12 O 1.21279 * 119.99633 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00115 * 179.97438 * 11 10 8 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 C 1.53499 * 107.19330 * 341.87697 * 8 7 5 26 26 C 1.53674 * 107.38379 * 0.13754 * 25 8 7 27 27 H 1.09000 * 112.76890 * 254.48068 * 26 25 8 28 28 O 1.43075 * 109.50231 * 239.94391 * 2 1 3 29 29 H 1.09001 * 109.47009 * 299.95177 * 1 2 3 30 30 H 1.09002 * 109.46571 * 59.94208 * 1 2 3 31 31 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47206 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46973 * 300.05666 * 3 2 1 34 34 H 1.09005 * 109.46837 * 60.05100 * 3 2 1 35 35 H 1.08995 * 110.12990 * 159.37227 * 7 5 4 36 36 H 1.09000 * 110.12994 * 37.67639 * 7 5 4 37 37 H 0.97004 * 119.99396 * 24.99788 * 10 8 7 38 38 H 1.09002 * 109.47060 * 60.00000 * 13 11 10 39 39 H 1.09001 * 109.46927 * 300.00196 * 13 11 10 40 40 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 41 41 H 1.09001 * 109.46832 * 300.00193 * 14 13 11 42 42 H 1.09002 * 109.47103 * 59.99753 * 15 14 13 43 43 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 44 44 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 45 45 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 46 46 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.86317 * 119.58800 * 25 8 7 48 48 H 1.09003 * 109.86117 * 240.68649 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0081 -0.6762 1.1685 5 6 2.3967 -1.9948 0.7453 6 1 1.5999 -2.7274 0.8735 7 6 3.6942 -2.4037 1.4625 8 6 4.8392 -1.7448 0.6785 9 1 5.1833 -0.8536 1.2033 10 7 5.9469 -2.6911 0.5242 11 6 7.2021 -2.2354 0.3421 12 8 7.4147 -1.0419 0.3064 13 6 8.3416 -3.2088 0.1839 14 6 9.6489 -2.4371 -0.0066 15 6 10.8057 -3.4252 -0.1679 16 6 12.1129 -2.6535 -0.3590 17 6 13.2524 -3.6269 -0.5172 18 1 13.0632 -4.6897 -0.4850 19 6 14.5365 -3.1607 -0.7040 20 7 14.7668 -1.8665 -0.7437 21 14 15.9488 -4.3673 -0.9008 22 1 16.1240 -4.6940 -2.3388 23 1 17.1973 -3.7580 -0.3760 24 1 15.6481 -5.6091 -0.1441 25 6 4.2835 -1.3618 -0.7001 26 6 2.8078 -1.7892 -0.7354 27 1 2.6409 -2.6796 -1.3415 28 8 2.0077 -0.6755 -1.1673 29 1 -0.3633 0.5131 0.8904 30 1 -0.3632 0.5148 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6758 1.9566 -0.8894 34 1 1.6773 1.9560 0.8905 35 1 3.8050 -3.4879 1.4483 36 1 3.6854 -2.0403 2.4901 37 1 5.7768 -3.6456 0.5531 38 1 8.1619 -3.8403 -0.6862 39 1 8.4142 -3.8312 1.0758 40 1 9.8284 -1.8059 0.8637 41 1 9.5765 -1.8143 -0.8983 42 1 10.6260 -4.0561 -1.0384 43 1 10.8782 -4.0483 0.7235 44 1 12.2928 -2.0223 0.5112 45 1 12.0401 -2.0308 -1.2507 46 1 15.6703 -1.5385 -0.8748 47 1 4.3604 -0.2840 -0.8441 48 1 4.8386 -1.8821 -1.4807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885196059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:41 Heat of formation + Delta-G solvation = -156.932705 kcal Electronic energy + Delta-G solvation = -25821.663876 eV Core-core repulsion = 22068.397654 eV Total energy + Delta-G solvation = -3753.266222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66628 -39.71905 -36.94546 -35.59959 -34.86190 -33.75182 -32.61636 -31.63595 -29.69612 -28.98547 -27.83291 -27.04586 -25.36329 -22.57739 -21.89431 -21.62779 -20.81100 -20.25181 -19.94532 -17.75879 -17.08589 -16.72816 -16.20314 -16.03703 -15.88677 -15.60227 -15.27043 -14.60454 -14.43277 -14.06303 -13.79409 -13.74875 -13.65076 -13.11653 -12.75188 -12.65461 -12.60169 -12.50004 -12.45629 -12.20659 -12.10338 -11.90922 -11.67094 -11.57352 -11.50250 -11.11437 -10.97340 -10.60824 -10.52772 -10.49436 -10.39829 -10.01172 -9.77864 -9.60068 -9.20954 -9.20305 -8.96776 -8.29396 -5.94097 -3.96609 2.67423 2.86322 3.05797 3.34660 3.40654 3.43812 3.49395 3.85122 4.03297 4.31532 4.47685 4.49765 4.53100 4.58793 4.81110 4.86633 4.89223 4.99173 5.03251 5.11963 5.19922 5.25016 5.31010 5.32928 5.37818 5.40802 5.41417 5.50230 5.60432 5.67009 5.74730 5.78978 5.88387 5.91423 6.15040 6.31123 6.36053 6.56206 6.85007 6.85336 7.03451 7.21324 7.40871 7.75402 7.91524 8.07406 8.25921 8.49124 9.11125 9.66911 11.17203 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.041750 B = 0.001879 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.493961 B =14901.524117 C =15167.376088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.254 3.746 3 C -0.159 4.159 4 O -0.364 6.364 5 C 0.051 3.949 6 H 0.099 0.901 7 C -0.127 4.127 8 C 0.146 3.854 9 H 0.097 0.903 10 N -0.735 5.735 11 C 0.512 3.488 12 O -0.532 6.532 13 C -0.139 4.139 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.151 4.151 26 C 0.056 3.944 27 H 0.120 0.880 28 O -0.371 6.371 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.085 0.915 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.672 -1.224 3.078 32.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.177 3.823 3 C -0.216 4.216 4 O -0.285 6.285 5 C -0.007 4.007 6 H 0.116 0.884 7 C -0.165 4.165 8 C 0.041 3.959 9 H 0.115 0.885 10 N -0.389 5.389 11 C 0.299 3.701 12 O -0.407 6.407 13 C -0.179 4.179 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.190 4.190 26 C -0.001 4.001 27 H 0.138 0.862 28 O -0.293 6.293 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -32.383 -0.041 3.043 32.526 hybrid contribution 0.713 -1.199 -0.137 1.401 sum -31.670 -1.240 2.906 31.828 Atomic orbital electron populations 1.22369 0.93840 1.03159 1.03289 1.23290 0.92850 0.91557 0.74558 1.22170 1.02806 0.93520 1.03137 1.88912 1.83727 1.24849 1.31016 1.24162 0.96873 0.86207 0.93460 0.88361 1.22433 0.91771 1.01369 1.00927 1.21259 0.86182 0.93581 0.94868 0.88540 1.46318 1.07039 1.09707 1.75788 1.21145 0.83648 0.90284 0.74973 1.90713 1.84131 1.17086 1.48793 1.21801 0.94045 0.98251 1.03768 1.21450 0.91689 0.98292 1.02720 1.21647 0.95650 0.97533 0.99956 1.19100 0.90142 0.95363 0.97170 1.21285 0.92316 0.93065 1.49193 0.92761 1.25048 0.98943 0.95074 0.95558 1.69976 1.20879 1.12313 1.50263 0.86606 0.81936 0.81267 0.78236 1.20725 1.21259 1.19943 1.22946 0.94266 1.03626 0.98197 1.24230 0.91483 0.89958 0.94450 0.86234 1.88752 1.68148 1.42640 1.29714 0.90632 0.90746 0.91940 0.91230 0.90526 0.90725 0.89221 0.89031 0.76667 0.89153 0.89134 0.91812 0.91829 0.93501 0.93487 0.96583 0.96595 0.93053 0.89637 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.22 37.16 0.34 -0.77 16 2 C 0.25 2.17 1.50 -26.73 -0.04 2.13 16 3 C -0.16 -1.27 9.22 37.16 0.34 -0.93 16 4 O -0.36 -3.30 10.50 -59.02 -0.62 -3.92 16 5 C 0.05 0.35 4.51 -25.25 -0.11 0.23 16 6 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 7 C -0.13 -0.80 6.17 -26.01 -0.16 -0.97 16 8 C 0.15 1.34 3.25 -67.35 -0.22 1.12 16 9 H 0.10 1.15 7.57 -51.93 -0.39 0.76 16 10 N -0.73 -6.73 4.96 -53.25 -0.26 -7.00 16 11 C 0.51 6.87 7.82 -10.98 -0.09 6.79 16 12 O -0.53 -9.58 15.64 5.56 0.09 -9.49 16 13 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 14 C -0.10 -1.85 4.50 -26.74 -0.12 -1.97 16 15 C -0.11 -2.27 5.15 -26.74 -0.14 -2.41 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.15 -1.42 6.28 -26.12 -0.16 -1.58 16 26 C 0.06 0.43 4.65 -25.30 -0.12 0.32 16 27 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 28 O -0.37 -3.55 10.29 -59.02 -0.61 -4.16 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.36 7.63 -51.93 -0.40 -0.04 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 2.35 8.29 -40.82 -0.34 2.01 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.09 0.96 7.48 -51.93 -0.39 0.57 16 48 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -34.91 385.84 -9.68 -44.59 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -8.63 Total: -2.40 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.18 Total: -13.49 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.47 Total: -33.91 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -1.14 Total: -17.57 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.91 -9.68 -44.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885196059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.343 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds