Wall clock time and date at job start Fri Apr 10 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46696 * 2 1 4 4 O 1.43221 * 109.49906 * 120.05620 * 2 1 3 5 5 C 1.43834 * 106.43654 * 101.20713 * 4 2 1 6 6 H 1.08994 * 112.58500 * 266.07731 * 5 4 2 7 7 C 1.53782 * 109.54187 * 140.05609 * 5 4 2 8 8 C 1.53611 * 106.07141 * 278.52746 * 7 5 4 9 9 H 1.09000 * 109.89650 * 101.44190 * 8 7 5 10 10 N 1.46500 * 109.89617 * 222.48433 * 8 7 5 11 11 C 1.34777 * 120.00376 * 205.00015 * 10 8 7 12 12 O 1.21279 * 119.99633 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00115 * 179.97438 * 11 10 8 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 C 1.53499 * 107.19330 * 341.87697 * 8 7 5 26 26 C 1.53674 * 107.38379 * 0.13754 * 25 8 7 27 27 H 1.09000 * 112.76890 * 254.48068 * 26 25 8 28 28 O 1.43075 * 109.50231 * 239.94391 * 2 1 3 29 29 H 1.09001 * 109.47009 * 299.95177 * 1 2 3 30 30 H 1.09002 * 109.46571 * 59.94208 * 1 2 3 31 31 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47206 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46973 * 300.05666 * 3 2 1 34 34 H 1.09005 * 109.46837 * 60.05100 * 3 2 1 35 35 H 1.08995 * 110.12990 * 159.37227 * 7 5 4 36 36 H 1.09000 * 110.12994 * 37.67639 * 7 5 4 37 37 H 0.97004 * 119.99396 * 24.99788 * 10 8 7 38 38 H 1.09002 * 109.47060 * 60.00000 * 13 11 10 39 39 H 1.09001 * 109.46927 * 300.00196 * 13 11 10 40 40 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 41 41 H 1.09001 * 109.46832 * 300.00193 * 14 13 11 42 42 H 1.09002 * 109.47103 * 59.99753 * 15 14 13 43 43 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 44 44 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 45 45 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 46 46 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.86317 * 119.58800 * 25 8 7 48 48 H 1.09003 * 109.86117 * 240.68649 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0081 -0.6762 1.1685 5 6 2.3967 -1.9948 0.7453 6 1 1.5999 -2.7274 0.8735 7 6 3.6942 -2.4037 1.4625 8 6 4.8392 -1.7448 0.6785 9 1 5.1833 -0.8536 1.2033 10 7 5.9469 -2.6911 0.5242 11 6 7.2021 -2.2354 0.3421 12 8 7.4147 -1.0419 0.3064 13 6 8.3416 -3.2088 0.1839 14 6 9.6489 -2.4371 -0.0066 15 6 10.8057 -3.4252 -0.1679 16 6 12.1129 -2.6535 -0.3590 17 6 13.2524 -3.6269 -0.5172 18 1 13.0632 -4.6897 -0.4850 19 6 14.5365 -3.1607 -0.7040 20 7 14.7668 -1.8665 -0.7437 21 14 15.9488 -4.3673 -0.9008 22 1 16.1240 -4.6940 -2.3388 23 1 17.1973 -3.7580 -0.3760 24 1 15.6481 -5.6091 -0.1441 25 6 4.2835 -1.3618 -0.7001 26 6 2.8078 -1.7892 -0.7354 27 1 2.6409 -2.6796 -1.3415 28 8 2.0077 -0.6755 -1.1673 29 1 -0.3633 0.5131 0.8904 30 1 -0.3632 0.5148 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6758 1.9566 -0.8894 34 1 1.6773 1.9560 0.8905 35 1 3.8050 -3.4879 1.4483 36 1 3.6854 -2.0403 2.4901 37 1 5.7768 -3.6456 0.5531 38 1 8.1619 -3.8403 -0.6862 39 1 8.4142 -3.8312 1.0758 40 1 9.8284 -1.8059 0.8637 41 1 9.5765 -1.8143 -0.8983 42 1 10.6260 -4.0561 -1.0384 43 1 10.8782 -4.0483 0.7235 44 1 12.2928 -2.0223 0.5112 45 1 12.0401 -2.0308 -1.2507 46 1 15.6703 -1.5385 -0.8748 47 1 4.3604 -0.2840 -0.8441 48 1 4.8386 -1.8821 -1.4807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885196059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:40 Heat of formation + Delta-G solvation = -180.295351 kcal Electronic energy + Delta-G solvation = -25822.676956 eV Core-core repulsion = 22068.397654 eV Total energy + Delta-G solvation = -3754.279303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.30131 -40.75134 -37.77871 -36.57692 -36.24149 -34.65524 -34.50020 -32.45828 -31.30837 -29.61854 -28.42382 -28.10167 -26.88826 -24.23501 -22.54982 -22.28743 -21.88471 -21.48004 -21.20635 -18.45837 -18.34822 -18.00868 -17.48587 -16.89720 -16.80470 -16.53572 -16.44412 -15.99263 -15.52249 -15.16464 -14.82552 -14.56764 -14.48256 -14.32374 -13.82962 -13.72686 -13.57176 -13.36571 -13.24195 -13.20989 -13.09821 -13.05983 -12.81806 -12.67646 -12.66291 -12.33327 -12.15911 -12.13504 -12.09708 -11.78217 -11.37435 -11.35056 -11.22919 -11.15765 -10.79673 -10.56683 -10.55085 -10.09461 -8.18594 -6.30929 1.40391 1.42850 1.53913 1.64793 2.14869 2.29413 2.42177 2.90872 3.14020 3.24483 3.45131 3.74032 3.86138 3.89987 3.92462 3.96602 4.07741 4.16203 4.22510 4.27685 4.33063 4.49557 4.50868 4.62985 4.66304 4.68551 4.70482 4.74864 4.79284 4.86104 4.88059 4.96910 4.99770 5.00162 5.14163 5.15463 5.20038 5.22304 5.34024 5.38146 5.53467 5.58617 5.78298 5.88233 6.25239 6.25393 6.58209 6.87729 7.31070 7.38713 8.93647 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.041750 B = 0.001879 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.493961 B =14901.524117 C =15167.376088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.246 3.754 3 C -0.160 4.160 4 O -0.383 6.383 5 C 0.051 3.949 6 H 0.129 0.871 7 C -0.117 4.117 8 C 0.146 3.854 9 H 0.060 0.940 10 N -0.710 5.710 11 C 0.510 3.490 12 O -0.590 6.590 13 C -0.127 4.127 14 C -0.097 4.097 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.258 1.258 25 C -0.149 4.149 26 C 0.057 3.943 27 H 0.147 0.853 28 O -0.389 6.389 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.421 0.579 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.062 0.938 44 H -0.016 1.016 45 H -0.017 1.017 46 H 0.263 0.737 47 H 0.054 0.946 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.387 -4.893 3.358 34.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.170 3.830 3 C -0.218 4.218 4 O -0.304 6.304 5 C -0.006 4.006 6 H 0.146 0.854 7 C -0.154 4.154 8 C 0.041 3.959 9 H 0.078 0.922 10 N -0.364 5.364 11 C 0.298 3.702 12 O -0.469 6.469 13 C -0.167 4.167 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.182 1.182 25 C -0.188 4.188 26 C 0.000 4.000 27 H 0.165 0.835 28 O -0.310 6.310 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.106 0.894 37 H 0.259 0.741 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -34.149 -3.768 3.331 34.517 hybrid contribution 1.248 0.023 -0.231 1.269 sum -32.901 -3.744 3.099 33.258 Atomic orbital electron populations 1.22328 0.92122 1.03787 1.03870 1.23473 0.94043 0.91259 0.74267 1.22197 1.01399 0.94267 1.03920 1.88896 1.84011 1.26118 1.31406 1.24407 0.97789 0.85922 0.92505 0.85357 1.22419 0.89969 1.03141 0.99894 1.21214 0.86922 0.92819 0.94990 0.92172 1.46054 1.05625 1.10950 1.73742 1.21273 0.85028 0.89442 0.74422 1.90708 1.85086 1.19456 1.51699 1.21678 0.90728 0.97683 1.06567 1.21248 0.93864 0.97728 1.00691 1.21445 0.93180 0.97413 1.01236 1.19071 0.93582 0.95111 0.94220 1.21762 0.93201 0.93939 1.49021 0.91455 1.26120 1.02382 0.97098 0.94965 1.70138 1.21740 1.14757 1.51231 0.85362 0.77619 0.78854 0.78679 1.19717 1.20991 1.18235 1.22870 0.96184 1.01702 0.98081 1.24392 0.89633 0.90208 0.95788 0.83527 1.88736 1.68365 1.43416 1.30515 0.89914 0.90307 0.91261 0.93406 0.89845 0.89857 0.85643 0.89376 0.74061 0.86118 0.86085 0.94078 0.94129 0.91964 0.91946 0.99805 0.99837 0.92884 0.92688 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.22 71.98 0.66 -1.25 16 2 C 0.25 4.06 1.50 30.60 0.05 4.10 16 3 C -0.16 -2.69 9.22 71.98 0.66 -2.02 16 4 O -0.38 -6.56 10.50 -126.23 -1.33 -7.88 16 5 C 0.05 0.57 4.51 31.56 0.14 0.71 16 6 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 7 C -0.12 -1.18 6.17 31.06 0.19 -0.99 16 8 C 0.15 2.60 3.25 45.36 0.15 2.75 16 9 H 0.06 1.54 7.57 -2.39 -0.02 1.52 16 10 N -0.71 -11.68 4.96 -440.76 -2.19 -13.86 16 11 C 0.51 13.39 7.82 87.66 0.69 14.08 16 12 O -0.59 -22.31 15.64 -3.03 -0.05 -22.35 16 13 C -0.13 -3.00 5.70 29.85 0.17 -2.83 16 14 C -0.10 -3.52 4.50 30.59 0.14 -3.38 16 15 C -0.10 -3.88 5.15 30.59 0.16 -3.73 16 16 C 0.02 0.96 4.97 29.85 0.15 1.11 16 17 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16 18 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 19 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 20 N -0.94 -59.52 13.29 21.45 0.28 -59.24 16 21 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.15 -2.81 6.28 30.99 0.19 -2.62 16 26 C 0.06 0.78 4.65 31.52 0.15 0.92 16 27 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 28 O -0.39 -7.16 10.29 -126.23 -1.30 -8.46 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.98 7.70 -2.39 -0.02 0.96 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.13 0.40 7.63 -2.39 -0.02 0.38 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.42 3.29 8.29 -92.71 -0.77 2.52 16 38 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.04 1.64 8.10 -2.39 -0.02 1.63 16 41 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 44 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 46 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.05 1.37 7.48 -2.39 -0.02 1.35 16 48 H 0.08 1.50 7.90 -2.39 -0.02 1.48 16 Total: -1.00 -80.81 385.84 1.80 -79.01 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.16 Total: 10.28 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.19 Total: -24.50 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.90 Total: -73.10 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -2.67 Total: -38.69 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -80.81 1.80 -79.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885196059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.284 kcal (2) G-P(sol) polarization free energy of solvation -80.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds