Wall clock time and date at job start Fri Apr 10 2020 22:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46855 * 2 1 4 4 C 1.52993 * 109.47156 * 239.99700 * 2 1 3 5 5 N 1.46503 * 109.47062 * 119.99592 * 2 1 3 6 6 C 1.45750 * 117.94939 * 239.85274 * 5 2 1 7 7 C 1.52912 * 110.48974 * 199.07399 * 6 5 2 8 8 C 1.53323 * 108.58732 * 309.21011 * 7 6 5 9 9 C 1.53066 * 108.43700 * 67.67216 * 8 7 6 10 10 H 1.08998 * 109.40289 * 71.04777 * 9 8 7 11 11 C 1.50699 * 109.40536 * 190.88104 * 9 8 7 12 12 O 1.20831 * 119.99765 * 0.17290 * 11 9 8 13 13 O 1.34230 * 120.00308 * 180.16835 * 11 9 8 14 14 C 1.45196 * 117.00093 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47423 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47616 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47196 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00279 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99551 * 179.97438 * 17 16 15 20 20 N 1.31526 * 119.99614 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00558 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47160 * 270.00142 * 21 19 17 23 23 H 1.48498 * 109.46883 * 29.99836 * 21 19 17 24 24 H 1.48495 * 109.47354 * 149.99967 * 21 19 17 25 25 C 1.33352 * 117.94615 * 59.86802 * 5 2 1 26 26 O 1.21288 * 118.24249 * 357.78232 * 25 5 2 27 27 H 1.08993 * 109.47011 * 293.24181 * 1 2 3 28 28 H 1.09000 * 109.46599 * 53.24088 * 1 2 3 29 29 H 1.09000 * 109.46792 * 173.23783 * 1 2 3 30 30 H 1.09002 * 109.46945 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47291 * 299.99363 * 3 2 1 32 32 H 1.08998 * 109.47334 * 59.99948 * 3 2 1 33 33 H 1.09000 * 109.47322 * 299.99982 * 4 2 1 34 34 H 1.08996 * 109.47296 * 60.00450 * 4 2 1 35 35 H 1.09002 * 109.46972 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.30057 * 319.38934 * 6 5 2 37 37 H 1.09002 * 109.30373 * 78.75704 * 6 5 2 38 38 H 1.09002 * 109.60380 * 69.00216 * 7 6 5 39 39 H 1.09003 * 109.60896 * 189.32275 * 7 6 5 40 40 H 1.09000 * 109.74744 * 307.88857 * 8 7 6 41 41 H 1.09008 * 109.59984 * 187.36375 * 8 7 6 42 42 H 1.08999 * 109.47327 * 59.99924 * 14 13 11 43 43 H 1.09005 * 109.46813 * 300.00011 * 14 13 11 44 44 H 1.08999 * 109.47072 * 59.99596 * 15 14 13 45 45 H 1.09006 * 109.46655 * 300.00144 * 15 14 13 46 46 H 1.08999 * 109.47328 * 59.99633 * 16 15 14 47 47 H 1.09005 * 109.46619 * 299.99839 * 16 15 14 48 48 H 0.97001 * 119.99471 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0184 -0.6905 1.1962 6 6 2.8557 0.0595 2.1240 7 6 3.6430 -0.8932 3.0244 8 6 2.6670 -1.9035 3.6388 9 6 2.1372 -2.8057 2.5216 10 1 2.9324 -3.4713 2.1859 11 6 0.9855 -3.6255 3.0438 12 8 0.6241 -3.4983 4.1898 13 8 0.3610 -4.4968 2.2359 14 6 -0.7401 -5.2519 2.8062 15 6 -1.3223 -6.1862 1.7437 16 6 -2.4830 -6.9815 2.3444 17 6 -3.0567 -7.9013 1.2976 18 1 -2.6359 -7.9168 0.3031 19 6 -4.1190 -8.7231 1.6095 20 7 -4.6200 -9.5255 0.6957 21 14 -4.8475 -8.6959 3.3293 22 1 -4.1480 -9.6929 4.1790 23 1 -4.6811 -7.3419 3.9160 24 1 -6.2924 -9.0313 3.2603 25 6 1.6691 -1.9660 1.3679 26 8 0.9339 -2.4750 0.5485 27 1 -0.3633 0.4055 0.9442 28 1 -0.3632 0.6150 -0.8234 29 1 -0.3633 -1.0205 -0.1210 30 1 3.1300 1.4426 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1391 35 1 3.1301 -0.7217 -1.2489 36 1 3.5520 0.6800 1.5599 37 1 2.2256 0.7001 2.7409 38 1 4.3924 -1.4197 2.4333 39 1 4.1336 -0.3267 3.8160 40 1 1.8373 -1.3752 4.1085 41 1 3.1863 -2.5075 4.3831 42 1 -1.5134 -4.5643 3.1489 43 1 -0.3786 -5.8412 3.6490 44 1 -0.5489 -6.8738 1.4014 45 1 -1.6837 -5.5972 0.9007 46 1 -3.2563 -6.2937 2.6864 47 1 -2.1219 -7.5705 3.1876 48 1 -5.3676 -10.1034 0.9151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885476693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:43 Heat of formation + Delta-G solvation = -132.379682 kcal Electronic energy + Delta-G solvation = -26972.272140 eV Core-core repulsion = 23220.070617 eV Total energy + Delta-G solvation = -3752.201523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54189 -40.02885 -37.06902 -36.92552 -35.95900 -33.99701 -32.11757 -31.72371 -30.38171 -28.22123 -27.46129 -27.44328 -25.24691 -23.30576 -22.93317 -21.50492 -20.42989 -20.06162 -18.57479 -17.83995 -17.16514 -16.89269 -16.55678 -16.22132 -15.93945 -15.50683 -14.89187 -14.55881 -14.22178 -14.05839 -13.93789 -13.75876 -13.60497 -13.26275 -12.70846 -12.60602 -12.49944 -12.46498 -12.26712 -12.17254 -11.88746 -11.86166 -11.72518 -11.54238 -11.46682 -11.23577 -11.14236 -10.99414 -10.87167 -10.58096 -10.35463 -9.94720 -9.73202 -9.66479 -9.57557 -9.18983 -8.91946 -8.52033 -6.02262 -4.00712 2.01354 2.35281 2.66658 2.93913 3.33043 3.40309 3.44575 4.03819 4.19898 4.27929 4.36255 4.47198 4.58683 4.61090 4.73759 4.83385 4.90318 4.91571 5.05732 5.18337 5.26548 5.31054 5.35698 5.39350 5.47800 5.51166 5.53631 5.53938 5.56739 5.57879 5.71714 5.76260 5.80343 5.94775 6.08225 6.22702 6.40187 6.42245 6.48865 6.72704 6.87971 7.17878 7.29534 7.39701 7.77087 7.88515 7.95444 8.55738 9.02945 9.59407 11.11070 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002901 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.408759 B = 9648.123537 C =10499.376337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.166 3.834 3 C -0.154 4.154 4 C -0.164 4.164 5 N -0.595 5.595 6 C 0.105 3.895 7 C -0.135 4.135 8 C -0.109 4.109 9 C -0.099 4.099 10 H 0.138 0.862 11 C 0.476 3.524 12 O -0.509 6.509 13 O -0.331 6.331 14 C 0.066 3.934 15 C -0.100 4.100 16 C -0.010 4.010 17 C -0.519 4.519 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.265 1.265 24 H -0.287 1.287 25 C 0.522 3.478 26 O -0.508 6.508 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.018 0.982 47 H 0.014 0.986 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.573 25.148 2.741 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.082 3.918 3 C -0.212 4.212 4 C -0.222 4.222 5 N -0.330 5.330 6 C -0.018 4.018 7 C -0.172 4.172 8 C -0.147 4.147 9 C -0.121 4.121 10 H 0.155 0.845 11 C 0.317 3.683 12 O -0.398 6.398 13 O -0.245 6.245 14 C -0.007 4.007 15 C -0.138 4.138 16 C -0.048 4.048 17 C -0.557 4.557 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.190 1.190 24 H -0.213 1.213 25 C 0.308 3.692 26 O -0.382 6.382 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.889 24.732 2.613 31.845 hybrid contribution -0.439 -0.103 1.092 1.181 sum 19.449 24.629 3.705 31.601 Atomic orbital electron populations 1.22271 0.93756 1.04751 1.01554 1.20480 0.94857 0.91708 0.84746 1.22193 1.01361 0.94597 1.03033 1.22237 1.00565 1.03383 0.96043 1.47461 1.51012 1.10781 1.23697 1.21552 0.93844 0.94669 0.91688 1.21916 0.98014 0.97675 0.99638 1.21600 0.99972 0.96975 0.96150 1.21167 0.97077 0.97258 0.96634 0.84461 1.22668 0.82604 0.78847 0.84139 1.90661 1.64189 1.65750 1.19213 1.86622 1.45351 1.49236 1.43331 1.23507 0.85750 0.93451 0.98038 1.21533 0.98757 0.96474 0.97005 1.19521 0.92996 0.95249 0.96990 1.21076 1.15609 1.20570 0.98481 0.90759 1.25019 0.96411 0.94960 0.97070 1.69920 1.25489 1.25009 1.33739 0.86780 0.78360 0.78985 0.85204 1.20229 1.18983 1.21313 1.19299 0.81449 0.81848 0.86617 1.90781 1.34574 1.70013 1.42871 0.92944 0.91915 0.89489 0.91808 0.90943 0.91858 0.89720 0.91759 0.92948 0.89906 0.91543 0.90591 0.89015 0.89763 0.89592 0.91697 0.91649 0.91586 0.91357 0.96345 0.96790 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 8.24 37.16 0.31 -1.43 16 2 C 0.17 1.46 1.03 -131.82 -0.14 1.32 16 3 C -0.15 -0.86 7.31 37.16 0.27 -0.59 16 4 C -0.16 -1.53 8.36 37.15 0.31 -1.22 16 5 N -0.59 -5.42 2.79 -160.09 -0.45 -5.86 16 6 C 0.11 0.59 5.24 -4.49 -0.02 0.57 16 7 C -0.13 -0.65 6.02 -26.61 -0.16 -0.81 16 8 C -0.11 -0.87 4.77 -26.53 -0.13 -1.00 16 9 C -0.10 -1.10 2.86 -93.14 -0.27 -1.37 16 10 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 11 C 0.48 7.44 7.14 36.01 0.26 7.70 16 12 O -0.51 -8.83 15.54 -18.75 -0.29 -9.12 16 13 O -0.33 -5.99 9.18 -45.26 -0.42 -6.40 16 14 C 0.07 1.25 5.47 37.16 0.20 1.45 16 15 C -0.10 -2.15 5.53 -26.74 -0.15 -2.30 16 16 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 17 C -0.52 -15.28 9.66 -34.44 -0.33 -15.62 16 18 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 21 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.52 6.39 6.44 -11.87 -0.08 6.32 16 26 O -0.51 -8.11 11.18 -11.69 -0.13 -8.24 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.20 6.05 -51.93 -0.31 0.89 16 30 H 0.06 0.28 6.74 -51.93 -0.35 -0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 7.63 -51.93 -0.40 -0.07 16 33 H 0.08 1.05 6.01 -51.93 -0.31 0.74 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.32 6.02 -51.93 -0.31 0.00 16 37 H 0.07 0.35 8.04 -51.93 -0.42 -0.07 16 38 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 41 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 43 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 46 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 47 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -34.96 373.54 -8.03 -42.99 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -8.35 Total: -3.44 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -0.13 Total: -5.46 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.33 Total: -33.51 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.84 Total: -23.76 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.96 -8.03 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885476693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.391 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds