Wall clock time and date at job start Fri Apr 10 2020 22:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46855 * 2 1 4 4 C 1.52993 * 109.47156 * 239.99700 * 2 1 3 5 5 N 1.46503 * 109.47062 * 119.99592 * 2 1 3 6 6 C 1.45750 * 117.94939 * 239.85274 * 5 2 1 7 7 C 1.52912 * 110.48974 * 199.07399 * 6 5 2 8 8 C 1.53323 * 108.58732 * 309.21011 * 7 6 5 9 9 C 1.53066 * 108.43700 * 67.67216 * 8 7 6 10 10 H 1.08998 * 109.40289 * 71.04777 * 9 8 7 11 11 C 1.50699 * 109.40536 * 190.88104 * 9 8 7 12 12 O 1.20831 * 119.99765 * 0.17290 * 11 9 8 13 13 O 1.34230 * 120.00308 * 180.16835 * 11 9 8 14 14 C 1.45196 * 117.00093 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47423 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47616 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47196 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00279 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99551 * 179.97438 * 17 16 15 20 20 N 1.31526 * 119.99614 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00558 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47160 * 270.00142 * 21 19 17 23 23 H 1.48498 * 109.46883 * 29.99836 * 21 19 17 24 24 H 1.48495 * 109.47354 * 149.99967 * 21 19 17 25 25 C 1.33352 * 117.94615 * 59.86802 * 5 2 1 26 26 O 1.21288 * 118.24249 * 357.78232 * 25 5 2 27 27 H 1.08993 * 109.47011 * 293.24181 * 1 2 3 28 28 H 1.09000 * 109.46599 * 53.24088 * 1 2 3 29 29 H 1.09000 * 109.46792 * 173.23783 * 1 2 3 30 30 H 1.09002 * 109.46945 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47291 * 299.99363 * 3 2 1 32 32 H 1.08998 * 109.47334 * 59.99948 * 3 2 1 33 33 H 1.09000 * 109.47322 * 299.99982 * 4 2 1 34 34 H 1.08996 * 109.47296 * 60.00450 * 4 2 1 35 35 H 1.09002 * 109.46972 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.30057 * 319.38934 * 6 5 2 37 37 H 1.09002 * 109.30373 * 78.75704 * 6 5 2 38 38 H 1.09002 * 109.60380 * 69.00216 * 7 6 5 39 39 H 1.09003 * 109.60896 * 189.32275 * 7 6 5 40 40 H 1.09000 * 109.74744 * 307.88857 * 8 7 6 41 41 H 1.09008 * 109.59984 * 187.36375 * 8 7 6 42 42 H 1.08999 * 109.47327 * 59.99924 * 14 13 11 43 43 H 1.09005 * 109.46813 * 300.00011 * 14 13 11 44 44 H 1.08999 * 109.47072 * 59.99596 * 15 14 13 45 45 H 1.09006 * 109.46655 * 300.00144 * 15 14 13 46 46 H 1.08999 * 109.47328 * 59.99633 * 16 15 14 47 47 H 1.09005 * 109.46619 * 299.99839 * 16 15 14 48 48 H 0.97001 * 119.99471 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0184 -0.6905 1.1962 6 6 2.8557 0.0595 2.1240 7 6 3.6430 -0.8932 3.0244 8 6 2.6670 -1.9035 3.6388 9 6 2.1372 -2.8057 2.5216 10 1 2.9324 -3.4713 2.1859 11 6 0.9855 -3.6255 3.0438 12 8 0.6241 -3.4983 4.1898 13 8 0.3610 -4.4968 2.2359 14 6 -0.7401 -5.2519 2.8062 15 6 -1.3223 -6.1862 1.7437 16 6 -2.4830 -6.9815 2.3444 17 6 -3.0567 -7.9013 1.2976 18 1 -2.6359 -7.9168 0.3031 19 6 -4.1190 -8.7231 1.6095 20 7 -4.6200 -9.5255 0.6957 21 14 -4.8475 -8.6959 3.3293 22 1 -4.1480 -9.6929 4.1790 23 1 -4.6811 -7.3419 3.9160 24 1 -6.2924 -9.0313 3.2603 25 6 1.6691 -1.9660 1.3679 26 8 0.9339 -2.4750 0.5485 27 1 -0.3633 0.4055 0.9442 28 1 -0.3632 0.6150 -0.8234 29 1 -0.3633 -1.0205 -0.1210 30 1 3.1300 1.4426 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1391 35 1 3.1301 -0.7217 -1.2489 36 1 3.5520 0.6800 1.5599 37 1 2.2256 0.7001 2.7409 38 1 4.3924 -1.4197 2.4333 39 1 4.1336 -0.3267 3.8160 40 1 1.8373 -1.3752 4.1085 41 1 3.1863 -2.5075 4.3831 42 1 -1.5134 -4.5643 3.1489 43 1 -0.3786 -5.8412 3.6490 44 1 -0.5489 -6.8738 1.4014 45 1 -1.6837 -5.5972 0.9007 46 1 -3.2563 -6.2937 2.6864 47 1 -2.1219 -7.5705 3.1876 48 1 -5.3676 -10.1034 0.9151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885476693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:42 Heat of formation + Delta-G solvation = -153.350068 kcal Electronic energy + Delta-G solvation = -26973.181484 eV Core-core repulsion = 23220.070617 eV Total energy + Delta-G solvation = -3753.110868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.44827 -41.19892 -38.16625 -37.89413 -36.83595 -35.96909 -33.92185 -32.78889 -31.11966 -29.53487 -28.59739 -28.24149 -26.13153 -24.78656 -23.90342 -22.50589 -22.10810 -21.16258 -19.32874 -19.09646 -18.93078 -18.10908 -17.68880 -17.28305 -17.02913 -16.36594 -16.21983 -15.94658 -15.29418 -15.22620 -14.84801 -14.77802 -14.51148 -14.46471 -14.35697 -13.88698 -13.77969 -13.27456 -13.20411 -13.08334 -12.88716 -12.85625 -12.62758 -12.53884 -12.48770 -12.19252 -12.13502 -12.04317 -12.02029 -11.87122 -11.79286 -11.78000 -11.52354 -11.43515 -11.40026 -10.80258 -10.47197 -9.64608 -8.32910 -6.38556 0.86503 1.32009 1.34275 1.36596 1.48731 1.78018 1.95116 2.33678 3.01636 3.30775 3.34005 3.64773 3.76805 3.92799 3.94236 3.96382 3.97345 4.05245 4.11203 4.18655 4.31915 4.42214 4.57358 4.66423 4.67838 4.68125 4.69855 4.78033 4.81958 4.85714 4.89765 4.95168 5.00082 5.02835 5.06672 5.23932 5.26034 5.29812 5.32710 5.41198 5.43411 5.45502 5.58729 5.67931 6.22918 6.42042 6.58221 6.68903 7.11074 7.25717 8.84038 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002901 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.408759 B = 9648.123537 C =10499.376337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 C -0.147 4.147 4 C -0.160 4.160 5 N -0.587 5.587 6 C 0.094 3.906 7 C -0.125 4.125 8 C -0.105 4.105 9 C -0.095 4.095 10 H 0.158 0.842 11 C 0.471 3.529 12 O -0.528 6.528 13 O -0.346 6.346 14 C 0.074 3.926 15 C -0.091 4.091 16 C -0.006 4.006 17 C -0.537 4.537 18 H 0.031 0.969 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.953 3.047 22 H -0.262 1.262 23 H -0.248 1.248 24 H -0.281 1.281 25 C 0.513 3.487 26 O -0.557 6.557 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.024 0.976 47 H 0.029 0.971 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.770 27.867 5.038 36.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.077 3.923 3 C -0.204 4.204 4 C -0.218 4.218 5 N -0.319 5.319 6 C -0.027 4.027 7 C -0.162 4.162 8 C -0.143 4.143 9 C -0.117 4.117 10 H 0.176 0.824 11 C 0.314 3.686 12 O -0.417 6.417 13 O -0.261 6.261 14 C 0.001 3.999 15 C -0.128 4.128 16 C -0.043 4.043 17 C -0.575 4.575 18 H 0.050 0.950 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.776 3.224 22 H -0.187 1.187 23 H -0.171 1.171 24 H -0.206 1.206 25 C 0.300 3.700 26 O -0.436 6.436 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.132 27.503 4.924 35.644 hybrid contribution -1.093 -0.920 0.263 1.452 sum 21.040 26.584 5.187 34.297 Atomic orbital electron populations 1.22226 0.95636 1.02354 1.01931 1.20603 0.93553 0.93770 0.84414 1.22155 1.02555 0.91705 1.03965 1.22172 1.01301 1.01351 0.97004 1.47586 1.50410 1.09799 1.24140 1.21935 0.94173 0.94881 0.91709 1.21946 0.97140 0.96859 1.00279 1.21661 1.00211 0.97144 0.95245 1.21369 0.95460 0.97350 0.97527 0.82435 1.23576 0.83037 0.78224 0.83773 1.90638 1.64959 1.66177 1.19965 1.86626 1.45228 1.50023 1.44267 1.23183 0.86431 0.93295 0.96992 1.21288 0.97822 0.96524 0.97193 1.19427 0.93997 0.94864 0.96045 1.21389 1.16125 1.21940 0.98054 0.95012 1.26041 0.96759 0.94246 1.02162 1.70072 1.26350 1.26096 1.36488 0.85612 0.77573 0.80137 0.79080 1.18670 1.17128 1.20647 1.19563 0.81170 0.82924 0.86359 1.90784 1.36887 1.71330 1.44561 0.93250 0.90460 0.93547 0.89804 0.90112 0.90927 0.93466 0.90753 0.91544 0.87013 0.90644 0.89517 0.85947 0.91305 0.88580 0.91802 0.90392 0.91922 0.92934 0.95811 0.95316 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.24 71.98 0.59 -2.90 16 2 C 0.16 2.61 1.03 3.60 0.00 2.61 16 3 C -0.15 -1.14 7.31 71.98 0.53 -0.61 16 4 C -0.16 -2.92 8.36 71.98 0.60 -2.31 16 5 N -0.59 -9.75 2.79 -779.58 -2.17 -11.92 16 6 C 0.09 0.71 5.24 86.49 0.45 1.16 16 7 C -0.12 -0.70 6.02 30.67 0.18 -0.52 16 8 C -0.10 -1.43 4.77 30.72 0.15 -1.28 16 9 C -0.10 -2.03 2.86 -12.43 -0.04 -2.07 16 10 H 0.16 2.64 8.14 -2.39 -0.02 2.62 16 11 C 0.47 14.73 7.14 71.24 0.51 15.24 16 12 O -0.53 -18.09 15.54 21.95 0.34 -17.75 16 13 O -0.35 -12.83 9.18 -45.69 -0.42 -13.25 16 14 C 0.07 2.84 5.47 71.98 0.39 3.24 16 15 C -0.09 -4.01 5.53 30.59 0.17 -3.84 16 16 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 17 C -0.54 -32.65 9.66 25.60 0.25 -32.40 16 18 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 19 C 0.00 0.29 5.47 84.65 0.46 0.76 16 20 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 21 Si 0.95 45.57 27.47 68.60 1.88 47.45 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 C 0.51 12.54 6.44 87.71 0.57 13.11 16 26 O -0.56 -18.86 11.18 13.43 0.15 -18.71 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.39 6.05 -2.39 -0.01 1.37 16 30 H 0.08 0.35 6.74 -2.39 -0.02 0.33 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.46 7.63 -2.39 -0.02 0.45 16 33 H 0.05 1.24 6.01 -2.39 -0.01 1.23 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.11 0.27 6.02 -2.39 -0.01 0.25 16 37 H 0.08 0.50 8.04 -2.39 -0.02 0.48 16 38 H 0.09 0.38 8.12 -2.39 -0.02 0.36 16 39 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.07 1.17 7.72 -2.39 -0.02 1.15 16 41 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 43 H 0.08 2.77 8.13 -2.38 -0.02 2.75 16 44 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 46 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 47 H 0.03 1.34 7.57 -2.38 -0.02 1.33 16 48 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -80.62 373.54 5.89 -74.73 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.87 Total: 10.56 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.94 Total: -10.00 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -1.87 Total: -73.04 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: 0.07 Total: -49.71 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -80.62 5.89 -74.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885476693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.618 kcal (2) G-P(sol) polarization free energy of solvation -80.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds