Wall clock time and date at job start Fri Apr 10 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47451 * 2 1 4 4 C 1.53003 * 109.46950 * 240.00188 * 2 1 3 5 5 N 1.46501 * 109.47282 * 120.00439 * 2 1 3 6 6 C 1.45755 * 117.94586 * 238.19431 * 5 2 1 7 7 C 1.52922 * 110.48685 * 160.89972 * 6 5 2 8 8 C 1.53289 * 108.61107 * 50.76375 * 7 6 5 9 9 C 1.53069 * 108.45079 * 292.36146 * 8 7 6 10 10 H 1.08996 * 109.40001 * 288.94433 * 9 8 7 11 11 C 1.50703 * 109.40350 * 169.11355 * 9 8 7 12 12 O 1.20823 * 119.99802 * 359.83003 * 11 9 8 13 13 O 1.34228 * 119.99685 * 179.55334 * 11 9 8 14 14 C 1.45201 * 116.99519 * 180.27612 * 13 11 9 15 15 C 1.53000 * 109.46694 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.46914 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47165 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99920 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00130 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99921 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00163 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47062 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47138 * 120.00000 * 21 19 17 24 24 H 1.48496 * 109.47063 * 240.00303 * 21 19 17 25 25 C 1.33357 * 117.94766 * 58.16478 * 5 2 1 26 26 O 1.21282 * 118.24229 * 2.25381 * 25 5 2 27 27 H 1.08998 * 109.46852 * 293.25716 * 1 2 3 28 28 H 1.09007 * 109.47068 * 53.25444 * 1 2 3 29 29 H 1.08995 * 109.47193 * 173.25504 * 1 2 3 30 30 H 1.08999 * 109.47003 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46902 * 299.99974 * 3 2 1 32 32 H 1.08998 * 109.46887 * 60.00004 * 3 2 1 33 33 H 1.09011 * 109.46796 * 300.00129 * 4 2 1 34 34 H 1.09001 * 109.47492 * 59.99971 * 4 2 1 35 35 H 1.08999 * 109.47301 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.30253 * 281.20783 * 6 5 2 37 37 H 1.09005 * 109.30116 * 40.58687 * 6 5 2 38 38 H 1.08998 * 109.60460 * 170.50865 * 7 6 5 39 39 H 1.09009 * 109.60056 * 290.83205 * 7 6 5 40 40 H 1.09007 * 109.59363 * 172.66418 * 8 7 6 41 41 H 1.09001 * 109.73171 * 52.14718 * 8 7 6 42 42 H 1.09000 * 109.46952 * 299.99795 * 14 13 11 43 43 H 1.08992 * 109.47316 * 60.00354 * 14 13 11 44 44 H 1.08992 * 109.47123 * 299.99818 * 15 14 13 45 45 H 1.09002 * 109.47394 * 60.00499 * 15 14 13 46 46 H 1.09006 * 109.47126 * 299.99992 * 16 15 14 47 47 H 1.08997 * 109.47394 * 59.99657 * 16 15 14 48 48 H 0.96994 * 120.00263 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 2.8859 0.0480 2.1051 7 6 2.9122 -0.6196 3.4806 8 6 3.2174 -2.1103 3.2952 9 6 2.0265 -2.7646 2.5904 10 1 1.1822 -2.8152 3.2778 11 6 2.4043 -4.1579 2.1580 12 8 3.5123 -4.5819 2.3871 13 8 1.5081 -4.9298 1.5234 14 6 1.9393 -6.2628 1.1419 15 6 0.7918 -6.9871 0.4350 16 6 1.2464 -8.3915 0.0323 17 6 0.1164 -9.1047 -0.6644 18 1 -0.8310 -8.6060 -0.8062 19 6 0.2921 -10.3938 -1.1208 20 7 1.4456 -11.0012 -0.9477 21 14 -1.1089 -11.2782 -1.9839 22 1 -2.2921 -10.3834 -2.0515 23 1 -0.6886 -11.6470 -3.3596 24 1 -1.4594 -12.5069 -1.2272 25 6 1.6409 -1.9557 1.3853 26 8 0.9488 -2.4808 0.5389 27 1 -0.3633 0.4058 0.9442 28 1 -0.3633 0.6149 -0.8235 29 1 -0.3633 -1.0205 -0.1207 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6765 -1.7490 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7217 -1.2491 36 1 3.8965 0.0735 1.6976 37 1 2.5159 1.0683 2.2068 38 1 3.6871 -0.1610 4.0949 39 1 1.9428 -0.4989 3.9644 40 1 3.3688 -2.5764 4.2689 41 1 4.1143 -2.2295 2.6874 42 1 2.7925 -6.1895 0.4674 43 1 2.2273 -6.8205 2.0329 44 1 -0.0615 -7.0603 1.1090 45 1 0.5042 -6.4293 -0.4562 46 1 2.0997 -8.3178 -0.6419 47 1 1.5344 -8.9496 0.9232 48 1 1.5691 -11.9083 -1.2684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885476694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:44 Heat of formation + Delta-G solvation = -156.174093 kcal Electronic energy + Delta-G solvation = -26916.347590 eV Core-core repulsion = 23163.114264 eV Total energy + Delta-G solvation = -3753.233327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44877 -41.19989 -38.16464 -37.89004 -36.83697 -35.97195 -33.74826 -32.77111 -31.10188 -29.18778 -28.53355 -28.23421 -26.16432 -25.01419 -23.92306 -22.52493 -22.21422 -21.16721 -19.32605 -19.05284 -18.59241 -18.09747 -17.65568 -17.27562 -17.02300 -16.51415 -16.26746 -15.91490 -15.28703 -15.18991 -14.90081 -14.57396 -14.50152 -14.36889 -14.15016 -13.79605 -13.78828 -13.25813 -13.20060 -13.07242 -12.87314 -12.85192 -12.57400 -12.52987 -12.48642 -12.37585 -12.15063 -12.11993 -12.00933 -11.87996 -11.86401 -11.77383 -11.46797 -11.45955 -11.24635 -10.60791 -10.47063 -9.64320 -8.24620 -6.36397 0.86520 1.31095 1.39097 1.39734 1.53834 1.77843 1.95220 2.39406 3.08778 3.30475 3.34060 3.65071 3.76677 3.92580 3.94455 3.97857 3.99080 4.05904 4.11874 4.18402 4.34910 4.42263 4.57778 4.67721 4.68816 4.73508 4.78034 4.80678 4.82636 4.86914 4.95740 5.00087 5.01848 5.03186 5.07034 5.24189 5.28945 5.32196 5.36615 5.42139 5.46849 5.58842 5.68492 5.76327 6.16251 6.41964 6.57824 6.78652 7.10991 7.32938 8.88032 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.002801 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.205987 B = 9995.382514 C =10972.812537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 C -0.146 4.146 4 C -0.164 4.164 5 N -0.586 5.586 6 C 0.094 3.906 7 C -0.124 4.124 8 C -0.106 4.106 9 C -0.094 4.094 10 H 0.160 0.840 11 C 0.469 3.531 12 O -0.530 6.530 13 O -0.344 6.344 14 C 0.078 3.922 15 C -0.092 4.092 16 C 0.029 3.971 17 C -0.545 4.545 18 H 0.062 0.938 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.275 1.275 25 C 0.514 3.486 26 O -0.556 6.556 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.056 0.944 46 H -0.005 1.005 47 H 0.001 0.999 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 32.366 9.530 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.076 3.924 3 C -0.204 4.204 4 C -0.222 4.222 5 N -0.319 5.319 6 C -0.027 4.027 7 C -0.162 4.162 8 C -0.144 4.144 9 C -0.116 4.116 10 H 0.177 0.823 11 C 0.312 3.688 12 O -0.420 6.420 13 O -0.259 6.259 14 C 0.004 3.996 15 C -0.129 4.129 16 C -0.008 4.008 17 C -0.583 4.583 18 H 0.080 0.920 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.200 1.200 25 C 0.300 3.700 26 O -0.435 6.435 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.013 0.987 47 H 0.019 0.981 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.938 31.794 9.120 33.206 hybrid contribution -0.242 -1.474 -0.655 1.631 sum 2.696 30.320 8.465 31.595 Atomic orbital electron populations 1.22179 0.94377 1.02565 1.02610 1.20613 0.94416 0.93475 0.83859 1.22154 1.02185 0.91757 1.04267 1.22222 1.00635 1.01457 0.97934 1.47583 1.48803 1.10975 1.24564 1.21942 0.94320 0.97344 0.89109 1.21940 1.05376 0.92352 0.96491 1.21662 0.94338 0.96882 1.01468 1.21371 1.05230 0.86906 0.98092 0.82304 1.23654 0.82616 0.88547 0.73981 1.90642 1.23031 1.74878 1.53440 1.86618 1.43985 1.27300 1.68008 1.23132 0.98331 0.78848 0.99267 1.21427 0.96548 0.95642 0.99327 1.18918 0.95957 0.90717 0.95243 1.21629 0.99398 0.99519 1.37720 0.92008 1.26023 0.98704 0.98376 0.96745 1.70101 1.25652 1.13758 1.47772 0.85311 0.78893 0.78290 0.78032 1.18604 1.20214 1.19995 1.19532 0.80616 0.82726 0.87078 1.90774 1.38981 1.69710 1.44011 0.91864 0.90514 0.93342 0.90908 0.90067 0.89837 0.93774 0.90495 0.92924 0.90743 0.86877 0.85976 0.89378 0.88660 0.91437 0.92588 0.91251 0.91531 0.92519 0.98669 0.98099 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.22 71.98 0.59 -2.32 16 2 C 0.16 2.64 1.03 3.60 0.00 2.64 16 3 C -0.15 -1.15 7.28 71.98 0.52 -0.63 16 4 C -0.16 -3.53 8.39 71.98 0.60 -2.93 16 5 N -0.59 -10.04 2.79 -779.54 -2.17 -12.21 16 6 C 0.09 0.76 5.24 86.49 0.45 1.21 16 7 C -0.12 -0.79 6.02 30.67 0.18 -0.61 16 8 C -0.11 -1.57 4.77 30.71 0.15 -1.43 16 9 C -0.09 -2.12 2.87 -12.43 -0.04 -2.15 16 10 H 0.16 2.79 8.14 -2.39 -0.02 2.78 16 11 C 0.47 15.65 7.14 71.24 0.51 16.15 16 12 O -0.53 -19.69 15.54 21.97 0.34 -19.35 16 13 O -0.34 -13.45 9.19 -45.69 -0.42 -13.87 16 14 C 0.08 3.28 5.47 71.98 0.39 3.67 16 15 C -0.09 -4.29 5.53 30.60 0.17 -4.12 16 16 C 0.03 1.62 4.97 29.85 0.15 1.77 16 17 C -0.54 -32.53 9.11 25.60 0.23 -32.30 16 18 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 20 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 21 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.51 12.91 6.45 87.71 0.57 13.48 16 26 O -0.56 -19.08 11.18 13.33 0.15 -18.93 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.05 1.28 6.08 -2.39 -0.01 1.27 16 30 H 0.07 0.47 7.60 -2.39 -0.02 0.46 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.36 6.81 -2.39 -0.02 0.35 16 33 H 0.04 1.33 5.98 -2.38 -0.01 1.32 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 0.55 8.07 -2.39 -0.02 0.53 16 37 H 0.11 0.31 5.99 -2.38 -0.01 0.30 16 38 H 0.12 0.14 8.14 -2.39 -0.02 0.13 16 39 H 0.09 0.42 8.13 -2.38 -0.02 0.40 16 40 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.07 1.25 7.72 -2.39 -0.02 1.23 16 42 H 0.06 2.42 8.13 -2.39 -0.02 2.41 16 43 H 0.07 2.84 8.13 -2.39 -0.02 2.82 16 44 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 46 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 47 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 48 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -78.95 377.17 6.08 -72.87 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.92 Total: 9.02 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.95 Total: -7.14 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.89 Total: -70.30 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: 0.07 Total: -52.15 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -78.95 6.08 -72.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885476694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.302 kcal (2) G-P(sol) polarization free energy of solvation -78.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds