Wall clock time and date at job start Fri Apr 10 2020 22:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47283 * 2 1 4 4 C 1.53001 * 109.47046 * 239.99528 * 2 1 3 5 5 O 1.45207 * 109.46834 * 119.99766 * 2 1 3 6 6 C 1.34224 * 116.99944 * 59.99403 * 5 2 1 7 7 O 1.20824 * 120.00368 * 0.02562 * 6 5 2 8 8 C 1.50699 * 119.99889 * 179.97438 * 6 5 2 9 9 H 1.09004 * 110.05477 * 331.99326 * 8 6 5 10 10 C 1.54266 * 110.03481 * 210.57217 * 8 6 5 11 11 C 1.54890 * 104.19550 * 217.10390 * 10 8 6 12 12 C 1.54887 * 102.74929 * 37.94744 * 11 10 8 13 13 C 1.53880 * 110.03209 * 93.40864 * 8 6 5 14 14 H 1.09001 * 110.07337 * 238.59641 * 13 8 6 15 15 N 1.46501 * 110.02716 * 359.97438 * 13 8 6 16 16 C 1.34784 * 119.99881 * 233.43440 * 15 13 8 17 17 O 1.21281 * 119.99952 * 0.02562 * 16 15 13 18 18 C 1.50692 * 119.99823 * 179.73139 * 16 15 13 19 19 C 1.53002 * 109.47167 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47435 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99744 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00059 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99747 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00039 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46960 * 90.00087 * 24 22 20 26 26 H 1.48494 * 109.46827 * 209.99993 * 24 22 20 27 27 H 1.48493 * 109.47123 * 330.00308 * 24 22 20 28 28 H 1.09001 * 109.46867 * 300.00601 * 1 2 3 29 29 H 1.08998 * 109.46887 * 60.00259 * 1 2 3 30 30 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46834 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46275 * 299.99366 * 3 2 1 33 33 H 1.08998 * 109.47171 * 59.99747 * 3 2 1 34 34 H 1.09008 * 109.46976 * 300.00246 * 4 2 1 35 35 H 1.08996 * 109.47283 * 59.99828 * 4 2 1 36 36 H 1.08992 * 109.46860 * 180.02562 * 4 2 1 37 37 H 1.09007 * 110.48461 * 98.42741 * 10 8 6 38 38 H 1.08993 * 110.59977 * 335.84250 * 10 8 6 39 39 H 1.08994 * 110.76058 * 279.62797 * 11 10 8 40 40 H 1.09001 * 110.90955 * 156.33355 * 11 10 8 41 41 H 1.08997 * 110.48754 * 203.37487 * 12 11 10 42 42 H 1.08994 * 110.48907 * 80.72904 * 12 11 10 43 43 H 0.96992 * 119.99903 * 53.43894 * 15 13 8 44 44 H 1.09006 * 109.47027 * 299.99638 * 18 16 15 45 45 H 1.08996 * 109.47337 * 59.99799 * 18 16 15 46 46 H 1.09006 * 109.46585 * 299.99583 * 19 18 16 47 47 H 1.08996 * 109.47422 * 59.99525 * 19 18 16 48 48 H 0.96995 * 119.99748 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1857 6 6 1.6532 -1.9683 1.3381 7 8 0.9565 -2.5027 0.5081 8 6 2.1180 -2.7436 2.5438 9 1 3.0674 -2.3448 2.9014 10 6 2.2732 -4.2359 2.1850 11 6 1.7991 -4.9834 3.4560 12 6 0.6104 -4.1160 3.9393 13 6 1.0607 -2.6674 3.6592 14 1 1.4961 -2.2313 4.5583 15 7 -0.0805 -1.8635 3.2147 16 6 -0.5047 -0.8246 3.9614 17 8 0.0587 -0.5551 5.0010 18 6 -1.6748 0.0059 3.5011 19 6 -1.9479 1.1122 4.5221 20 6 -3.1184 1.9425 4.0622 21 1 -3.6173 1.7051 3.1341 22 6 -3.5524 3.0051 4.8260 23 7 -4.5736 3.7300 4.4243 24 14 -2.6899 3.4152 6.4315 25 1 -1.5872 4.3748 6.1699 26 1 -3.6624 4.0237 7.3743 27 1 -2.1345 2.1731 7.0263 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7491 -1.2491 35 1 1.6767 -0.2077 -2.1392 36 1 3.1299 -0.7217 -1.2489 37 1 3.3161 -4.4704 1.9712 38 1 1.6431 -4.4931 1.3337 39 1 2.5890 -5.0089 4.2066 40 1 1.4670 -5.9927 3.2126 41 1 0.4396 -4.2630 5.0057 42 1 -0.2897 -4.3521 3.3717 43 1 -0.5308 -2.0789 2.3831 44 1 -1.4447 0.4533 2.5340 45 1 -2.5562 -0.6284 3.4075 46 1 -2.1778 0.6652 5.4893 47 1 -1.0664 1.7465 4.6153 48 1 -4.8792 4.4773 4.9619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890596743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:47 Heat of formation + Delta-G solvation = -148.867238 kcal Electronic energy + Delta-G solvation = -27842.050175 eV Core-core repulsion = 24089.133697 eV Total energy + Delta-G solvation = -3752.916478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31583 -39.53169 -38.09076 -36.58664 -34.13771 -33.55003 -33.48119 -31.28463 -29.75300 -28.14025 -27.51716 -27.42563 -25.78416 -23.54115 -21.59688 -21.03659 -20.52120 -19.81986 -19.31802 -17.49519 -17.41306 -16.71894 -16.38671 -15.80589 -15.54936 -15.33641 -14.94813 -14.44271 -14.31135 -14.07544 -13.92397 -13.69391 -13.23762 -12.88017 -12.67352 -12.56587 -12.45240 -12.25515 -12.05098 -11.96637 -11.92389 -11.81025 -11.50709 -11.38764 -11.33597 -11.30200 -11.04325 -10.93137 -10.92326 -10.44615 -10.16460 -10.02622 -10.00687 -9.77648 -9.25524 -9.16759 -8.97270 -8.50354 -6.02702 -4.01364 2.09855 2.56597 3.06225 3.37746 3.38684 3.44618 3.55462 4.17449 4.26087 4.49261 4.51159 4.62531 4.68066 4.82220 4.87319 5.07157 5.10367 5.15722 5.20837 5.32771 5.33629 5.37053 5.45765 5.49161 5.56618 5.58477 5.66352 5.70670 5.74497 5.80125 5.88968 5.92858 5.94325 6.03394 6.05795 6.08504 6.14081 6.31515 6.48892 6.59300 6.70109 7.36215 7.43270 7.70326 7.74475 7.79274 8.49825 8.61890 9.00319 9.60394 11.10151 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.004443 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.523815 B = 6299.879014 C = 7744.285332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.117 3.883 3 C -0.143 4.143 4 C -0.181 4.181 5 O -0.344 6.344 6 C 0.483 3.517 7 O -0.508 6.508 8 C -0.104 4.104 9 H 0.108 0.892 10 C -0.115 4.115 11 C -0.120 4.120 12 C -0.134 4.134 13 C 0.149 3.851 14 H 0.115 0.885 15 N -0.742 5.742 16 C 0.515 3.485 17 O -0.537 6.537 18 C -0.124 4.124 19 C 0.003 3.997 20 C -0.524 4.524 21 H 0.072 0.928 22 C 0.070 3.930 23 N -0.904 5.904 24 Si 0.876 3.124 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.261 1.261 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.400 0.600 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.023 0.977 47 H 0.019 0.981 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.383 -15.805 -9.214 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.082 3.918 3 C -0.200 4.200 4 C -0.238 4.238 5 O -0.261 6.261 6 C 0.327 3.673 7 O -0.397 6.397 8 C -0.124 4.124 9 H 0.126 0.874 10 C -0.152 4.152 11 C -0.158 4.158 12 C -0.172 4.172 13 C 0.043 3.957 14 H 0.133 0.867 15 N -0.396 5.396 16 C 0.304 3.696 17 O -0.413 6.413 18 C -0.163 4.163 19 C -0.035 4.035 20 C -0.562 4.562 21 H 0.090 0.910 22 C -0.131 4.131 23 N -0.542 5.542 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.185 1.185 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.236 0.764 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.042 0.958 47 H 0.037 0.963 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.456 -15.534 -8.671 24.234 hybrid contribution 0.116 0.331 0.227 0.417 sum 16.572 -15.203 -8.444 24.022 Atomic orbital electron populations 1.22567 0.93546 1.04581 1.03717 1.22216 0.94805 0.92270 0.82554 1.21869 1.01803 0.92698 1.03645 1.22481 1.01324 1.03057 0.96920 1.86596 1.69233 1.25115 1.45141 1.23182 0.77039 0.80712 0.86385 1.90550 1.35679 1.70181 1.43303 1.22234 1.01805 0.96027 0.92359 0.87409 1.22443 1.02432 0.90763 0.99607 1.22436 0.97825 0.98774 0.96767 1.22789 0.98847 0.93369 1.02241 1.21539 0.85787 0.92039 0.96356 0.86744 1.46438 1.33892 1.32482 1.26809 1.21554 0.85174 0.79405 0.83463 1.90637 1.57554 1.69133 1.23929 1.21719 0.94208 0.98115 1.02307 1.19359 0.97126 0.92799 0.94199 1.21101 1.13752 1.12633 1.08716 0.90965 1.24959 0.94656 0.95744 0.97782 1.69913 1.26075 1.19351 1.38900 0.86808 0.79486 0.79336 0.84012 1.20236 1.21443 1.18539 0.91037 0.90886 0.90003 0.91779 0.90270 0.90915 0.89897 0.91035 0.92326 0.90805 0.89338 0.90921 0.90688 0.90470 0.90574 0.76414 0.89734 0.89609 0.95830 0.96264 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 8.37 37.16 0.31 -2.02 16 2 C 0.12 1.39 1.13 -90.62 -0.10 1.28 16 3 C -0.14 -1.52 8.85 37.16 0.33 -1.19 16 4 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 5 O -0.34 -4.56 9.89 -39.24 -0.39 -4.95 16 6 C 0.48 5.93 4.66 36.01 0.17 6.09 16 7 O -0.51 -6.58 10.64 -18.75 -0.20 -6.77 16 8 C -0.10 -1.06 3.40 -90.65 -0.31 -1.37 16 9 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 10 C -0.11 -0.93 6.31 -25.07 -0.16 -1.09 16 11 C -0.12 -0.87 6.91 -24.74 -0.17 -1.04 16 12 C -0.13 -1.28 6.53 -25.07 -0.16 -1.44 16 13 C 0.15 1.77 3.57 -66.81 -0.24 1.53 16 14 H 0.11 1.54 6.96 -51.93 -0.36 1.18 16 15 N -0.74 -10.51 3.87 -52.72 -0.20 -10.72 16 16 C 0.52 9.50 7.83 -10.99 -0.09 9.42 16 17 O -0.54 -11.74 15.34 5.56 0.09 -11.65 16 18 C -0.12 -2.46 5.64 -27.89 -0.16 -2.62 16 19 C 0.00 0.08 3.33 -27.88 -0.09 -0.02 16 20 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 21 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 23 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 24 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 28 H 0.07 1.01 6.52 -51.93 -0.34 0.67 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.07 5.89 -51.93 -0.31 0.76 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.95 5.89 -51.92 -0.31 0.64 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 38 H 0.09 0.82 6.89 -51.93 -0.36 0.46 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 43 H 0.40 5.29 7.47 -40.82 -0.30 4.99 16 44 H 0.08 1.58 6.52 -51.93 -0.34 1.24 16 45 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 47 H 0.02 0.50 7.53 -51.93 -0.39 0.10 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -33.57 374.81 -7.89 -41.46 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.15 Total: 3.67 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.79 Total: -7.39 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.57 Total: -37.97 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.50 Total: -23.38 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.57 -7.89 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890596743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.407 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds