Wall clock time and date at job start Fri Apr 10 2020 22:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47283 * 2 1 4 4 C 1.53001 * 109.47046 * 239.99528 * 2 1 3 5 5 O 1.45207 * 109.46834 * 119.99766 * 2 1 3 6 6 C 1.34224 * 116.99944 * 59.99403 * 5 2 1 7 7 O 1.20824 * 120.00368 * 0.02562 * 6 5 2 8 8 C 1.50699 * 119.99889 * 179.97438 * 6 5 2 9 9 H 1.09004 * 110.05477 * 331.99326 * 8 6 5 10 10 C 1.54266 * 110.03481 * 210.57217 * 8 6 5 11 11 C 1.54890 * 104.19550 * 217.10390 * 10 8 6 12 12 C 1.54887 * 102.74929 * 37.94744 * 11 10 8 13 13 C 1.53880 * 110.03209 * 93.40864 * 8 6 5 14 14 H 1.09001 * 110.07337 * 238.59641 * 13 8 6 15 15 N 1.46501 * 110.02716 * 359.97438 * 13 8 6 16 16 C 1.34784 * 119.99881 * 233.43440 * 15 13 8 17 17 O 1.21281 * 119.99952 * 0.02562 * 16 15 13 18 18 C 1.50692 * 119.99823 * 179.73139 * 16 15 13 19 19 C 1.53002 * 109.47167 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47435 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99744 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00059 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99747 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00039 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46960 * 90.00087 * 24 22 20 26 26 H 1.48494 * 109.46827 * 209.99993 * 24 22 20 27 27 H 1.48493 * 109.47123 * 330.00308 * 24 22 20 28 28 H 1.09001 * 109.46867 * 300.00601 * 1 2 3 29 29 H 1.08998 * 109.46887 * 60.00259 * 1 2 3 30 30 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46834 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46275 * 299.99366 * 3 2 1 33 33 H 1.08998 * 109.47171 * 59.99747 * 3 2 1 34 34 H 1.09008 * 109.46976 * 300.00246 * 4 2 1 35 35 H 1.08996 * 109.47283 * 59.99828 * 4 2 1 36 36 H 1.08992 * 109.46860 * 180.02562 * 4 2 1 37 37 H 1.09007 * 110.48461 * 98.42741 * 10 8 6 38 38 H 1.08993 * 110.59977 * 335.84250 * 10 8 6 39 39 H 1.08994 * 110.76058 * 279.62797 * 11 10 8 40 40 H 1.09001 * 110.90955 * 156.33355 * 11 10 8 41 41 H 1.08997 * 110.48754 * 203.37487 * 12 11 10 42 42 H 1.08994 * 110.48907 * 80.72904 * 12 11 10 43 43 H 0.96992 * 119.99903 * 53.43894 * 15 13 8 44 44 H 1.09006 * 109.47027 * 299.99638 * 18 16 15 45 45 H 1.08996 * 109.47337 * 59.99799 * 18 16 15 46 46 H 1.09006 * 109.46585 * 299.99583 * 19 18 16 47 47 H 1.08996 * 109.47422 * 59.99525 * 19 18 16 48 48 H 0.96995 * 119.99748 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1857 6 6 1.6532 -1.9683 1.3381 7 8 0.9565 -2.5027 0.5081 8 6 2.1180 -2.7436 2.5438 9 1 3.0674 -2.3448 2.9014 10 6 2.2732 -4.2359 2.1850 11 6 1.7991 -4.9834 3.4560 12 6 0.6104 -4.1160 3.9393 13 6 1.0607 -2.6674 3.6592 14 1 1.4961 -2.2313 4.5583 15 7 -0.0805 -1.8635 3.2147 16 6 -0.5047 -0.8246 3.9614 17 8 0.0587 -0.5551 5.0010 18 6 -1.6748 0.0059 3.5011 19 6 -1.9479 1.1122 4.5221 20 6 -3.1184 1.9425 4.0622 21 1 -3.6173 1.7051 3.1341 22 6 -3.5524 3.0051 4.8260 23 7 -4.5736 3.7300 4.4243 24 14 -2.6899 3.4152 6.4315 25 1 -1.5872 4.3748 6.1699 26 1 -3.6624 4.0237 7.3743 27 1 -2.1345 2.1731 7.0263 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7491 -1.2491 35 1 1.6767 -0.2077 -2.1392 36 1 3.1299 -0.7217 -1.2489 37 1 3.3161 -4.4704 1.9712 38 1 1.6431 -4.4931 1.3337 39 1 2.5890 -5.0089 4.2066 40 1 1.4670 -5.9927 3.2126 41 1 0.4396 -4.2630 5.0057 42 1 -0.2897 -4.3521 3.3717 43 1 -0.5308 -2.0789 2.3831 44 1 -1.4447 0.4533 2.5340 45 1 -2.5562 -0.6284 3.4075 46 1 -2.1778 0.6652 5.4893 47 1 -1.0664 1.7465 4.6153 48 1 -4.8792 4.4773 4.9619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890596743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:46 Heat of formation + Delta-G solvation = -168.715100 kcal Electronic energy + Delta-G solvation = -27842.910843 eV Core-core repulsion = 24089.133697 eV Total energy + Delta-G solvation = -3753.777145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28736 -40.81032 -39.15966 -37.54404 -35.58430 -35.06362 -34.76380 -33.30748 -30.53821 -29.34467 -28.39298 -28.33004 -27.48337 -24.49001 -23.35948 -21.84943 -21.39112 -21.38019 -20.29238 -19.29408 -18.47132 -17.99147 -17.65701 -16.97292 -16.63345 -16.42164 -16.31208 -16.09005 -15.50093 -15.29034 -14.80954 -14.73411 -14.64653 -14.51365 -14.36186 -13.56357 -13.47227 -13.30530 -13.25496 -12.95911 -12.92278 -12.87983 -12.84102 -12.58284 -12.37502 -12.18875 -12.14412 -12.02878 -11.99127 -11.85102 -11.77842 -11.56191 -11.43159 -11.36373 -10.98254 -10.79304 -10.78789 -10.19251 -8.32525 -6.35796 1.14275 1.32504 1.34326 1.49391 1.58240 1.67581 2.14791 2.34121 3.03082 3.38796 3.44339 3.64158 3.74068 3.78578 3.89626 3.93992 4.12113 4.25432 4.29077 4.35150 4.38514 4.41812 4.46869 4.57739 4.59739 4.69812 4.74436 4.77810 4.85114 4.88405 4.90964 4.97580 5.03869 5.10031 5.16771 5.18540 5.23111 5.26745 5.31514 5.39719 5.40880 5.47789 5.57630 5.58870 6.21465 6.39504 6.69741 6.79470 7.17780 7.29542 8.83246 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.004443 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.523815 B = 6299.879014 C = 7744.285332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.109 3.891 3 C -0.142 4.142 4 C -0.173 4.173 5 O -0.360 6.360 6 C 0.478 3.522 7 O -0.517 6.517 8 C -0.101 4.101 9 H 0.120 0.880 10 C -0.108 4.108 11 C -0.110 4.110 12 C -0.132 4.132 13 C 0.141 3.859 14 H 0.099 0.901 15 N -0.724 5.724 16 C 0.522 3.478 17 O -0.574 6.574 18 C -0.120 4.120 19 C 0.010 3.990 20 C -0.530 4.530 21 H 0.048 0.952 22 C 0.016 3.984 23 N -0.943 5.943 24 Si 0.937 3.063 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.261 1.261 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.407 0.593 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.012 0.988 47 H 0.009 0.991 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.252 -17.344 -9.497 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.073 3.927 3 C -0.199 4.199 4 C -0.230 4.230 5 O -0.277 6.277 6 C 0.322 3.678 7 O -0.406 6.406 8 C -0.122 4.122 9 H 0.138 0.862 10 C -0.145 4.145 11 C -0.147 4.147 12 C -0.170 4.170 13 C 0.037 3.963 14 H 0.117 0.883 15 N -0.377 5.377 16 C 0.310 3.690 17 O -0.453 6.453 18 C -0.159 4.159 19 C -0.028 4.028 20 C -0.567 4.567 21 H 0.066 0.934 22 C -0.181 4.181 23 N -0.583 5.583 24 Si 0.762 3.238 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.185 1.185 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.243 0.757 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.030 0.970 47 H 0.028 0.972 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.334 -17.113 -8.990 26.642 hybrid contribution -0.502 0.789 0.211 0.959 sum 17.832 -16.323 -8.779 25.720 Atomic orbital electron populations 1.22541 0.94449 1.03925 1.03275 1.22410 0.94218 0.93063 0.82984 1.21893 1.02507 0.91930 1.03537 1.22409 1.01821 1.02183 0.96579 1.86599 1.69492 1.25682 1.45908 1.23573 0.76875 0.80504 0.86850 1.90547 1.36016 1.70243 1.43781 1.22328 1.01453 0.97478 0.90908 0.86168 1.22443 1.03652 0.88867 0.99565 1.22434 0.96992 0.98829 0.96495 1.22773 0.99892 0.91979 1.02354 1.21792 0.85227 0.92868 0.96442 0.88277 1.46247 1.34079 1.31236 1.26167 1.21103 0.84583 0.80078 0.83215 1.90623 1.58703 1.70439 1.25553 1.21548 0.95824 0.97366 1.01212 1.19184 0.95080 0.93633 0.94948 1.21380 1.14497 1.13068 1.07803 0.93418 1.25777 0.95347 0.95786 1.01225 1.70023 1.27587 1.20176 1.40527 0.85842 0.78740 0.79164 0.80076 1.19289 1.20235 1.18525 0.93265 0.89496 0.90687 0.90691 0.88443 0.92955 0.91122 0.89438 0.91431 0.88635 0.90328 0.89459 0.89062 0.90473 0.90812 0.75679 0.88781 0.88369 0.96978 0.97248 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.56 8.37 71.98 0.60 -3.96 16 2 C 0.11 2.47 1.13 -10.79 -0.01 2.46 16 3 C -0.14 -2.87 8.85 71.98 0.64 -2.23 16 4 C -0.17 -3.23 8.37 71.98 0.60 -2.62 16 5 O -0.36 -9.26 9.89 -51.36 -0.51 -9.77 16 6 C 0.48 11.17 4.66 71.24 0.33 11.50 16 7 O -0.52 -12.80 10.64 21.97 0.23 -12.56 16 8 C -0.10 -1.90 3.40 -10.81 -0.04 -1.94 16 9 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 10 C -0.11 -1.44 6.31 31.67 0.20 -1.24 16 11 C -0.11 -1.25 6.91 31.88 0.22 -1.03 16 12 C -0.13 -2.27 6.53 31.67 0.21 -2.06 16 13 C 0.14 3.20 3.57 45.72 0.16 3.37 16 14 H 0.10 2.62 6.96 -2.39 -0.02 2.60 16 15 N -0.72 -20.16 3.87 -439.09 -1.70 -21.86 16 16 C 0.52 19.26 7.83 87.65 0.69 19.95 16 17 O -0.57 -25.26 15.34 -3.03 -0.05 -25.31 16 18 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 19 C 0.01 0.48 3.33 29.85 0.10 0.58 16 20 C -0.53 -30.98 9.66 25.60 0.25 -30.73 16 21 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 22 C 0.02 0.99 5.47 84.65 0.46 1.45 16 23 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 24 Si 0.94 46.95 27.47 68.60 1.88 48.83 16 25 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 27 H -0.26 -12.99 6.54 99.48 0.65 -12.33 16 28 H 0.05 1.41 6.52 -2.39 -0.02 1.40 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.93 5.89 -2.39 -0.01 1.92 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.51 5.89 -2.38 -0.01 1.50 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.08 1.26 6.89 -2.39 -0.02 1.24 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 43 H 0.41 10.49 7.47 -92.71 -0.69 9.80 16 44 H 0.09 3.57 6.52 -2.38 -0.02 3.56 16 45 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 46 H 0.01 0.63 7.16 -2.38 -0.02 0.61 16 47 H 0.01 0.48 7.53 -2.39 -0.02 0.46 16 48 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -72.92 374.81 4.94 -67.98 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.20 Total: 22.82 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.58 Total: -11.13 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.40 Total: -80.86 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.32 Total: -47.64 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.88 Total: 48.83 kcal Total: -72.92 4.94 -67.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890596743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.736 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds