Wall clock time and date at job start Fri Apr 10 2020 22:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42890 * 114.00114 * 2 1 4 4 C 1.53007 * 109.47308 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.46694 * 64.99852 * 4 3 2 6 6 C 1.35784 * 116.99719 * 180.02562 * 5 4 3 7 7 C 1.35126 * 125.83838 * 180.02562 * 6 5 4 8 8 C 1.41458 * 106.78778 * 179.97438 * 7 6 5 9 9 C 1.34443 * 106.89280 * 359.97438 * 8 7 6 10 10 C 1.50701 * 125.73398 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46650 * 95.74963 * 10 9 8 12 12 C 1.46902 * 110.99525 * 163.90820 * 11 10 9 13 13 C 1.50707 * 109.47093 * 202.85715 * 12 11 10 14 14 H 1.07998 * 119.99567 * 0.84186 * 13 12 11 15 15 C 1.37875 * 119.99974 * 180.84279 * 13 12 11 16 16 N 1.31517 * 120.00067 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99754 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47164 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47074 * 119.99864 * 17 15 13 20 20 H 1.48500 * 109.46872 * 239.99908 * 17 15 13 21 21 C 1.46896 * 111.00487 * 287.86260 * 11 10 9 22 22 C 1.52998 * 109.47149 * 158.65984 * 21 11 10 23 23 C 1.53002 * 109.46946 * 177.84698 * 22 21 11 24 24 C 1.52997 * 109.47149 * 297.84592 * 22 21 11 25 25 O 1.34322 * 125.83969 * 0.31072 * 6 5 4 26 26 H 1.09002 * 109.46786 * 59.99701 * 1 2 3 27 27 H 1.08997 * 109.47451 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47031 * 299.99965 * 1 2 3 29 29 H 1.09002 * 109.47457 * 60.00443 * 3 2 1 30 30 H 1.08999 * 109.47347 * 300.00193 * 3 2 1 31 31 H 1.09003 * 109.47070 * 305.00301 * 4 3 2 32 32 H 1.09002 * 109.47380 * 185.00259 * 4 3 2 33 33 H 1.07998 * 126.60668 * 359.96090 * 7 6 5 34 34 H 1.07989 * 126.54896 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47396 * 335.75524 * 10 9 8 36 36 H 1.08992 * 109.47260 * 215.74848 * 10 9 8 37 37 H 1.08993 * 109.47487 * 322.85798 * 12 11 10 38 38 H 1.09000 * 109.47037 * 82.86279 * 12 11 10 39 39 H 0.97003 * 119.99524 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47244 * 278.66303 * 21 11 10 41 41 H 1.08998 * 109.46644 * 38.65863 * 21 11 10 42 42 H 1.09001 * 109.47119 * 57.84868 * 22 21 11 43 43 H 1.09001 * 109.47073 * 60.00141 * 23 22 21 44 44 H 1.08994 * 109.47193 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.47246 * 299.99954 * 23 22 21 46 46 H 1.08992 * 109.47180 * 63.11389 * 24 22 21 47 47 H 1.09004 * 109.47012 * 183.10995 * 24 22 21 48 48 H 1.09000 * 109.47367 * 303.10693 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5795 -1.2220 6 6 5.3007 0.3978 -1.3836 7 6 5.8994 -0.1534 -2.4623 8 6 7.2907 -0.1441 -2.2067 9 6 7.4613 0.4098 -0.9936 10 6 8.7832 0.6273 -0.3034 11 7 9.2460 1.9990 -0.5531 12 6 10.3088 2.3755 0.3886 13 6 10.3709 3.8770 0.5018 14 1 9.6801 4.4897 -0.0583 15 6 11.3095 4.4684 1.3204 16 7 12.1504 3.7222 2.0029 17 14 11.3860 6.3295 1.4612 18 1 10.3391 6.9346 0.5992 19 1 11.1571 6.7289 2.8731 20 1 12.7229 6.8046 1.0229 21 6 9.6933 2.1590 -1.9431 22 6 9.6585 3.6407 -2.3227 23 6 10.1752 3.8132 -3.7525 24 6 8.2207 4.1562 -2.2344 25 8 6.2527 0.7304 -0.4963 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8515 0.5681 0.8409 32 1 3.9786 2.1764 0.0890 33 1 5.4100 -0.5290 -3.3487 34 1 8.0672 -0.5109 -2.8613 35 1 9.5164 -0.0798 -0.6915 36 1 8.6628 0.4740 0.7689 37 1 10.0959 1.9459 1.3674 38 1 11.2653 1.9986 0.0265 39 1 12.8105 4.1383 2.5791 40 1 10.7112 1.7822 -2.0429 41 1 9.0321 1.5989 -2.6043 42 1 10.2900 4.2063 -1.6375 43 1 9.5437 3.2476 -4.4377 44 1 10.1508 4.8688 -4.0228 45 1 11.1996 3.4459 -3.8154 46 1 7.8716 4.0845 -1.2044 47 1 8.1872 5.1966 -2.5578 48 1 7.5789 3.5548 -2.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891464178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:49 Heat of formation + Delta-G solvation = -68.527480 kcal Electronic energy + Delta-G solvation = -26624.512515 eV Core-core repulsion = 22875.079830 eV Total energy + Delta-G solvation = -3749.432684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.36384 -38.90338 -37.70553 -37.36331 -33.87488 -32.93596 -32.51245 -31.04022 -29.38272 -27.00193 -26.65237 -26.43639 -25.69790 -23.68040 -22.99376 -21.55468 -21.03498 -20.07464 -19.06260 -18.55147 -17.22989 -16.53709 -16.34950 -15.98819 -15.74844 -15.17073 -15.03165 -14.59116 -14.43721 -14.05074 -13.84945 -13.50575 -13.14323 -13.11292 -12.73682 -12.58195 -12.42589 -12.25739 -12.13168 -11.89277 -11.74337 -11.69732 -11.34901 -11.20328 -11.11866 -11.04107 -10.61451 -10.55165 -10.21997 -10.16016 -10.04981 -9.94440 -9.55741 -9.41479 -9.04494 -8.39380 -7.66500 -7.29423 -6.02379 -4.01256 2.06988 2.60212 2.89661 3.30419 3.36645 3.38606 3.40084 3.43239 4.42538 4.59323 4.79443 4.93701 4.94983 5.01130 5.06522 5.16074 5.21720 5.26675 5.32378 5.35672 5.37958 5.64082 5.66914 5.75169 5.82976 5.95821 6.02917 6.10411 6.13791 6.24609 6.29340 6.34823 6.46632 6.56863 6.70320 6.73706 6.77288 6.81677 7.03861 7.16485 7.20348 7.29115 7.41483 7.54961 7.85903 8.09012 8.18504 8.51553 9.05825 9.61025 11.08064 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.003258 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.150301 B = 8593.228184 C = 9266.010319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.064 3.936 4 C 0.057 3.943 5 O -0.263 6.263 6 C 0.171 3.829 7 C -0.231 4.231 8 C -0.192 4.192 9 C 0.017 3.983 10 C 0.129 3.871 11 N -0.531 5.531 12 C 0.192 3.808 13 C -0.501 4.501 14 H 0.077 0.923 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.892 3.108 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.286 1.286 21 C 0.072 3.928 22 C -0.106 4.106 23 C -0.143 4.143 24 C -0.126 4.126 25 O -0.193 6.193 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.027 0.973 38 H -0.002 1.002 39 H 0.260 0.740 40 H 0.025 0.975 41 H 0.054 0.946 42 H 0.112 0.888 43 H 0.042 0.958 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.034 0.966 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 -6.141 -6.751 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.013 4.013 4 C -0.018 4.018 5 O -0.178 6.178 6 C 0.078 3.922 7 C -0.251 4.251 8 C -0.212 4.212 9 C -0.033 4.033 10 C 0.001 3.999 11 N -0.256 5.256 12 C 0.068 3.932 13 C -0.539 4.539 14 H 0.095 0.905 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.720 3.280 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.056 4.056 22 C -0.124 4.124 23 C -0.201 4.201 24 C -0.184 4.184 25 O -0.093 6.093 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.015 0.985 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.121 -5.889 -6.377 19.196 hybrid contribution 0.539 0.731 0.078 0.912 sum -16.583 -5.158 -6.298 18.473 Atomic orbital electron populations 1.22759 0.80825 1.02969 0.99997 1.87972 1.19842 1.27191 1.95433 1.22588 0.91297 0.85718 1.01692 1.22839 0.93707 0.99215 0.86076 1.86466 1.13572 1.78470 1.39264 1.20262 0.80288 1.01563 0.90133 1.20646 0.93087 1.11764 0.99581 1.21289 0.95668 1.07076 0.97163 1.22301 0.83824 1.01995 0.95140 1.20513 0.86865 0.92620 0.99880 1.62050 1.40826 1.18571 1.04113 1.19858 0.86388 0.96945 0.90027 1.21377 1.15914 0.91247 1.25361 0.90541 1.24998 0.95821 0.98127 0.95789 1.69968 1.20009 1.34963 1.28990 0.86531 0.77841 0.85792 0.77869 1.19522 1.21135 1.21179 1.22044 0.97094 0.96768 0.89671 1.21430 0.98115 0.96880 0.96001 1.21828 1.00258 1.00597 0.97435 1.21602 0.96270 0.98189 1.02317 1.83952 1.15561 1.67008 1.42747 0.93922 0.89485 0.94011 0.90738 0.91888 0.90626 0.89588 0.83466 0.83467 0.92254 0.89601 0.95530 0.98459 0.93069 0.95646 0.92721 0.87048 0.93914 0.93359 0.93366 0.91314 0.94725 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.25 10.67 -40.09 -0.43 -4.68 16 3 C 0.06 0.59 6.32 37.16 0.23 0.83 16 4 C 0.06 0.66 6.07 37.16 0.23 0.89 16 5 O -0.26 -3.84 10.17 -45.76 -0.47 -4.31 16 6 C 0.17 2.75 7.87 29.63 0.23 2.98 16 7 C -0.23 -3.48 10.94 -39.46 -0.43 -3.91 16 8 C -0.19 -2.93 9.50 -39.70 -0.38 -3.30 16 9 C 0.02 0.29 6.32 -35.65 -0.23 0.06 16 10 C 0.13 2.30 5.49 -4.97 -0.03 2.27 16 11 N -0.53 -10.97 3.74 -237.52 -0.89 -11.86 16 12 C 0.19 4.75 4.79 -4.97 -0.02 4.73 16 13 C -0.50 -13.31 7.33 -34.44 -0.25 -13.56 16 14 H 0.08 2.01 5.12 -52.49 -0.27 1.74 16 15 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 16 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.07 1.37 4.25 -3.83 -0.02 1.35 16 22 C -0.11 -2.00 2.44 -90.62 -0.22 -2.22 16 23 C -0.14 -2.27 9.19 37.16 0.34 -1.93 16 24 C -0.13 -2.32 8.61 37.16 0.32 -2.00 16 25 O -0.19 -3.37 10.16 -18.21 -0.18 -3.56 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.15 1.94 8.04 -52.49 -0.42 1.52 16 35 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.09 1.54 7.65 -51.93 -0.40 1.14 16 37 H 0.03 0.70 7.58 -51.93 -0.39 0.31 16 38 H 0.00 -0.06 7.65 -51.93 -0.40 -0.46 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.03 0.50 7.66 -51.93 -0.40 0.10 16 41 H 0.05 0.95 6.10 -51.93 -0.32 0.63 16 42 H 0.11 2.48 4.95 -51.93 -0.26 2.22 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.41 7.20 -51.93 -0.37 1.04 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -30.37 388.56 -7.87 -38.24 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.27 Total: 0.51 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 0.80 Total: -11.10 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.15 Total: -37.15 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.08 Total: -12.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.37 -7.87 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.285 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds