Wall clock time and date at job start Fri Apr 10 2020 22:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42890 * 114.00114 * 2 1 4 4 C 1.53007 * 109.47308 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.46694 * 64.99852 * 4 3 2 6 6 C 1.35784 * 116.99719 * 180.02562 * 5 4 3 7 7 C 1.35126 * 125.83838 * 180.02562 * 6 5 4 8 8 C 1.41458 * 106.78778 * 179.97438 * 7 6 5 9 9 C 1.34443 * 106.89280 * 359.97438 * 8 7 6 10 10 C 1.50701 * 125.73398 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46650 * 95.74963 * 10 9 8 12 12 C 1.46902 * 110.99525 * 163.90820 * 11 10 9 13 13 C 1.50707 * 109.47093 * 202.85715 * 12 11 10 14 14 H 1.07998 * 119.99567 * 0.84186 * 13 12 11 15 15 C 1.37875 * 119.99974 * 180.84279 * 13 12 11 16 16 N 1.31517 * 120.00067 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99754 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47164 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47074 * 119.99864 * 17 15 13 20 20 H 1.48500 * 109.46872 * 239.99908 * 17 15 13 21 21 C 1.46896 * 111.00487 * 287.86260 * 11 10 9 22 22 C 1.52998 * 109.47149 * 158.65984 * 21 11 10 23 23 C 1.53002 * 109.46946 * 177.84698 * 22 21 11 24 24 C 1.52997 * 109.47149 * 297.84592 * 22 21 11 25 25 O 1.34322 * 125.83969 * 0.31072 * 6 5 4 26 26 H 1.09002 * 109.46786 * 59.99701 * 1 2 3 27 27 H 1.08997 * 109.47451 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47031 * 299.99965 * 1 2 3 29 29 H 1.09002 * 109.47457 * 60.00443 * 3 2 1 30 30 H 1.08999 * 109.47347 * 300.00193 * 3 2 1 31 31 H 1.09003 * 109.47070 * 305.00301 * 4 3 2 32 32 H 1.09002 * 109.47380 * 185.00259 * 4 3 2 33 33 H 1.07998 * 126.60668 * 359.96090 * 7 6 5 34 34 H 1.07989 * 126.54896 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47396 * 335.75524 * 10 9 8 36 36 H 1.08992 * 109.47260 * 215.74848 * 10 9 8 37 37 H 1.08993 * 109.47487 * 322.85798 * 12 11 10 38 38 H 1.09000 * 109.47037 * 82.86279 * 12 11 10 39 39 H 0.97003 * 119.99524 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47244 * 278.66303 * 21 11 10 41 41 H 1.08998 * 109.46644 * 38.65863 * 21 11 10 42 42 H 1.09001 * 109.47119 * 57.84868 * 22 21 11 43 43 H 1.09001 * 109.47073 * 60.00141 * 23 22 21 44 44 H 1.08994 * 109.47193 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.47246 * 299.99954 * 23 22 21 46 46 H 1.08992 * 109.47180 * 63.11389 * 24 22 21 47 47 H 1.09004 * 109.47012 * 183.10995 * 24 22 21 48 48 H 1.09000 * 109.47367 * 303.10693 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5795 -1.2220 6 6 5.3007 0.3978 -1.3836 7 6 5.8994 -0.1534 -2.4623 8 6 7.2907 -0.1441 -2.2067 9 6 7.4613 0.4098 -0.9936 10 6 8.7832 0.6273 -0.3034 11 7 9.2460 1.9990 -0.5531 12 6 10.3088 2.3755 0.3886 13 6 10.3709 3.8770 0.5018 14 1 9.6801 4.4897 -0.0583 15 6 11.3095 4.4684 1.3204 16 7 12.1504 3.7222 2.0029 17 14 11.3860 6.3295 1.4612 18 1 10.3391 6.9346 0.5992 19 1 11.1571 6.7289 2.8731 20 1 12.7229 6.8046 1.0229 21 6 9.6933 2.1590 -1.9431 22 6 9.6585 3.6407 -2.3227 23 6 10.1752 3.8132 -3.7525 24 6 8.2207 4.1562 -2.2344 25 8 6.2527 0.7304 -0.4963 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8515 0.5681 0.8409 32 1 3.9786 2.1764 0.0890 33 1 5.4100 -0.5290 -3.3487 34 1 8.0672 -0.5109 -2.8613 35 1 9.5164 -0.0798 -0.6915 36 1 8.6628 0.4740 0.7689 37 1 10.0959 1.9459 1.3674 38 1 11.2653 1.9986 0.0265 39 1 12.8105 4.1383 2.5791 40 1 10.7112 1.7822 -2.0429 41 1 9.0321 1.5989 -2.6043 42 1 10.2900 4.2063 -1.6375 43 1 9.5437 3.2476 -4.4377 44 1 10.1508 4.8688 -4.0228 45 1 11.1996 3.4459 -3.8154 46 1 7.8716 4.0845 -1.2044 47 1 8.1872 5.1966 -2.5578 48 1 7.5789 3.5548 -2.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891464178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:49 Heat of formation + Delta-G solvation = -86.003345 kcal Electronic energy + Delta-G solvation = -26625.270325 eV Core-core repulsion = 22875.079830 eV Total energy + Delta-G solvation = -3750.190495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.60827 -39.88849 -39.09262 -38.40803 -35.37254 -34.74130 -33.97180 -32.03338 -30.76800 -28.79383 -27.81444 -27.40531 -26.98517 -25.29199 -24.03737 -22.80321 -22.63451 -21.34007 -20.61346 -19.69800 -18.48368 -18.16814 -17.40734 -16.86189 -16.76838 -16.62126 -16.47487 -16.13393 -15.79329 -15.31874 -15.04827 -14.87421 -14.68170 -14.21357 -14.12235 -13.91726 -13.84599 -13.68720 -13.26047 -13.15503 -12.95305 -12.90770 -12.69200 -12.65422 -12.54404 -12.35668 -12.29870 -12.02992 -11.92701 -11.65226 -11.46557 -11.27339 -10.89630 -10.75916 -10.71192 -10.47520 -9.04914 -8.84154 -8.12726 -6.17978 0.80011 1.41177 1.43092 1.45316 1.55266 1.69704 2.26537 2.44204 2.72666 3.18846 3.37699 3.80685 3.94627 3.99746 4.03554 4.17647 4.21623 4.28239 4.32893 4.36438 4.47672 4.49789 4.54635 4.57368 4.60781 4.74636 4.78727 4.85084 4.85913 4.92305 4.93725 5.03866 5.06918 5.13941 5.16919 5.25022 5.30794 5.45058 5.56152 5.63938 5.77628 5.85893 5.88321 6.13436 6.15012 6.34832 6.45130 6.63240 6.96283 7.48356 8.97589 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.003258 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.150301 B = 8593.228184 C = 9266.010319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.067 3.933 4 C 0.050 3.950 5 O -0.269 6.269 6 C 0.163 3.837 7 C -0.233 4.233 8 C -0.174 4.174 9 C -0.010 4.010 10 C 0.131 3.869 11 N -0.537 5.537 12 C 0.208 3.792 13 C -0.502 4.502 14 H 0.078 0.922 15 C 0.001 3.999 16 N -0.937 5.937 17 Si 0.955 3.045 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.282 1.282 21 C 0.075 3.925 22 C -0.108 4.108 23 C -0.136 4.136 24 C -0.116 4.116 25 O -0.211 6.211 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.001 0.999 38 H -0.028 1.028 39 H 0.261 0.739 40 H 0.017 0.983 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.039 0.961 47 H 0.046 0.954 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.388 -5.668 -8.636 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.009 4.009 4 C -0.025 4.025 5 O -0.184 6.184 6 C 0.069 3.931 7 C -0.253 4.253 8 C -0.194 4.194 9 C -0.058 4.058 10 C 0.003 3.997 11 N -0.262 5.262 12 C 0.083 3.917 13 C -0.541 4.541 14 H 0.096 0.904 15 C -0.197 4.197 16 N -0.579 5.579 17 Si 0.781 3.219 18 H -0.186 1.186 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.052 4.052 22 C -0.126 4.126 23 C -0.194 4.194 24 C -0.173 4.173 25 O -0.113 6.113 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.188 0.812 34 H 0.189 0.811 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.019 0.981 38 H -0.010 1.010 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.752 -5.420 -8.277 21.202 hybrid contribution 0.926 0.511 0.654 1.244 sum -17.827 -4.909 -7.623 20.000 Atomic orbital electron populations 1.22948 0.78981 1.03923 1.01197 1.87918 1.21956 1.28157 1.95712 1.22662 0.89334 0.85559 1.03380 1.23076 0.95646 0.98936 0.84829 1.86469 1.12783 1.78652 1.40543 1.20644 0.80692 1.01521 0.90197 1.20999 0.93013 1.11236 1.00016 1.21584 0.96433 1.05123 0.96259 1.22103 0.83296 1.04310 0.96130 1.20468 0.88087 0.91387 0.99712 1.61965 1.39000 1.20814 1.04372 1.19497 0.86445 0.96044 0.89748 1.21679 1.15453 0.92255 1.24680 0.90380 1.25803 0.95649 1.02564 0.95652 1.70090 1.20928 1.36820 1.30028 0.85532 0.78018 0.80527 0.77821 1.18605 1.20959 1.20763 1.22080 0.97048 0.97302 0.88819 1.21362 0.97858 0.96134 0.97293 1.21749 1.00529 1.01700 0.95416 1.21479 0.95896 0.99225 1.00749 1.83914 1.16060 1.67598 1.43682 0.92987 0.88784 0.92496 0.88138 0.90955 0.91451 0.89258 0.81181 0.81106 0.90487 0.90743 0.98067 1.00986 0.93060 0.96476 0.90485 0.90753 0.91928 0.92357 0.93279 0.94191 0.93494 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.70 10.67 -144.33 -1.54 -10.24 16 3 C 0.07 1.14 6.32 71.98 0.45 1.60 16 4 C 0.05 1.14 6.07 71.98 0.44 1.57 16 5 O -0.27 -7.64 10.17 -65.60 -0.67 -8.31 16 6 C 0.16 5.07 7.87 67.10 0.53 5.60 16 7 C -0.23 -6.49 10.94 22.35 0.24 -6.25 16 8 C -0.17 -4.91 9.50 22.19 0.21 -4.70 16 9 C -0.01 -0.32 6.32 24.82 0.16 -0.16 16 10 C 0.13 4.71 5.49 85.56 0.47 5.18 16 11 N -0.54 -22.53 3.74 -905.37 -3.39 -25.92 16 12 C 0.21 10.71 4.79 85.56 0.41 11.12 16 13 C -0.50 -27.37 7.33 25.60 0.19 -27.18 16 14 H 0.08 4.17 5.12 -2.91 -0.01 4.16 16 15 C 0.00 0.03 5.46 84.65 0.46 0.49 16 16 N -0.94 -55.71 13.29 21.45 0.28 -55.42 16 17 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C 0.08 2.79 4.25 86.30 0.37 3.16 16 22 C -0.11 -3.97 2.44 -10.79 -0.03 -4.00 16 23 C -0.14 -3.98 9.19 71.98 0.66 -3.32 16 24 C -0.12 -4.10 8.61 71.98 0.62 -3.48 16 25 O -0.21 -7.38 10.16 16.84 0.17 -7.21 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 34 H 0.17 3.91 8.04 -2.92 -0.02 3.88 16 35 H 0.08 2.46 8.05 -2.39 -0.02 2.45 16 36 H 0.07 2.79 7.65 -2.39 -0.02 2.77 16 37 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 38 H -0.03 -1.53 7.65 -2.39 -0.02 -1.55 16 39 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.02 0.66 7.66 -2.39 -0.02 0.64 16 41 H 0.08 2.51 6.10 -2.39 -0.01 2.49 16 42 H 0.07 3.32 4.95 -2.39 -0.01 3.31 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 47 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -66.36 388.56 4.24 -62.12 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.92 Total: 17.73 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 6.43 Total: -18.80 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -3.10 Total: -81.34 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -2.04 Total: -25.76 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.36 4.24 -62.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.882 kcal (2) G-P(sol) polarization free energy of solvation -66.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds