Wall clock time and date at job start Fri Apr 10 2020 22:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.46015 * 2 1 4 4 C 1.54481 * 110.50633 * 237.25211 * 2 1 3 5 5 O 1.44427 * 104.80074 * 265.33000 * 4 2 1 6 6 C 1.44420 * 105.27958 * 319.49151 * 5 4 2 7 7 H 1.08999 * 110.46278 * 281.63145 * 6 5 4 8 8 C 1.52996 * 110.37550 * 159.33910 * 6 5 4 9 9 C 1.50704 * 109.47021 * 69.62078 * 8 6 5 10 10 O 1.20823 * 119.99827 * 359.97438 * 9 8 6 11 11 O 1.34225 * 120.00179 * 180.02562 * 9 8 6 12 12 C 1.45197 * 117.00417 * 179.97438 * 11 9 8 13 13 C 1.53034 * 109.46526 * 209.99909 * 12 11 9 14 14 C 1.53188 * 109.31555 * 178.61327 * 13 12 11 15 15 N 1.46924 * 108.77413 * 54.63413 * 14 13 12 16 16 C 1.36943 * 120.62872 * 126.37118 * 15 14 13 17 17 H 1.07992 * 120.00263 * 332.50176 * 16 15 14 18 18 C 1.38814 * 119.99781 * 152.50809 * 16 15 14 19 19 N 1.31628 * 119.99921 * 335.01602 * 18 16 15 20 20 Si 1.86803 * 120.00012 * 155.02565 * 18 16 15 21 21 H 1.48503 * 109.46989 * 89.99441 * 20 18 16 22 22 H 1.48498 * 109.46996 * 329.99586 * 20 18 16 23 23 H 1.48505 * 109.46872 * 209.99631 * 20 18 16 24 24 C 1.46923 * 118.74138 * 306.64037 * 15 14 13 25 25 C 1.52766 * 109.00475 * 53.31294 * 24 15 14 26 26 C 1.54482 * 104.80042 * 40.51024 * 6 5 4 27 27 H 1.09000 * 109.46923 * 297.39651 * 1 2 3 28 28 H 1.09000 * 109.47303 * 57.39102 * 1 2 3 29 29 H 1.08993 * 109.47520 * 177.39125 * 1 2 3 30 30 H 1.08995 * 109.47222 * 182.60505 * 3 2 1 31 31 H 1.09006 * 109.47232 * 302.60911 * 3 2 1 32 32 H 1.09001 * 109.47093 * 62.60788 * 3 2 1 33 33 H 1.08995 * 110.37418 * 24.16433 * 4 2 1 34 34 H 1.09004 * 110.37352 * 146.50549 * 4 2 1 35 35 H 1.09000 * 109.47365 * 309.61956 * 8 6 5 36 36 H 1.08997 * 109.47490 * 189.61791 * 8 6 5 37 37 H 1.09005 * 109.45627 * 329.97655 * 12 11 9 38 38 H 1.09000 * 109.50004 * 58.65873 * 13 12 11 39 39 H 1.09007 * 109.52329 * 298.58243 * 13 12 11 40 40 H 1.09002 * 109.58768 * 294.84610 * 14 13 12 41 41 H 1.09001 * 109.58668 * 174.41931 * 14 13 12 42 42 H 0.96999 * 119.99903 * 354.26451 * 19 18 16 43 43 H 1.08998 * 109.58814 * 173.14195 * 24 15 14 44 44 H 1.09000 * 109.58730 * 293.57445 * 24 15 14 45 45 H 1.08996 * 109.56299 * 185.55537 * 25 24 15 46 46 H 1.09004 * 109.38903 * 65.51511 * 25 24 15 47 47 H 1.08994 * 110.51248 * 94.67018 * 26 6 5 48 48 H 1.09000 * 110.51005 * 217.37937 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0648 1.4335 0.0000 4 6 2.0711 -0.7827 -1.2169 5 8 2.3069 -2.1186 -0.7213 6 6 2.8757 -1.9415 0.5944 7 1 3.9304 -1.6765 0.5210 8 6 2.7040 -3.2151 1.4247 9 6 3.5911 -4.2998 0.8700 10 8 4.2886 -4.0771 -0.0911 11 8 3.6056 -5.5135 1.4431 12 6 4.4835 -6.5095 0.8554 13 6 3.8885 -7.9032 1.0688 14 6 4.7997 -8.9483 0.4176 15 7 6.1602 -8.7855 0.9476 16 6 6.8260 -9.8476 1.4991 17 1 6.2717 -10.6551 1.9540 18 6 8.2133 -9.8862 1.4734 19 7 8.8731 -9.2245 0.5464 20 14 9.1440 -10.8775 2.7544 21 1 9.3438 -12.2630 2.2588 22 1 8.3634 -10.9111 4.0172 23 1 10.4645 -10.2461 3.0053 24 6 6.7908 -7.4602 0.8802 25 6 5.8593 -6.4329 1.5213 26 6 2.0713 -0.7799 1.2189 27 1 -0.3633 0.4729 0.9124 28 1 -0.3634 0.5538 -0.8657 29 1 -0.3634 -1.0265 -0.0468 30 1 3.1536 1.4150 -0.0467 31 1 1.6729 1.9675 -0.8657 32 1 1.7488 1.9391 0.9124 33 1 1.3309 -0.7998 -2.0168 34 1 3.0022 -0.3392 -1.5699 35 1 1.6641 -3.5390 1.3824 36 1 2.9801 -3.0139 2.4598 37 1 4.5862 -6.3181 -0.2128 38 1 2.8988 -7.9498 0.6145 39 1 3.8083 -8.1054 2.1370 40 1 4.8085 -8.8031 -0.6627 41 1 4.4339 -9.9483 0.6509 42 1 8.3906 -8.7786 -0.1673 43 1 7.7382 -7.4784 1.4188 44 1 6.9653 -7.1910 -0.1615 45 1 6.2724 -5.4330 1.3890 46 1 5.7610 -6.6481 2.5854 47 1 1.2491 -1.1654 1.8216 48 1 2.7219 -0.1449 1.8203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892862149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:52 Heat of formation + Delta-G solvation = -131.186558 kcal Electronic energy + Delta-G solvation = -26599.921627 eV Core-core repulsion = 22847.771842 eV Total energy + Delta-G solvation = -3752.149786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65761 -39.86229 -37.61377 -35.90434 -34.86680 -33.00213 -32.51826 -30.41443 -29.57482 -27.97818 -27.74863 -26.17396 -24.97118 -22.90162 -22.31016 -21.63448 -20.38610 -19.71822 -19.31197 -17.57464 -17.50110 -16.65069 -16.24323 -15.83413 -15.45939 -15.29412 -14.40709 -14.38949 -14.15265 -13.87745 -13.54636 -13.50438 -13.46202 -13.33447 -13.03605 -12.66507 -12.57205 -12.27629 -12.24669 -11.89894 -11.73989 -11.68889 -11.40860 -11.18702 -11.05950 -10.94216 -10.86332 -10.69952 -10.62280 -10.41318 -10.22288 -10.08405 -9.98260 -9.88190 -9.54831 -9.31490 -8.38017 -6.92488 -6.08335 -3.24170 2.43860 2.86162 3.50174 3.54584 3.59932 3.69875 4.02919 4.28681 4.45139 4.58817 4.60899 4.68700 4.85051 4.91378 5.06022 5.14960 5.15575 5.20162 5.25261 5.27105 5.30936 5.35574 5.39095 5.41862 5.49648 5.51465 5.54540 5.66961 5.68267 5.74097 5.78362 5.89031 5.91202 6.11363 6.23207 6.34919 6.39672 6.46059 6.61510 6.61904 6.77510 6.88789 7.03477 7.16703 7.99368 8.02182 8.56307 9.09358 9.83204 10.26858 11.20942 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.036166 B = 0.002420 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.014903 B =11569.175045 C =11758.893259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C -0.139 4.139 4 C 0.052 3.948 5 O -0.359 6.359 6 C 0.087 3.913 7 H 0.079 0.921 8 C -0.110 4.110 9 C 0.456 3.544 10 O -0.499 6.499 11 O -0.360 6.360 12 C 0.099 3.901 13 C -0.128 4.128 14 C 0.150 3.850 15 N -0.600 5.600 16 C -0.351 4.351 17 H 0.058 0.942 18 C -0.025 4.025 19 N -0.915 5.915 20 Si 1.067 2.933 21 H -0.294 1.294 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.154 3.846 25 C -0.148 4.148 26 C -0.143 4.143 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.020 0.980 41 H 0.065 0.935 42 H 0.270 0.730 43 H 0.086 0.914 44 H 0.020 0.980 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.011 20.233 1.636 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 C -0.196 4.196 4 C -0.025 4.025 5 O -0.277 6.277 6 C 0.029 3.971 7 H 0.097 0.903 8 C -0.147 4.147 9 C 0.298 3.702 10 O -0.386 6.386 11 O -0.277 6.277 12 C 0.045 3.955 13 C -0.167 4.167 14 C 0.023 3.977 15 N -0.324 5.324 16 C -0.480 4.480 17 H 0.076 0.924 18 C -0.227 4.227 19 N -0.555 5.555 20 Si 0.896 3.104 21 H -0.221 1.221 22 H -0.219 1.219 23 H -0.211 1.211 24 C 0.028 3.972 25 C -0.187 4.187 26 C -0.181 4.181 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.285 19.629 1.797 24.943 hybrid contribution -1.500 0.599 -0.578 1.715 sum -16.785 20.227 1.219 26.313 Atomic orbital electron populations 1.21843 0.93322 1.02307 1.01876 1.21959 0.96776 0.96057 0.95349 1.21849 1.01049 0.94536 1.02156 1.23538 1.00037 0.82942 0.95942 1.89230 1.82662 1.25410 1.30416 1.22766 0.98146 0.92801 0.83366 0.90291 1.21473 1.01050 0.91352 1.00862 1.23394 0.81439 0.83606 0.81717 1.90678 1.40519 1.81402 1.25998 1.86517 1.62316 1.21492 1.57420 1.22843 0.88998 0.85661 0.97978 1.22205 0.98974 0.92785 1.02735 1.20884 0.85896 0.96067 0.94809 1.44184 1.13043 1.05343 1.69783 1.19980 0.91575 1.01696 1.34755 0.92446 1.25893 0.94292 1.01424 1.01058 1.70755 1.38666 1.35073 1.11042 0.83525 0.75872 0.75509 0.75471 1.22111 1.21854 1.21149 1.20845 0.95779 0.83318 0.97275 1.22450 0.94693 1.00274 1.01289 1.23152 1.00440 0.96699 0.97787 0.92387 0.92437 0.92033 0.92255 0.92282 0.92188 0.89124 0.92122 0.87101 0.86533 0.90395 0.92159 0.91082 0.96246 0.91658 0.91938 0.89607 0.96183 0.92613 0.91407 0.90065 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.28 37.16 0.31 -0.52 16 2 C -0.10 -0.71 1.05 -152.94 -0.16 -0.87 16 3 C -0.14 -0.78 8.31 37.16 0.31 -0.47 16 4 C 0.05 0.48 6.74 37.93 0.26 0.74 16 5 O -0.36 -4.58 10.92 -41.86 -0.46 -5.04 16 6 C 0.09 0.92 2.74 -25.96 -0.07 0.84 16 7 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 8 C -0.11 -1.16 5.44 -27.88 -0.15 -1.31 16 9 C 0.46 7.20 7.86 36.01 0.28 7.48 16 10 O -0.50 -9.52 14.83 -22.26 -0.33 -9.85 16 11 O -0.36 -6.15 9.88 -39.25 -0.39 -6.53 16 12 C 0.10 1.90 2.42 -26.69 -0.06 1.83 16 13 C -0.13 -2.37 5.74 -26.62 -0.15 -2.52 16 14 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 15 N -0.60 -15.37 2.86 -172.58 -0.49 -15.86 16 16 C -0.35 -9.88 9.49 -15.06 -0.14 -10.03 16 17 H 0.06 1.61 7.94 -52.49 -0.42 1.19 16 18 C -0.02 -0.71 4.68 -17.43 -0.08 -0.79 16 19 N -0.92 -27.77 12.41 55.49 0.69 -27.08 16 20 Si 1.07 25.39 29.99 -169.99 -5.10 20.29 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.15 3.76 4.66 -3.93 -0.02 3.74 16 25 C -0.15 -3.05 5.70 -26.83 -0.15 -3.20 16 26 C -0.14 -1.03 5.92 -25.16 -0.15 -1.18 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.74 7.87 -51.93 -0.41 0.33 16 34 H 0.06 0.54 7.84 -51.93 -0.41 0.14 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.60 7.16 -51.93 -0.37 1.23 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 42 H 0.27 8.28 6.71 -40.82 -0.27 8.00 16 43 H 0.09 2.31 6.30 -51.93 -0.33 1.98 16 44 H 0.02 0.51 7.87 -51.93 -0.41 0.10 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.08 0.51 7.46 -51.93 -0.39 0.12 16 48 H 0.08 0.49 7.73 -51.93 -0.40 0.09 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -33.27 376.29 -8.94 -42.21 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.51 Total: -0.77 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.01 Total: -3.04 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.20 Total: -42.94 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.17 Total: -21.42 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.27 -8.94 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892862149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.976 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds