Wall clock time and date at job start Fri Apr 10 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.46015 * 2 1 4 4 C 1.54481 * 110.50633 * 237.25211 * 2 1 3 5 5 O 1.44427 * 104.80074 * 265.33000 * 4 2 1 6 6 C 1.44420 * 105.27958 * 319.49151 * 5 4 2 7 7 H 1.08999 * 110.46278 * 281.63145 * 6 5 4 8 8 C 1.52996 * 110.37550 * 159.33910 * 6 5 4 9 9 C 1.50704 * 109.47021 * 69.62078 * 8 6 5 10 10 O 1.20823 * 119.99827 * 359.97438 * 9 8 6 11 11 O 1.34225 * 120.00179 * 180.02562 * 9 8 6 12 12 C 1.45197 * 117.00417 * 179.97438 * 11 9 8 13 13 C 1.53034 * 109.46526 * 209.99909 * 12 11 9 14 14 C 1.53188 * 109.31555 * 178.61327 * 13 12 11 15 15 N 1.46924 * 108.77413 * 54.63413 * 14 13 12 16 16 C 1.36943 * 120.62872 * 126.37118 * 15 14 13 17 17 H 1.07992 * 120.00263 * 332.50176 * 16 15 14 18 18 C 1.38814 * 119.99781 * 152.50809 * 16 15 14 19 19 N 1.31628 * 119.99921 * 335.01602 * 18 16 15 20 20 Si 1.86803 * 120.00012 * 155.02565 * 18 16 15 21 21 H 1.48503 * 109.46989 * 89.99441 * 20 18 16 22 22 H 1.48498 * 109.46996 * 329.99586 * 20 18 16 23 23 H 1.48505 * 109.46872 * 209.99631 * 20 18 16 24 24 C 1.46923 * 118.74138 * 306.64037 * 15 14 13 25 25 C 1.52766 * 109.00475 * 53.31294 * 24 15 14 26 26 C 1.54482 * 104.80042 * 40.51024 * 6 5 4 27 27 H 1.09000 * 109.46923 * 297.39651 * 1 2 3 28 28 H 1.09000 * 109.47303 * 57.39102 * 1 2 3 29 29 H 1.08993 * 109.47520 * 177.39125 * 1 2 3 30 30 H 1.08995 * 109.47222 * 182.60505 * 3 2 1 31 31 H 1.09006 * 109.47232 * 302.60911 * 3 2 1 32 32 H 1.09001 * 109.47093 * 62.60788 * 3 2 1 33 33 H 1.08995 * 110.37418 * 24.16433 * 4 2 1 34 34 H 1.09004 * 110.37352 * 146.50549 * 4 2 1 35 35 H 1.09000 * 109.47365 * 309.61956 * 8 6 5 36 36 H 1.08997 * 109.47490 * 189.61791 * 8 6 5 37 37 H 1.09005 * 109.45627 * 329.97655 * 12 11 9 38 38 H 1.09000 * 109.50004 * 58.65873 * 13 12 11 39 39 H 1.09007 * 109.52329 * 298.58243 * 13 12 11 40 40 H 1.09002 * 109.58768 * 294.84610 * 14 13 12 41 41 H 1.09001 * 109.58668 * 174.41931 * 14 13 12 42 42 H 0.96999 * 119.99903 * 354.26451 * 19 18 16 43 43 H 1.08998 * 109.58814 * 173.14195 * 24 15 14 44 44 H 1.09000 * 109.58730 * 293.57445 * 24 15 14 45 45 H 1.08996 * 109.56299 * 185.55537 * 25 24 15 46 46 H 1.09004 * 109.38903 * 65.51511 * 25 24 15 47 47 H 1.08994 * 110.51248 * 94.67018 * 26 6 5 48 48 H 1.09000 * 110.51005 * 217.37937 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0648 1.4335 0.0000 4 6 2.0711 -0.7827 -1.2169 5 8 2.3069 -2.1186 -0.7213 6 6 2.8757 -1.9415 0.5944 7 1 3.9304 -1.6765 0.5210 8 6 2.7040 -3.2151 1.4247 9 6 3.5911 -4.2998 0.8700 10 8 4.2886 -4.0771 -0.0911 11 8 3.6056 -5.5135 1.4431 12 6 4.4835 -6.5095 0.8554 13 6 3.8885 -7.9032 1.0688 14 6 4.7997 -8.9483 0.4176 15 7 6.1602 -8.7855 0.9476 16 6 6.8260 -9.8476 1.4991 17 1 6.2717 -10.6551 1.9540 18 6 8.2133 -9.8862 1.4734 19 7 8.8731 -9.2245 0.5464 20 14 9.1440 -10.8775 2.7544 21 1 9.3438 -12.2630 2.2588 22 1 8.3634 -10.9111 4.0172 23 1 10.4645 -10.2461 3.0053 24 6 6.7908 -7.4602 0.8802 25 6 5.8593 -6.4329 1.5213 26 6 2.0713 -0.7799 1.2189 27 1 -0.3633 0.4729 0.9124 28 1 -0.3634 0.5538 -0.8657 29 1 -0.3634 -1.0265 -0.0468 30 1 3.1536 1.4150 -0.0467 31 1 1.6729 1.9675 -0.8657 32 1 1.7488 1.9391 0.9124 33 1 1.3309 -0.7998 -2.0168 34 1 3.0022 -0.3392 -1.5699 35 1 1.6641 -3.5390 1.3824 36 1 2.9801 -3.0139 2.4598 37 1 4.5862 -6.3181 -0.2128 38 1 2.8988 -7.9498 0.6145 39 1 3.8083 -8.1054 2.1370 40 1 4.8085 -8.8031 -0.6627 41 1 4.4339 -9.9483 0.6509 42 1 8.3906 -8.7786 -0.1673 43 1 7.7382 -7.4784 1.4188 44 1 6.9653 -7.1910 -0.1615 45 1 6.2724 -5.4330 1.3890 46 1 5.7610 -6.6481 2.5854 47 1 1.2491 -1.1654 1.8216 48 1 2.7219 -0.1449 1.8203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892862149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:51 Heat of formation + Delta-G solvation = -150.092064 kcal Electronic energy + Delta-G solvation = -26600.741432 eV Core-core repulsion = 22847.771842 eV Total energy + Delta-G solvation = -3752.969590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82673 -40.79261 -39.29680 -37.43269 -35.53749 -34.83989 -33.49810 -32.20746 -31.44086 -28.78529 -28.20231 -27.01954 -26.71763 -24.44226 -24.00609 -22.91006 -21.49843 -21.09234 -20.34208 -19.53642 -18.80976 -17.80198 -17.39719 -16.72472 -16.54709 -16.28473 -16.14258 -15.87454 -15.40516 -15.26964 -14.93525 -14.85269 -14.50464 -14.35603 -14.23476 -13.96813 -13.63180 -13.51950 -13.29349 -12.97446 -12.80715 -12.63484 -12.49593 -12.45979 -12.43600 -12.32309 -12.16828 -11.90808 -11.81802 -11.78822 -11.61923 -11.56490 -11.48223 -11.28273 -11.17620 -10.66882 -10.50755 -9.03974 -8.31286 -5.45822 1.19520 1.58145 1.60101 1.67328 1.84274 2.63521 2.87685 3.16590 3.39561 3.41598 3.56030 3.67220 3.73249 3.74024 3.88120 3.93070 4.02664 4.12883 4.19964 4.29019 4.36638 4.37841 4.52413 4.54526 4.54795 4.68682 4.71583 4.74810 4.79112 4.80842 4.82525 4.85164 4.92504 4.97058 5.02386 5.05205 5.06264 5.10674 5.23855 5.25710 5.31803 5.42068 5.54764 5.80419 5.88566 6.32917 6.72540 6.97061 7.70532 8.14936 8.95433 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.036166 B = 0.002420 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.014903 B =11569.175045 C =11758.893259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.137 4.137 4 C 0.044 3.956 5 O -0.393 6.393 6 C 0.081 3.919 7 H 0.059 0.941 8 C -0.101 4.101 9 C 0.451 3.549 10 O -0.538 6.538 11 O -0.354 6.354 12 C 0.106 3.894 13 C -0.114 4.114 14 C 0.145 3.855 15 N -0.618 5.618 16 C -0.356 4.356 17 H 0.059 0.941 18 C -0.078 4.078 19 N -0.943 5.943 20 Si 1.119 2.881 21 H -0.281 1.281 22 H -0.273 1.273 23 H -0.291 1.291 24 C 0.163 3.837 25 C -0.134 4.134 26 C -0.134 4.134 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.253 0.747 43 H 0.055 0.945 44 H 0.001 0.999 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.302 21.258 3.642 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.194 4.194 4 C -0.033 4.033 5 O -0.313 6.313 6 C 0.023 3.977 7 H 0.077 0.923 8 C -0.138 4.138 9 C 0.295 3.705 10 O -0.427 6.427 11 O -0.271 6.271 12 C 0.051 3.949 13 C -0.153 4.153 14 C 0.019 3.981 15 N -0.343 5.343 16 C -0.486 4.486 17 H 0.077 0.923 18 C -0.274 4.274 19 N -0.585 5.585 20 Si 0.943 3.057 21 H -0.208 1.208 22 H -0.198 1.198 23 H -0.217 1.217 24 C 0.036 3.964 25 C -0.173 4.173 26 C -0.172 4.172 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.035 0.965 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.019 0.981 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.116 0.884 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.630 20.669 3.805 27.432 hybrid contribution -0.838 0.326 -1.302 1.583 sum -18.469 20.994 2.503 28.074 Atomic orbital electron populations 1.21828 0.92429 1.01979 1.02860 1.21950 0.97408 0.96364 0.93988 1.21839 1.00698 0.93763 1.03081 1.23716 1.00129 0.82145 0.97278 1.89190 1.82872 1.27482 1.31763 1.22871 0.97711 0.94010 0.83107 0.92260 1.21703 1.00737 0.89132 1.02210 1.24555 0.81231 0.83642 0.81039 1.90674 1.42407 1.81761 1.27871 1.86536 1.61439 1.21852 1.57224 1.22524 0.88620 0.86956 0.96802 1.22009 0.99405 0.91075 1.02762 1.21048 0.84508 0.97701 0.94820 1.44426 1.14359 1.05154 1.70321 1.20273 0.92003 1.02196 1.34104 0.92326 1.27337 0.95749 1.02206 1.02120 1.70885 1.38636 1.37101 1.11904 0.82833 0.74544 0.74554 0.73806 1.20775 1.19792 1.21677 1.20608 0.95476 0.84288 0.95993 1.22220 0.95075 0.99027 1.00988 1.23146 1.00674 0.95469 0.97874 0.91028 0.91915 0.92953 0.92799 0.91777 0.90898 0.88636 0.92738 0.85009 0.83061 0.92167 0.89047 0.90762 0.96536 0.90997 0.93758 0.92683 0.98115 0.92216 0.91154 0.88387 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.28 71.98 0.60 -0.70 16 2 C -0.10 -1.15 1.05 -51.17 -0.05 -1.21 16 3 C -0.14 -1.25 8.31 71.98 0.60 -0.65 16 4 C 0.04 0.78 6.74 72.49 0.49 1.27 16 5 O -0.39 -9.92 10.92 -142.64 -1.56 -11.48 16 6 C 0.08 1.59 2.74 31.10 0.09 1.67 16 7 H 0.06 1.37 7.91 -2.39 -0.02 1.35 16 8 C -0.10 -1.87 5.44 29.85 0.16 -1.71 16 9 C 0.45 13.71 7.86 71.24 0.56 14.27 16 10 O -0.54 -20.75 14.83 25.33 0.38 -20.38 16 11 O -0.35 -11.43 9.88 -51.37 -0.51 -11.94 16 12 C 0.11 3.98 2.42 30.62 0.07 4.05 16 13 C -0.11 -4.01 5.74 30.67 0.18 -3.84 16 14 C 0.14 6.17 6.52 86.36 0.56 6.74 16 15 N -0.62 -32.11 2.86 -699.94 -2.00 -34.11 16 16 C -0.36 -20.20 9.49 84.03 0.80 -19.40 16 17 H 0.06 3.26 7.94 -2.91 -0.02 3.23 16 18 C -0.08 -4.53 4.68 84.86 0.40 -4.13 16 19 N -0.94 -58.98 12.41 21.65 0.27 -58.71 16 20 Si 1.12 51.30 29.99 68.60 2.06 53.36 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 C 0.16 8.22 4.66 86.22 0.40 8.62 16 25 C -0.13 -5.56 5.70 30.53 0.17 -5.39 16 26 C -0.13 -1.56 5.92 31.61 0.19 -1.37 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 1.52 7.87 -2.39 -0.02 1.50 16 34 H 0.05 0.99 7.84 -2.39 -0.02 0.98 16 35 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 2.50 7.16 -2.38 -0.02 2.48 16 38 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 2.94 7.93 -2.39 -0.02 2.92 16 42 H 0.25 16.24 6.71 -92.71 -0.62 15.62 16 43 H 0.05 3.10 6.30 -2.39 -0.02 3.08 16 44 H 0.00 0.05 7.87 -2.39 -0.02 0.03 16 45 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 47 H 0.10 0.84 7.46 -2.39 -0.02 0.82 16 48 H 0.10 0.85 7.73 -2.39 -0.02 0.84 16 Total: -1.00 -74.18 376.29 4.90 -69.28 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.06 Total: 15.75 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 5.21 Total: -1.78 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -1.73 Total: -92.82 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.69 Total: -43.79 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.06 Total: 53.36 kcal Total: -74.18 4.90 -69.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892862149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.813 kcal (2) G-P(sol) polarization free energy of solvation -74.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds