Wall clock time and date at job start Fri Apr 10 2020 22:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 110.45586 * 2 1 4 4 C 1.54486 * 110.51092 * 237.39679 * 2 1 3 5 5 O 1.44649 * 104.69285 * 217.47357 * 4 2 1 6 6 C 1.44415 * 105.37135 * 40.34777 * 5 4 2 7 7 H 1.09001 * 110.37555 * 78.38997 * 6 5 4 8 8 C 1.53002 * 110.37168 * 200.73089 * 6 5 4 9 9 C 1.50692 * 109.47131 * 290.37845 * 8 6 5 10 10 O 1.20822 * 120.00243 * 359.97438 * 9 8 6 11 11 O 1.34232 * 120.00153 * 179.97438 * 9 8 6 12 12 C 1.45192 * 117.00572 * 180.02562 * 11 9 8 13 13 C 1.53041 * 109.46258 * 270.07378 * 12 11 9 14 14 C 1.53186 * 109.31609 * 178.61452 * 13 12 11 15 15 N 1.46919 * 108.77807 * 54.62765 * 14 13 12 16 16 C 1.36938 * 120.63418 * 126.37298 * 15 14 13 17 17 H 1.08000 * 120.00591 * 207.69419 * 16 15 14 18 18 C 1.38820 * 119.99807 * 27.69394 * 16 15 14 19 19 N 1.31621 * 119.99929 * 17.36194 * 18 16 15 20 20 Si 1.86797 * 120.00302 * 197.36637 * 18 16 15 21 21 H 1.48506 * 109.46809 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47378 * 119.99551 * 20 18 16 23 23 H 1.48499 * 109.47111 * 240.00024 * 20 18 16 24 24 C 1.46927 * 118.74323 * 306.39438 * 15 14 13 25 25 C 1.53041 * 109.46537 * 150.00004 * 12 11 9 26 26 C 1.54479 * 104.80474 * 319.56177 * 6 5 4 27 27 H 1.08994 * 109.47623 * 59.30165 * 1 2 3 28 28 H 1.09006 * 109.47169 * 179.30017 * 1 2 3 29 29 H 1.09005 * 109.47237 * 299.29698 * 1 2 3 30 30 H 1.08989 * 109.47393 * 60.70336 * 3 2 1 31 31 H 1.09009 * 109.46877 * 180.70473 * 3 2 1 32 32 H 1.08999 * 109.46967 * 300.69963 * 3 2 1 33 33 H 1.08997 * 110.37270 * 336.20493 * 4 2 1 34 34 H 1.08996 * 110.37462 * 98.54175 * 4 2 1 35 35 H 1.09002 * 109.46869 * 50.38449 * 8 6 5 36 36 H 1.09001 * 109.46984 * 170.37890 * 8 6 5 37 37 H 1.09004 * 109.45744 * 30.02388 * 12 11 9 38 38 H 1.09004 * 109.49279 * 298.56340 * 13 12 11 39 39 H 1.08995 * 109.49995 * 58.65437 * 13 12 11 40 40 H 1.09005 * 109.58291 * 294.84511 * 14 13 12 41 41 H 1.08999 * 109.59159 * 174.42371 * 14 13 12 42 42 H 0.96995 * 120.00370 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58391 * 293.82465 * 24 15 14 44 44 H 1.08992 * 109.59404 * 173.39672 * 24 15 14 45 45 H 1.09002 * 109.49097 * 301.34221 * 25 12 11 46 46 H 1.08998 * 109.49563 * 61.40152 * 25 12 11 47 47 H 1.08994 * 110.51543 * 265.33494 * 26 6 5 48 48 H 1.09000 * 110.62973 * 142.68250 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0646 1.4335 0.0000 4 6 2.0712 -0.7796 -1.2189 5 8 3.2398 -1.4723 -0.7219 6 6 2.8758 -1.9414 0.5945 7 1 2.2563 -2.8353 0.5209 8 6 4.1295 -2.2274 1.4235 9 6 4.8326 -3.4394 0.8691 10 8 4.3776 -4.0157 -0.0904 11 8 5.9646 -3.8789 1.4412 12 6 6.5881 -5.0513 0.8539 13 6 6.0339 -6.3119 1.5215 14 6 6.6681 -7.5478 0.8758 15 7 8.1301 -7.4206 0.9463 16 6 8.8914 -8.4164 1.4977 17 1 9.8415 -8.1803 1.9537 18 6 8.4419 -9.7295 1.4704 19 7 7.4822 -10.0796 0.6404 20 14 9.1988 -10.9998 2.6119 21 1 10.2509 -10.3569 3.4396 22 1 8.1460 -11.5602 3.4965 23 1 9.8018 -12.0920 1.8065 24 6 8.7599 -6.2044 0.4144 25 6 8.1023 -4.9836 1.0654 26 6 2.0714 -0.7798 1.2191 27 1 -0.3634 0.5246 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3634 0.5029 0.8963 30 1 1.7205 1.9497 0.8961 31 1 3.1545 1.4148 -0.0126 32 1 1.7000 1.9573 -0.8836 33 1 1.3285 -1.4949 -1.5721 34 1 2.3463 -0.0913 -2.0180 35 1 4.7980 -1.3676 1.3797 36 1 3.8454 -2.4143 2.4592 37 1 6.3715 -5.0811 -0.2140 38 1 6.2717 -6.2947 2.5852 39 1 4.9524 -6.3475 1.3906 40 1 6.3571 -7.6156 -0.1667 41 1 6.3529 -8.4428 1.4121 42 1 7.1679 -10.9970 0.6216 43 1 8.6194 -6.1626 -0.6658 44 1 9.8249 -6.2129 0.6463 45 1 8.4929 -4.0736 0.6097 46 1 8.3206 -4.9783 2.1333 47 1 2.7219 -0.1448 1.8204 48 1 1.2491 -1.1633 1.8231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892862150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:54 Heat of formation + Delta-G solvation = -128.635475 kcal Electronic energy + Delta-G solvation = -26553.756629 eV Core-core repulsion = 22801.717466 eV Total energy + Delta-G solvation = -3752.039162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58783 -39.78662 -37.42742 -35.74745 -34.82690 -32.83686 -32.42167 -30.26782 -29.68943 -27.95596 -27.72711 -26.14784 -25.11052 -22.83796 -22.20964 -21.60676 -20.31444 -19.67659 -19.26847 -17.49436 -16.99685 -16.48952 -16.18346 -15.79089 -15.34666 -15.20196 -14.77082 -14.37145 -13.97843 -13.82088 -13.57836 -13.46400 -13.34238 -13.03078 -12.90570 -12.64993 -12.49998 -12.20961 -12.14906 -11.87254 -11.66499 -11.50467 -11.18678 -11.14599 -11.12166 -11.02494 -10.90672 -10.74434 -10.62599 -10.29934 -10.16886 -10.14278 -9.88557 -9.84588 -9.62386 -9.36325 -8.47654 -6.71796 -5.79875 -3.22476 2.51206 2.94306 3.37625 3.45265 3.47716 3.62922 4.06204 4.31649 4.47893 4.49078 4.64713 4.73829 4.88976 4.94451 5.11575 5.18365 5.23176 5.27909 5.28951 5.30685 5.39373 5.41944 5.45958 5.48614 5.52051 5.57144 5.57919 5.71069 5.76519 5.79423 5.81626 5.91525 6.05868 6.24311 6.34830 6.50840 6.55091 6.62013 6.65216 6.72383 6.91837 7.03031 7.33448 7.63353 7.79305 8.10171 8.43138 9.19102 9.82298 10.38819 11.29103 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.037027 B = 0.002405 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.032419 B =11639.016561 C =11852.201459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.136 4.136 4 C 0.053 3.947 5 O -0.359 6.359 6 C 0.088 3.912 7 H 0.079 0.921 8 C -0.110 4.110 9 C 0.456 3.544 10 O -0.499 6.499 11 O -0.362 6.362 12 C 0.098 3.902 13 C -0.153 4.153 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.148 3.852 25 C -0.127 4.127 26 C -0.143 4.143 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.094 0.906 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.885 22.551 1.403 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.024 4.024 5 O -0.278 6.278 6 C 0.030 3.970 7 H 0.097 0.903 8 C -0.147 4.147 9 C 0.298 3.702 10 O -0.386 6.386 11 O -0.279 6.279 12 C 0.044 3.956 13 C -0.192 4.192 14 C 0.048 3.952 15 N -0.316 5.316 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 C 0.021 3.979 25 C -0.167 4.167 26 C -0.181 4.181 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.830 22.130 0.973 25.598 hybrid contribution 0.031 -0.736 0.542 0.915 sum -12.798 21.393 1.515 24.975 Atomic orbital electron populations 1.21849 0.93460 1.02161 1.02128 1.21960 0.96286 0.96525 0.95377 1.21843 1.01402 0.94243 1.01849 1.23574 0.88258 0.94705 0.95910 1.89258 1.34727 1.73418 1.30356 1.22758 0.93998 0.96936 0.83341 0.90299 1.21465 0.96722 0.95730 1.00830 1.23356 0.80007 0.85110 0.81714 1.90679 1.64817 1.57020 1.26070 1.86510 1.37586 1.46286 1.57507 1.22892 0.92870 0.81735 0.98055 1.22650 0.99321 0.96139 1.01094 1.20769 0.82656 0.94130 0.97610 1.44139 1.01686 1.16723 1.69027 1.19236 1.03302 0.85999 1.29750 0.91424 1.25073 0.99270 0.97023 0.98373 1.70043 1.31269 1.17470 1.35860 0.86209 0.78543 0.81434 0.80503 1.20199 1.21533 1.21707 1.20893 0.96184 0.85777 0.95049 1.22217 0.92017 0.99837 1.02603 1.23148 1.00194 0.96980 0.97749 0.92299 0.92254 0.92215 0.92409 0.92027 0.92452 0.92107 0.89116 0.87151 0.86587 0.90399 0.91773 0.92877 0.95991 0.88828 0.93585 0.96084 0.91814 0.92317 0.91200 0.90095 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.29 37.15 0.31 -0.49 16 2 C -0.10 -0.72 1.05 -152.94 -0.16 -0.88 16 3 C -0.14 -0.84 8.28 37.16 0.31 -0.54 16 4 C 0.05 0.49 6.76 37.94 0.26 0.74 16 5 O -0.36 -4.64 10.92 -41.82 -0.46 -5.10 16 6 C 0.09 0.93 2.75 -25.95 -0.07 0.86 16 7 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 8 C -0.11 -1.18 5.44 -27.89 -0.15 -1.33 16 9 C 0.46 7.30 7.86 36.00 0.28 7.58 16 10 O -0.50 -9.66 14.83 -22.25 -0.33 -9.99 16 11 O -0.36 -6.24 9.88 -39.26 -0.39 -6.63 16 12 C 0.10 1.90 2.41 -26.69 -0.06 1.84 16 13 C -0.15 -3.20 5.72 -26.61 -0.15 -3.35 16 14 C 0.17 4.34 5.31 -3.72 -0.02 4.33 16 15 N -0.59 -15.20 2.99 -172.33 -0.52 -15.72 16 16 C -0.25 -7.01 9.59 -15.06 -0.14 -7.15 16 17 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 18 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 19 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 20 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 25 C -0.13 -2.36 5.74 -26.61 -0.15 -2.51 16 26 C -0.14 -1.05 5.92 -25.16 -0.15 -1.20 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 34 H 0.09 0.74 7.87 -51.93 -0.41 0.34 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.63 7.16 -51.93 -0.37 1.26 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 2.57 6.04 -51.93 -0.31 2.25 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.08 0.52 7.46 -51.93 -0.39 0.13 16 48 H 0.08 0.50 7.73 -51.93 -0.40 0.10 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -32.58 377.39 -9.01 -41.59 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.58 Total: -1.68 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.02 Total: 1.00 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.10 Total: -41.64 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -1.17 Total: -21.72 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.58 -9.01 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892862150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.044 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds