Wall clock time and date at job start Fri Apr 10 2020 22:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47404 * 2 1 4 4 H 1.09005 * 110.01510 * 64.49213 * 3 2 1 5 5 C 1.54264 * 110.02932 * 303.10516 * 3 2 1 6 6 C 1.54890 * 104.19451 * 217.10784 * 5 3 2 7 7 C 1.54884 * 102.75207 * 37.93896 * 6 5 3 8 8 C 1.54213 * 110.02610 * 185.89475 * 3 2 1 9 9 C 1.53000 * 110.09035 * 238.49557 * 8 3 2 10 10 C 1.50706 * 110.14545 * 0.03850 * 8 3 2 11 11 O 1.21287 * 120.00484 * 115.58395 * 10 8 3 12 12 N 1.34779 * 119.99559 * 295.58689 * 10 8 3 13 13 C 1.37100 * 120.00102 * 355.16060 * 12 10 8 14 14 H 1.08000 * 119.99904 * 19.23673 * 13 12 10 15 15 C 1.38949 * 119.99671 * 199.23639 * 13 12 10 16 16 N 1.31412 * 120.00665 * 5.56560 * 15 13 12 17 17 Si 1.86801 * 119.99753 * 185.56139 * 15 13 12 18 18 H 1.48500 * 109.47125 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47183 * 120.00177 * 17 15 13 20 20 H 1.48505 * 109.47359 * 240.00234 * 17 15 13 21 21 C 1.46501 * 119.99771 * 175.16292 * 12 10 8 22 22 C 1.53003 * 109.47129 * 82.76322 * 21 12 10 23 23 C 1.50702 * 109.46908 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99886 * 0.02562 * 23 22 21 25 25 O 1.34223 * 119.99957 * 180.02562 * 23 22 21 26 26 C 1.45200 * 117.00319 * 180.02562 * 25 23 22 27 27 H 1.08996 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47177 * 300.00586 * 1 2 3 29 29 H 1.09003 * 109.46656 * 60.00088 * 1 2 3 30 30 H 1.08993 * 109.47818 * 239.99801 * 2 1 3 31 31 H 1.09004 * 109.47253 * 119.99443 * 2 1 3 32 32 H 1.09004 * 110.49007 * 98.42444 * 5 3 2 33 33 H 1.09004 * 110.48659 * 335.78372 * 5 3 2 34 34 H 1.09007 * 110.75176 * 279.62325 * 6 5 3 35 35 H 1.08995 * 110.91653 * 156.33195 * 6 5 3 36 36 H 1.09000 * 110.48699 * 80.73425 * 7 6 5 37 37 H 1.08997 * 110.48853 * 203.25209 * 7 6 5 38 38 H 1.08999 * 109.46722 * 311.65465 * 9 8 3 39 39 H 1.09007 * 109.46797 * 71.64523 * 9 8 3 40 40 H 1.08994 * 109.47179 * 191.64568 * 9 8 3 41 41 H 0.96996 * 120.00413 * 179.97438 * 16 15 13 42 42 H 1.09008 * 109.47216 * 202.76196 * 21 12 10 43 43 H 1.08996 * 109.46902 * 322.75985 * 21 12 10 44 44 H 1.08995 * 109.47234 * 299.99874 * 22 21 12 45 45 H 1.09003 * 109.46880 * 60.00276 * 22 21 12 46 46 H 1.08999 * 109.46824 * 300.00128 * 26 25 23 47 47 H 1.09006 * 109.46884 * 59.99552 * 26 25 23 48 48 H 1.08994 * 109.47233 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.7486 1.9413 0.9244 5 6 1.4699 2.2046 -1.2141 6 6 2.6313 3.1253 -1.6642 7 6 3.8784 2.2323 -1.4493 8 6 3.5749 1.4600 -0.1488 9 6 4.2107 2.1743 1.0455 10 6 4.1026 0.0519 -0.2496 11 8 4.6458 -0.3208 -1.2680 12 7 3.9708 -0.7932 0.7920 13 6 3.4471 -0.3445 1.9769 14 1 2.8628 0.5636 1.9995 15 6 3.6679 -1.0580 3.1485 16 7 4.4676 -2.1008 3.1421 17 14 2.8280 -0.5349 4.7330 18 1 1.9846 0.6598 4.4751 19 1 1.9752 -1.6441 5.2307 20 1 3.8560 -0.2050 5.7526 21 6 4.3873 -2.1914 0.6580 22 6 5.8961 -2.2984 0.8884 23 6 6.3244 -3.7367 0.7512 24 8 5.5069 -4.5887 0.4950 25 8 7.6141 -4.0713 0.9137 26 6 7.9545 -5.4752 0.7665 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 0.6044 2.7983 -0.9198 33 1 1.2038 1.5093 -2.0102 34 1 2.6821 4.0167 -1.0389 35 1 2.5274 3.3974 -2.7145 36 1 4.0013 1.5414 -2.2834 37 1 4.7710 2.8462 -1.3289 38 1 3.6975 3.1204 1.2182 39 1 4.1238 1.5468 1.9326 40 1 5.2634 2.3647 0.8368 41 1 4.6220 -2.5986 3.9601 42 1 3.8631 -2.7990 1.3958 43 1 4.1465 -2.5478 -0.3435 44 1 6.4203 -1.6909 0.1507 45 1 6.1369 -1.9419 1.8900 46 1 7.4048 -6.0614 1.5029 47 1 7.6890 -5.8102 -0.2362 48 1 9.0252 -5.6076 0.9219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893166698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:57 Heat of formation + Delta-G solvation = -110.675488 kcal Electronic energy + Delta-G solvation = -28744.661010 eV Core-core repulsion = 24993.400651 eV Total energy + Delta-G solvation = -3751.260359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25650 -39.65250 -36.99460 -35.85282 -35.17715 -32.63079 -31.62651 -31.51210 -29.73508 -27.31873 -26.96274 -25.49724 -24.82737 -23.48510 -21.87823 -20.53025 -19.68417 -19.67015 -18.60564 -17.12821 -16.49258 -16.00487 -15.82759 -15.53813 -15.08499 -14.69534 -14.30102 -13.96297 -13.71479 -13.43518 -13.31355 -12.96941 -12.77979 -12.59120 -12.06133 -12.02480 -11.86774 -11.81546 -11.60912 -11.43903 -11.30571 -11.21357 -10.98056 -10.82195 -10.67810 -10.53977 -10.45409 -10.30517 -10.20855 -10.03260 -10.00582 -9.76523 -9.70525 -9.68941 -9.36208 -8.83008 -8.29255 -7.73840 -6.40533 -4.02659 3.01807 3.05526 3.16369 3.18098 3.36849 3.89630 4.00460 4.71564 4.91360 5.09765 5.17993 5.31142 5.40435 5.46652 5.60355 5.68426 5.80967 5.87419 5.90458 5.95495 6.02292 6.06577 6.10214 6.15904 6.17930 6.28506 6.32968 6.36417 6.44074 6.50971 6.54292 6.59580 6.62133 6.70218 6.78791 6.89600 6.92294 6.99326 7.03331 7.16264 7.24479 7.37937 7.41300 7.48942 7.73956 8.36484 8.50916 8.97800 9.47258 9.86758 10.54890 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.005791 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.581392 B = 4834.076439 C = 5964.186645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.158 4.158 3 C -0.067 4.067 4 H 0.071 0.929 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.106 4.106 8 C -0.062 4.062 9 C -0.159 4.159 10 C 0.482 3.518 11 O -0.603 6.603 12 N -0.449 5.449 13 C -0.324 4.324 14 H 0.118 0.882 15 C 0.032 3.968 16 N -0.872 5.872 17 Si 0.918 3.082 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.158 3.842 22 C -0.108 4.108 23 C 0.475 3.525 24 O -0.521 6.521 25 O -0.369 6.369 26 C 0.036 3.964 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.269 0.731 42 H 0.113 0.887 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.136 0.864 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 3.719 -1.299 3.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.195 4.195 3 C -0.086 4.086 4 H 0.089 0.911 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.144 4.144 8 C -0.065 4.065 9 C -0.216 4.216 10 C 0.271 3.729 11 O -0.489 6.489 12 N -0.167 5.167 13 C -0.451 4.451 14 H 0.135 0.865 15 C -0.171 4.171 16 N -0.511 5.511 17 Si 0.745 3.255 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.034 3.966 22 C -0.146 4.146 23 C 0.320 3.680 24 O -0.409 6.409 25 O -0.286 6.286 26 C -0.058 4.058 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.131 0.869 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.153 0.847 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.592 3.082 -1.703 3.571 hybrid contribution -0.292 -0.056 0.848 0.898 sum -0.885 3.027 -0.856 3.267 Atomic orbital electron populations 1.21764 0.97465 1.00562 1.00437 1.22541 0.94459 0.96393 1.06131 1.21743 0.92705 0.96546 0.97561 0.91110 1.22449 0.97133 0.97806 0.98121 1.22475 0.95796 0.97866 1.00000 1.22348 0.96651 0.97551 0.97851 1.21154 0.95367 0.93709 0.96256 1.22352 0.99082 0.99974 1.00224 1.19959 0.82025 0.86721 0.84155 1.90511 1.48405 1.77940 1.32073 1.43757 1.54396 1.07579 1.10950 1.19893 1.30584 1.10760 0.83815 0.86531 1.25294 0.96335 0.96200 0.99268 1.69937 1.34464 1.18434 1.28277 0.85968 0.79097 0.78831 0.81579 1.19134 1.20604 1.20642 1.20953 0.91885 0.83780 0.99967 1.21943 0.99359 0.86895 1.06408 1.24311 0.79173 0.93307 0.71240 1.90570 1.52826 1.52439 1.45027 1.86557 1.30317 1.28813 1.82924 1.23091 1.00869 0.80097 1.01760 0.93583 0.93436 0.93941 0.92970 0.85489 0.92466 0.91864 0.92142 0.92367 0.90173 0.92384 0.93664 0.87596 0.93713 0.92008 0.86873 0.94232 0.90316 0.84665 0.92380 0.92545 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.63 37.16 0.36 -1.91 16 2 C -0.16 -2.94 3.88 -26.73 -0.10 -3.05 16 3 C -0.07 -1.14 1.78 -89.32 -0.16 -1.30 16 4 H 0.07 1.18 7.19 -51.93 -0.37 0.80 16 5 C -0.12 -1.75 5.21 -25.07 -0.13 -1.88 16 6 C -0.12 -1.77 6.91 -24.74 -0.17 -1.94 16 7 C -0.11 -1.84 5.70 -25.07 -0.14 -1.99 16 8 C -0.06 -1.16 0.61 -154.36 -0.09 -1.26 16 9 C -0.16 -2.83 7.85 37.16 0.29 -2.53 16 10 C 0.48 10.90 4.67 -10.98 -0.05 10.85 16 11 O -0.60 -15.32 14.86 5.55 0.08 -15.24 16 12 N -0.45 -10.23 1.81 -114.81 -0.21 -10.43 16 13 C -0.32 -7.12 4.53 -14.93 -0.07 -7.19 16 14 H 0.12 2.43 3.69 -52.49 -0.19 2.24 16 15 C 0.03 0.73 5.23 -17.47 -0.09 0.63 16 16 N -0.87 -20.36 7.94 55.50 0.44 -19.92 16 17 Si 0.92 17.95 29.56 -169.99 -5.02 12.93 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 C 0.16 3.74 3.75 -4.04 -0.02 3.72 16 22 C -0.11 -2.40 5.50 -27.88 -0.15 -2.55 16 23 C 0.48 10.22 7.96 36.01 0.29 10.50 16 24 O -0.52 -12.13 15.73 -18.75 -0.29 -12.42 16 25 O -0.37 -6.93 10.56 -39.24 -0.41 -7.34 16 26 C 0.04 0.52 10.56 101.05 1.07 1.58 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.60 6.89 -51.93 -0.36 0.25 16 30 H 0.05 1.09 7.19 -51.93 -0.37 0.71 16 31 H 0.13 2.65 3.84 -51.93 -0.20 2.45 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.98 7.44 -51.93 -0.39 0.59 16 34 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.57 6.86 -51.93 -0.36 1.21 16 37 H 0.06 0.96 7.74 -51.93 -0.40 0.55 16 38 H 0.04 0.69 8.05 -51.93 -0.42 0.28 16 39 H 0.11 2.05 4.43 -51.93 -0.23 1.82 16 40 H 0.04 0.78 7.98 -51.93 -0.41 0.37 16 41 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 42 H 0.11 2.87 5.88 -51.92 -0.31 2.56 16 43 H 0.04 0.99 7.68 -51.93 -0.40 0.59 16 44 H 0.08 1.78 7.86 -51.93 -0.41 1.37 16 45 H 0.14 3.15 6.18 -51.93 -0.32 2.83 16 46 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 47 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 48 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -26.28 357.88 -6.86 -33.14 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -7.65 Total: 12.22 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 0.82 Total: 1.68 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.23 Total: -30.36 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.63 Total: -35.01 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.02 Total: 12.93 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.28 -6.86 -33.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893166698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.534 kcal (2) G-P(sol) polarization free energy of solvation -26.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds