Wall clock time and date at job start Fri Apr 10 2020 22:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47404 * 2 1 4 4 H 1.09005 * 110.01510 * 64.49213 * 3 2 1 5 5 C 1.54264 * 110.02932 * 303.10516 * 3 2 1 6 6 C 1.54890 * 104.19451 * 217.10784 * 5 3 2 7 7 C 1.54884 * 102.75207 * 37.93896 * 6 5 3 8 8 C 1.54213 * 110.02610 * 185.89475 * 3 2 1 9 9 C 1.53000 * 110.09035 * 238.49557 * 8 3 2 10 10 C 1.50706 * 110.14545 * 0.03850 * 8 3 2 11 11 O 1.21287 * 120.00484 * 115.58395 * 10 8 3 12 12 N 1.34779 * 119.99559 * 295.58689 * 10 8 3 13 13 C 1.37100 * 120.00102 * 355.16060 * 12 10 8 14 14 H 1.08000 * 119.99904 * 19.23673 * 13 12 10 15 15 C 1.38949 * 119.99671 * 199.23639 * 13 12 10 16 16 N 1.31412 * 120.00665 * 5.56560 * 15 13 12 17 17 Si 1.86801 * 119.99753 * 185.56139 * 15 13 12 18 18 H 1.48500 * 109.47125 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47183 * 120.00177 * 17 15 13 20 20 H 1.48505 * 109.47359 * 240.00234 * 17 15 13 21 21 C 1.46501 * 119.99771 * 175.16292 * 12 10 8 22 22 C 1.53003 * 109.47129 * 82.76322 * 21 12 10 23 23 C 1.50702 * 109.46908 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99886 * 0.02562 * 23 22 21 25 25 O 1.34223 * 119.99957 * 180.02562 * 23 22 21 26 26 C 1.45200 * 117.00319 * 180.02562 * 25 23 22 27 27 H 1.08996 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47177 * 300.00586 * 1 2 3 29 29 H 1.09003 * 109.46656 * 60.00088 * 1 2 3 30 30 H 1.08993 * 109.47818 * 239.99801 * 2 1 3 31 31 H 1.09004 * 109.47253 * 119.99443 * 2 1 3 32 32 H 1.09004 * 110.49007 * 98.42444 * 5 3 2 33 33 H 1.09004 * 110.48659 * 335.78372 * 5 3 2 34 34 H 1.09007 * 110.75176 * 279.62325 * 6 5 3 35 35 H 1.08995 * 110.91653 * 156.33195 * 6 5 3 36 36 H 1.09000 * 110.48699 * 80.73425 * 7 6 5 37 37 H 1.08997 * 110.48853 * 203.25209 * 7 6 5 38 38 H 1.08999 * 109.46722 * 311.65465 * 9 8 3 39 39 H 1.09007 * 109.46797 * 71.64523 * 9 8 3 40 40 H 1.08994 * 109.47179 * 191.64568 * 9 8 3 41 41 H 0.96996 * 120.00413 * 179.97438 * 16 15 13 42 42 H 1.09008 * 109.47216 * 202.76196 * 21 12 10 43 43 H 1.08996 * 109.46902 * 322.75985 * 21 12 10 44 44 H 1.08995 * 109.47234 * 299.99874 * 22 21 12 45 45 H 1.09003 * 109.46880 * 60.00276 * 22 21 12 46 46 H 1.08999 * 109.46824 * 300.00128 * 26 25 23 47 47 H 1.09006 * 109.46884 * 59.99552 * 26 25 23 48 48 H 1.08994 * 109.47233 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.7486 1.9413 0.9244 5 6 1.4699 2.2046 -1.2141 6 6 2.6313 3.1253 -1.6642 7 6 3.8784 2.2323 -1.4493 8 6 3.5749 1.4600 -0.1488 9 6 4.2107 2.1743 1.0455 10 6 4.1026 0.0519 -0.2496 11 8 4.6458 -0.3208 -1.2680 12 7 3.9708 -0.7932 0.7920 13 6 3.4471 -0.3445 1.9769 14 1 2.8628 0.5636 1.9995 15 6 3.6679 -1.0580 3.1485 16 7 4.4676 -2.1008 3.1421 17 14 2.8280 -0.5349 4.7330 18 1 1.9846 0.6598 4.4751 19 1 1.9752 -1.6441 5.2307 20 1 3.8560 -0.2050 5.7526 21 6 4.3873 -2.1914 0.6580 22 6 5.8961 -2.2984 0.8884 23 6 6.3244 -3.7367 0.7512 24 8 5.5069 -4.5887 0.4950 25 8 7.6141 -4.0713 0.9137 26 6 7.9545 -5.4752 0.7665 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 0.6044 2.7983 -0.9198 33 1 1.2038 1.5093 -2.0102 34 1 2.6821 4.0167 -1.0389 35 1 2.5274 3.3974 -2.7145 36 1 4.0013 1.5414 -2.2834 37 1 4.7710 2.8462 -1.3289 38 1 3.6975 3.1204 1.2182 39 1 4.1238 1.5468 1.9326 40 1 5.2634 2.3647 0.8368 41 1 4.6220 -2.5986 3.9601 42 1 3.8631 -2.7990 1.3958 43 1 4.1465 -2.5478 -0.3435 44 1 6.4203 -1.6909 0.1507 45 1 6.1369 -1.9419 1.8900 46 1 7.4048 -6.0614 1.5029 47 1 7.6890 -5.8102 -0.2362 48 1 9.0252 -5.6076 0.9219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893166698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:56 Heat of formation + Delta-G solvation = -122.728190 kcal Electronic energy + Delta-G solvation = -28745.183655 eV Core-core repulsion = 24993.400651 eV Total energy + Delta-G solvation = -3751.783003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88390 -41.30528 -38.56080 -37.51838 -36.98582 -34.03936 -33.36191 -33.16238 -31.27600 -28.67049 -28.26744 -27.13498 -26.33893 -25.19204 -23.25047 -22.14154 -21.40795 -20.98479 -20.29605 -18.83027 -18.15377 -17.65575 -17.43617 -17.15532 -16.40962 -16.31974 -15.98288 -15.51965 -15.24140 -14.99084 -14.83777 -14.39856 -14.25854 -14.10725 -13.72695 -13.46086 -13.37619 -13.22110 -13.13213 -12.92595 -12.87877 -12.68580 -12.63719 -12.30326 -12.12546 -11.95224 -11.88652 -11.77423 -11.73437 -11.68239 -11.48874 -11.31679 -11.24899 -11.09881 -10.87898 -10.55818 -10.07770 -9.55657 -8.14557 -5.80510 1.27030 1.47698 1.56214 1.65554 1.80931 2.16997 2.36042 3.04466 3.20961 3.77138 3.83091 3.95158 4.07433 4.27083 4.30714 4.31367 4.41863 4.47246 4.53947 4.58051 4.59548 4.64026 4.67275 4.75107 4.81520 4.82931 4.86997 4.92421 5.03874 5.11067 5.17442 5.20600 5.25213 5.30652 5.32590 5.40653 5.42389 5.47624 5.52309 5.54479 5.62460 5.67894 5.77292 5.88211 5.94765 6.56702 6.81226 7.21142 7.68811 8.08751 8.81747 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.005791 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.581392 B = 4834.076439 C = 5964.186645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.154 4.154 3 C -0.065 4.065 4 H 0.086 0.914 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.107 4.107 8 C -0.064 4.064 9 C -0.153 4.153 10 C 0.470 3.530 11 O -0.642 6.642 12 N -0.452 5.452 13 C -0.323 4.323 14 H 0.133 0.867 15 C -0.007 4.007 16 N -0.896 5.896 17 Si 0.978 3.022 18 H -0.249 1.249 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.168 3.832 22 C -0.095 4.095 23 C 0.480 3.520 24 O -0.543 6.543 25 O -0.370 6.370 26 C 0.028 3.972 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.015 0.985 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.266 0.734 42 H 0.097 0.903 43 H 0.013 0.987 44 H 0.070 0.930 45 H 0.129 0.871 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 5.999 -0.467 6.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.191 4.191 3 C -0.084 4.084 4 H 0.105 0.895 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.145 4.145 8 C -0.067 4.067 9 C -0.210 4.210 10 C 0.261 3.739 11 O -0.531 6.531 12 N -0.169 5.169 13 C -0.449 4.449 14 H 0.150 0.850 15 C -0.208 4.208 16 N -0.537 5.537 17 Si 0.803 3.197 18 H -0.172 1.172 19 H -0.217 1.217 20 H -0.210 1.210 21 C 0.043 3.957 22 C -0.134 4.134 23 C 0.325 3.675 24 O -0.434 6.434 25 O -0.287 6.287 26 C -0.065 4.065 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.031 0.969 44 H 0.088 0.912 45 H 0.147 0.853 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.559 5.376 -0.866 5.664 hybrid contribution 0.101 -0.888 0.545 1.046 sum -1.458 4.489 -0.321 4.731 Atomic orbital electron populations 1.21706 0.94932 1.00927 1.02025 1.22383 0.96704 0.97037 1.03014 1.21778 0.91278 0.95809 0.99533 0.89533 1.22432 0.98317 0.97722 0.96579 1.22454 0.93229 0.97662 1.01623 1.22326 0.98874 0.97485 0.95861 1.21267 0.96732 0.91037 0.97692 1.22278 0.99195 1.00910 0.98659 1.20771 0.81523 0.88321 0.83294 1.90474 1.50148 1.79077 1.33397 1.43905 1.54235 1.07072 1.11658 1.20199 1.30325 1.11085 0.83272 0.85029 1.26010 0.96814 0.96209 1.01745 1.70046 1.35608 1.19379 1.28632 0.85051 0.78023 0.78640 0.77984 1.17199 1.21679 1.21041 1.20684 0.92750 0.84645 0.97577 1.21686 0.98285 0.87892 1.05530 1.24008 0.80021 0.92631 0.70833 1.90552 1.53733 1.52885 1.46210 1.86514 1.28221 1.31762 1.82218 1.23525 1.03546 0.77364 1.02114 0.93981 0.91779 0.92261 0.96581 0.88020 0.89492 0.92999 0.89785 0.90767 0.93287 0.91750 0.90383 0.89229 0.94220 0.92364 0.88538 0.96911 0.91159 0.85339 0.92298 0.92195 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.63 71.98 0.69 -3.40 16 2 C -0.15 -5.71 3.88 30.60 0.12 -5.59 16 3 C -0.07 -2.10 1.78 -9.95 -0.02 -2.12 16 4 H 0.09 2.55 7.19 -2.38 -0.02 2.53 16 5 C -0.11 -3.01 5.21 31.67 0.16 -2.85 16 6 C -0.11 -2.83 6.91 31.88 0.22 -2.61 16 7 C -0.11 -3.63 5.70 31.67 0.18 -3.45 16 8 C -0.06 -2.38 0.61 -52.08 -0.03 -2.41 16 9 C -0.15 -5.15 7.85 71.98 0.57 -4.59 16 10 C 0.47 22.02 4.67 87.66 0.41 22.43 16 11 O -0.64 -34.46 14.86 -3.05 -0.05 -34.50 16 12 N -0.45 -21.42 1.81 -635.52 -1.15 -22.56 16 13 C -0.32 -14.30 4.53 84.04 0.38 -13.92 16 14 H 0.13 5.34 3.69 -2.91 -0.01 5.33 16 15 C -0.01 -0.33 5.23 84.93 0.44 0.11 16 16 N -0.90 -43.04 7.94 21.66 0.17 -42.87 16 17 Si 0.98 36.30 29.56 68.60 2.03 38.33 16 18 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 19 H -0.29 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 21 C 0.17 8.44 3.75 86.38 0.32 8.77 16 22 C -0.10 -4.48 5.50 29.85 0.16 -4.32 16 23 C 0.48 21.36 7.96 71.24 0.57 21.93 16 24 O -0.54 -26.30 15.73 21.97 0.35 -25.95 16 25 O -0.37 -13.94 10.56 -51.35 -0.54 -14.48 16 26 C 0.03 0.75 10.56 113.37 1.20 1.95 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.54 6.89 -2.39 -0.02 1.53 16 30 H 0.02 0.68 7.19 -2.39 -0.02 0.66 16 31 H 0.10 4.30 3.84 -2.39 -0.01 4.29 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.50 7.44 -2.38 -0.02 1.48 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.95 6.86 -2.39 -0.02 1.94 16 37 H 0.06 2.04 7.74 -2.39 -0.02 2.02 16 38 H 0.08 2.10 8.05 -2.39 -0.02 2.08 16 39 H 0.09 3.33 4.43 -2.38 -0.01 3.32 16 40 H 0.04 1.34 7.98 -2.39 -0.02 1.32 16 41 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 42 H 0.10 5.19 5.88 -2.38 -0.01 5.17 16 43 H 0.01 0.68 7.68 -2.39 -0.02 0.67 16 44 H 0.07 3.37 7.86 -2.39 -0.02 3.35 16 45 H 0.13 6.25 6.18 -2.39 -0.01 6.23 16 46 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 47 H 0.06 1.61 8.13 -2.38 -0.02 1.59 16 48 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -60.03 357.88 7.15 -52.88 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: 0.96 Total: 39.21 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.38 Total: 9.95 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.98 Total: -65.43 kcal Atomic # 8 Polarization: -74.69 SS G_CDS: -0.24 Total: -74.93 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -60.03 7.15 -52.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893166698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.846 kcal (2) G-P(sol) polarization free energy of solvation -60.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds