Wall clock time and date at job start Fri Apr 10 2020 22:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09004 * 110.01121 * 54.94167 * 3 2 1 5 5 C 1.54270 * 110.03568 * 293.55274 * 3 2 1 6 6 C 1.54888 * 104.19523 * 217.05294 * 5 3 2 7 7 C 1.54886 * 102.74863 * 37.94176 * 6 5 3 8 8 C 1.53873 * 110.07728 * 176.35694 * 3 2 1 9 9 C 1.53001 * 110.02748 * 0.02696 * 8 3 2 10 10 C 1.50696 * 110.03464 * 238.59600 * 8 3 2 11 11 O 1.21299 * 119.99910 * 9.90662 * 10 8 3 12 12 N 1.34775 * 120.00231 * 189.90788 * 10 8 3 13 13 C 1.37093 * 119.99911 * 5.03274 * 12 10 8 14 14 H 1.08001 * 120.00344 * 320.70238 * 13 12 10 15 15 C 1.38950 * 120.00173 * 140.69702 * 13 12 10 16 16 N 1.31409 * 120.00514 * 167.38958 * 15 13 12 17 17 Si 1.86801 * 119.99665 * 347.38684 * 15 13 12 18 18 H 1.48505 * 109.46831 * 90.84646 * 17 15 13 19 19 H 1.48495 * 109.47416 * 210.83944 * 17 15 13 20 20 H 1.48495 * 109.47503 * 330.84493 * 17 15 13 21 21 C 1.46502 * 119.99946 * 185.03926 * 12 10 8 22 22 C 1.53002 * 109.47207 * 84.27775 * 21 12 10 23 23 C 1.50705 * 109.46962 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99797 * 359.97438 * 23 22 21 25 25 O 1.34228 * 120.00099 * 179.97438 * 23 22 21 26 26 C 1.45192 * 117.00116 * 179.97438 * 25 23 22 27 27 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47059 * 299.99512 * 1 2 3 29 29 H 1.09003 * 109.47299 * 59.99241 * 1 2 3 30 30 H 1.09004 * 109.46685 * 240.00874 * 2 1 3 31 31 H 1.08989 * 109.47524 * 120.00631 * 2 1 3 32 32 H 1.08998 * 110.48748 * 98.37349 * 5 3 2 33 33 H 1.08994 * 110.59738 * 335.78947 * 5 3 2 34 34 H 1.09002 * 110.75426 * 279.62706 * 6 5 3 35 35 H 1.09000 * 110.75268 * 156.25780 * 6 5 3 36 36 H 1.08993 * 110.48809 * 80.73530 * 7 6 5 37 37 H 1.09001 * 110.48669 * 203.38071 * 7 6 5 38 38 H 1.09008 * 109.46799 * 183.28399 * 9 8 3 39 39 H 1.09004 * 109.47262 * 303.27866 * 9 8 3 40 40 H 1.08993 * 109.47246 * 63.28499 * 9 8 3 41 41 H 0.96999 * 120.00535 * 179.97438 * 16 15 13 42 42 H 1.09008 * 109.46703 * 204.27360 * 21 12 10 43 43 H 1.08994 * 109.47085 * 324.27426 * 21 12 10 44 44 H 1.08999 * 109.46781 * 299.99654 * 22 21 12 45 45 H 1.08994 * 109.47382 * 59.99834 * 22 21 12 46 46 H 1.08999 * 109.46985 * 59.99829 * 26 25 23 47 47 H 1.09001 * 109.47521 * 179.97438 * 26 25 23 48 48 H 1.09001 * 109.47434 * 300.00193 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6097 1.9903 0.8384 5 6 1.6702 2.1338 -1.3286 6 6 2.8911 3.0343 -1.6409 7 6 4.0858 2.1607 -1.1842 8 6 3.5759 1.4596 0.0918 9 6 4.1132 0.0284 0.1538 10 6 4.0116 2.2285 1.3125 11 8 3.1924 2.5659 2.1410 12 7 5.3113 2.5412 1.4836 13 6 6.2213 2.2515 0.5000 14 1 6.1467 1.3242 -0.0486 15 6 7.2396 3.1509 0.2088 16 7 8.2484 2.7793 -0.5468 17 14 7.1745 4.8885 0.8916 18 1 7.8728 4.9320 2.2015 19 1 7.8411 5.8178 -0.0556 20 1 5.7583 5.2969 1.0717 21 6 5.7517 3.1907 2.7208 22 6 6.0013 2.1286 3.7934 23 6 6.4549 2.7966 5.0659 24 8 6.5675 3.9988 5.1100 25 8 6.7339 2.0561 6.1501 26 6 7.1658 2.7667 7.3403 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 0.7715 2.7384 -1.2068 33 1 1.5284 1.3961 -2.1183 34 1 2.8464 3.9589 -1.0654 35 1 2.9525 3.2451 -2.7085 36 1 4.3356 1.4258 -1.9494 37 1 4.9500 2.7850 -0.9570 38 1 5.1960 0.0518 0.2773 39 1 3.6624 -0.4927 0.9984 40 1 3.8641 -0.4935 -0.7701 41 1 8.9591 3.4072 -0.7504 42 1 6.6735 3.7417 2.5336 43 1 4.9800 3.8795 3.0641 44 1 5.0796 1.5776 3.9805 45 1 6.7730 1.4397 3.4501 46 1 6.3854 3.4607 7.6525 47 1 7.3574 2.0521 8.1408 48 1 8.0785 3.3210 7.1215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893166702.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:59 Heat of formation + Delta-G solvation = -122.668138 kcal Electronic energy + Delta-G solvation = -28228.748473 eV Core-core repulsion = 24476.968073 eV Total energy + Delta-G solvation = -3751.780399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35723 -39.96310 -37.41585 -36.29998 -35.16176 -32.86318 -32.29561 -31.49412 -30.33733 -27.68652 -26.98773 -25.14608 -24.79557 -24.11105 -22.49349 -20.72263 -20.50904 -19.31056 -18.04439 -17.55155 -16.90978 -16.50412 -16.38311 -15.67325 -15.12760 -14.76149 -14.73716 -14.11905 -13.94913 -13.69753 -13.50855 -13.12054 -13.07417 -12.78770 -12.68026 -12.61395 -12.36978 -12.12210 -11.86652 -11.77085 -11.54626 -11.30633 -11.18054 -10.95235 -10.69384 -10.66087 -10.44514 -10.37867 -10.24730 -10.06256 -10.06066 -9.92696 -9.84834 -9.74020 -9.64994 -9.13580 -8.47232 -7.85288 -6.49783 -4.15165 2.47838 2.88088 3.08816 3.23405 3.30816 3.69459 4.08622 4.30134 4.87956 5.08118 5.10630 5.14511 5.14634 5.20777 5.26095 5.47406 5.49328 5.53390 5.59945 5.64311 5.69012 5.80327 5.94905 5.98971 6.03202 6.09617 6.11872 6.18829 6.21421 6.26617 6.28998 6.33902 6.43431 6.47052 6.53126 6.57962 6.59933 6.65157 6.69514 6.88686 6.98741 7.04344 7.27512 7.40674 7.97851 8.03654 8.21449 8.87663 9.27202 9.59865 10.58239 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.005508 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.161707 B = 5082.095593 C = 6456.142435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.084 4.084 4 H 0.091 0.909 5 C -0.115 4.115 6 C -0.129 4.129 7 C -0.124 4.124 8 C -0.055 4.055 9 C -0.141 4.141 10 C 0.500 3.500 11 O -0.592 6.592 12 N -0.469 5.469 13 C -0.342 4.342 14 H 0.121 0.879 15 C 0.066 3.934 16 N -0.863 5.863 17 Si 0.873 3.127 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.261 1.261 21 C 0.110 3.890 22 C -0.123 4.123 23 C 0.467 3.533 24 O -0.510 6.510 25 O -0.362 6.362 26 C 0.035 3.965 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.276 0.724 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 -4.336 3.731 8.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.102 4.102 4 H 0.109 0.891 5 C -0.152 4.152 6 C -0.166 4.166 7 C -0.161 4.161 8 C -0.058 4.058 9 C -0.198 4.198 10 C 0.289 3.711 11 O -0.476 6.476 12 N -0.189 5.189 13 C -0.468 4.468 14 H 0.138 0.862 15 C -0.142 4.142 16 N -0.498 5.498 17 Si 0.701 3.299 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.185 1.185 21 C -0.013 4.013 22 C -0.161 4.161 23 C 0.310 3.690 24 O -0.398 6.398 25 O -0.279 6.279 26 C -0.059 4.059 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.119 -3.748 4.082 8.255 hybrid contribution 0.361 1.069 0.490 1.230 sum -5.758 -2.679 4.572 7.826 Atomic orbital electron populations 1.21805 0.96754 1.00676 1.01603 1.21711 0.94824 0.96930 1.01684 1.21846 0.93924 0.95807 0.98645 0.89101 1.22411 0.97678 0.98233 0.96903 1.22537 0.95613 0.98541 0.99925 1.22861 0.99570 0.99490 0.94178 1.20937 0.94667 0.95611 0.94613 1.22062 1.02620 0.94137 1.00943 1.20348 0.81592 0.81683 0.87434 1.90512 1.52201 1.57911 1.46959 1.43685 1.06301 1.55208 1.13731 1.19323 1.07430 1.06091 1.13965 0.86154 1.25338 0.95233 0.98030 0.95564 1.69650 1.08477 1.35847 1.35810 0.87040 0.79850 0.84799 0.78196 1.19637 1.21699 1.18499 1.21475 1.00880 0.93961 0.84993 1.21822 1.04298 1.01210 0.88818 1.24029 0.73362 0.86459 0.85170 1.90648 1.48912 1.16123 1.84115 1.86534 1.78072 1.41888 1.21438 1.23203 1.00129 0.97802 0.84804 0.93494 0.92975 0.92989 0.92155 0.91863 0.92723 0.92190 0.92192 0.92326 0.92036 0.86396 0.90577 0.93124 0.92498 0.91361 0.90502 0.90517 0.87506 0.86824 0.92106 0.88398 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.75 37.16 0.36 -1.48 16 2 C -0.11 -1.60 4.11 -26.73 -0.11 -1.71 16 3 C -0.08 -1.39 2.52 -89.50 -0.23 -1.62 16 4 H 0.09 1.74 6.45 -51.93 -0.33 1.41 16 5 C -0.11 -1.73 5.46 -25.07 -0.14 -1.86 16 6 C -0.13 -2.15 6.91 -24.74 -0.17 -2.32 16 7 C -0.12 -2.31 4.87 -25.07 -0.12 -2.44 16 8 C -0.06 -1.03 0.61 -154.54 -0.09 -1.12 16 9 C -0.14 -2.36 7.01 37.16 0.26 -2.10 16 10 C 0.50 10.99 6.44 -10.99 -0.07 10.92 16 11 O -0.59 -14.18 14.91 5.54 0.08 -14.09 16 12 N -0.47 -10.59 2.22 -114.81 -0.25 -10.84 16 13 C -0.34 -8.07 6.11 -14.94 -0.09 -8.16 16 14 H 0.12 2.89 4.75 -52.49 -0.25 2.64 16 15 C 0.07 1.64 5.30 -17.47 -0.09 1.55 16 16 N -0.86 -22.52 13.96 55.50 0.77 -21.75 16 17 Si 0.87 20.65 24.66 -169.99 -4.19 16.46 16 18 H -0.27 -6.44 6.63 56.52 0.37 -6.06 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.26 -6.34 7.03 56.52 0.40 -5.94 16 21 C 0.11 2.44 3.13 -4.04 -0.01 2.43 16 22 C -0.12 -2.29 6.09 -27.88 -0.17 -2.46 16 23 C 0.47 8.57 7.96 36.01 0.29 8.86 16 24 O -0.51 -10.68 15.73 -18.75 -0.29 -10.97 16 25 O -0.36 -5.66 10.56 -39.25 -0.41 -6.08 16 26 C 0.03 0.41 10.56 101.05 1.07 1.47 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.60 7.46 -51.93 -0.39 0.21 16 30 H 0.06 0.79 6.96 -51.93 -0.36 0.43 16 31 H 0.06 0.91 6.43 -51.93 -0.33 0.58 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.82 7.79 -51.93 -0.40 0.41 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.08 7.79 -51.93 -0.40 0.68 16 37 H 0.12 2.59 4.91 -51.93 -0.25 2.33 16 38 H 0.08 1.40 5.46 -51.92 -0.28 1.12 16 39 H 0.05 0.81 6.44 -51.93 -0.33 0.47 16 40 H 0.06 0.84 6.95 -51.93 -0.36 0.48 16 41 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.08 1.81 2.91 -51.92 -0.15 1.65 16 43 H 0.08 1.78 7.49 -51.93 -0.39 1.39 16 44 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 45 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 46 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -28.31 361.13 -5.82 -34.13 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.64 Total: 7.73 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 0.68 Total: -0.04 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.52 Total: -32.59 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.63 Total: -31.14 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.19 Total: 16.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.31 -5.82 -34.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893166702.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.536 kcal (2) G-P(sol) polarization free energy of solvation -28.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds