Wall clock time and date at job start Fri Apr 10 2020 22:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09004 * 110.01121 * 54.94167 * 3 2 1 5 5 C 1.54270 * 110.03568 * 293.55274 * 3 2 1 6 6 C 1.54888 * 104.19523 * 217.05294 * 5 3 2 7 7 C 1.54886 * 102.74863 * 37.94176 * 6 5 3 8 8 C 1.53873 * 110.07728 * 176.35694 * 3 2 1 9 9 C 1.53001 * 110.02748 * 0.02696 * 8 3 2 10 10 C 1.50696 * 110.03464 * 238.59600 * 8 3 2 11 11 O 1.21299 * 119.99910 * 9.90662 * 10 8 3 12 12 N 1.34775 * 120.00231 * 189.90788 * 10 8 3 13 13 C 1.37093 * 119.99911 * 5.03274 * 12 10 8 14 14 H 1.08001 * 120.00344 * 320.70238 * 13 12 10 15 15 C 1.38950 * 120.00173 * 140.69702 * 13 12 10 16 16 N 1.31409 * 120.00514 * 167.38958 * 15 13 12 17 17 Si 1.86801 * 119.99665 * 347.38684 * 15 13 12 18 18 H 1.48505 * 109.46831 * 90.84646 * 17 15 13 19 19 H 1.48495 * 109.47416 * 210.83944 * 17 15 13 20 20 H 1.48495 * 109.47503 * 330.84493 * 17 15 13 21 21 C 1.46502 * 119.99946 * 185.03926 * 12 10 8 22 22 C 1.53002 * 109.47207 * 84.27775 * 21 12 10 23 23 C 1.50705 * 109.46962 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99797 * 359.97438 * 23 22 21 25 25 O 1.34228 * 120.00099 * 179.97438 * 23 22 21 26 26 C 1.45192 * 117.00116 * 179.97438 * 25 23 22 27 27 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47059 * 299.99512 * 1 2 3 29 29 H 1.09003 * 109.47299 * 59.99241 * 1 2 3 30 30 H 1.09004 * 109.46685 * 240.00874 * 2 1 3 31 31 H 1.08989 * 109.47524 * 120.00631 * 2 1 3 32 32 H 1.08998 * 110.48748 * 98.37349 * 5 3 2 33 33 H 1.08994 * 110.59738 * 335.78947 * 5 3 2 34 34 H 1.09002 * 110.75426 * 279.62706 * 6 5 3 35 35 H 1.09000 * 110.75268 * 156.25780 * 6 5 3 36 36 H 1.08993 * 110.48809 * 80.73530 * 7 6 5 37 37 H 1.09001 * 110.48669 * 203.38071 * 7 6 5 38 38 H 1.09008 * 109.46799 * 183.28399 * 9 8 3 39 39 H 1.09004 * 109.47262 * 303.27866 * 9 8 3 40 40 H 1.08993 * 109.47246 * 63.28499 * 9 8 3 41 41 H 0.96999 * 120.00535 * 179.97438 * 16 15 13 42 42 H 1.09008 * 109.46703 * 204.27360 * 21 12 10 43 43 H 1.08994 * 109.47085 * 324.27426 * 21 12 10 44 44 H 1.08999 * 109.46781 * 299.99654 * 22 21 12 45 45 H 1.08994 * 109.47382 * 59.99834 * 22 21 12 46 46 H 1.08999 * 109.46985 * 59.99829 * 26 25 23 47 47 H 1.09001 * 109.47521 * 179.97438 * 26 25 23 48 48 H 1.09001 * 109.47434 * 300.00193 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6097 1.9903 0.8384 5 6 1.6702 2.1338 -1.3286 6 6 2.8911 3.0343 -1.6409 7 6 4.0858 2.1607 -1.1842 8 6 3.5759 1.4596 0.0918 9 6 4.1132 0.0284 0.1538 10 6 4.0116 2.2285 1.3125 11 8 3.1924 2.5659 2.1410 12 7 5.3113 2.5412 1.4836 13 6 6.2213 2.2515 0.5000 14 1 6.1467 1.3242 -0.0486 15 6 7.2396 3.1509 0.2088 16 7 8.2484 2.7793 -0.5468 17 14 7.1745 4.8885 0.8916 18 1 7.8728 4.9320 2.2015 19 1 7.8411 5.8178 -0.0556 20 1 5.7583 5.2969 1.0717 21 6 5.7517 3.1907 2.7208 22 6 6.0013 2.1286 3.7934 23 6 6.4549 2.7966 5.0659 24 8 6.5675 3.9988 5.1100 25 8 6.7339 2.0561 6.1501 26 6 7.1658 2.7667 7.3403 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 0.7715 2.7384 -1.2068 33 1 1.5284 1.3961 -2.1183 34 1 2.8464 3.9589 -1.0654 35 1 2.9525 3.2451 -2.7085 36 1 4.3356 1.4258 -1.9494 37 1 4.9500 2.7850 -0.9570 38 1 5.1960 0.0518 0.2773 39 1 3.6624 -0.4927 0.9984 40 1 3.8641 -0.4935 -0.7701 41 1 8.9591 3.4072 -0.7504 42 1 6.6735 3.7417 2.5336 43 1 4.9800 3.8795 3.0641 44 1 5.0796 1.5776 3.9805 45 1 6.7730 1.4397 3.4501 46 1 6.3854 3.4607 7.6525 47 1 7.3574 2.0521 8.1408 48 1 8.0785 3.3210 7.1215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893166702.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:58 Heat of formation + Delta-G solvation = -137.713377 kcal Electronic energy + Delta-G solvation = -28229.400883 eV Core-core repulsion = 24476.968073 eV Total energy + Delta-G solvation = -3752.432810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90303 -41.45029 -38.93546 -37.71712 -36.99208 -34.29182 -33.93612 -33.02334 -31.81578 -28.84904 -28.22805 -26.97996 -26.28200 -25.58702 -23.71579 -22.18289 -21.98247 -20.88679 -19.69062 -19.02512 -18.49532 -18.01998 -17.78417 -17.30674 -16.83713 -16.27697 -16.20290 -15.53743 -15.28775 -15.24261 -15.01056 -14.58040 -14.48017 -14.34288 -14.13968 -14.07738 -13.86167 -13.63332 -13.16031 -13.11109 -12.98783 -12.95129 -12.66701 -12.31631 -12.22084 -11.94954 -11.87622 -11.82388 -11.74485 -11.66891 -11.51818 -11.43029 -11.26734 -11.15301 -11.06578 -10.89655 -10.27392 -9.70889 -8.46215 -6.08152 1.00855 1.14753 1.27258 1.35160 1.53816 1.92541 2.13938 2.63073 2.97096 3.65115 3.74991 3.77885 3.84235 3.95758 4.03784 4.25504 4.26396 4.31403 4.36799 4.39494 4.47757 4.55313 4.58130 4.62019 4.63676 4.70466 4.76218 4.83302 4.91151 4.93924 5.04928 5.09619 5.16130 5.21300 5.22991 5.25188 5.32245 5.33519 5.40793 5.50434 5.56958 5.59420 5.75709 5.82125 6.17085 6.31095 6.57314 6.96856 7.41810 7.76998 8.65006 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.005508 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.161707 B = 5082.095593 C = 6456.142435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.082 4.082 4 H 0.061 0.939 5 C -0.105 4.105 6 C -0.129 4.129 7 C -0.123 4.123 8 C -0.058 4.058 9 C -0.133 4.133 10 C 0.494 3.506 11 O -0.614 6.614 12 N -0.477 5.477 13 C -0.316 4.316 14 H 0.121 0.879 15 C 0.040 3.960 16 N -0.891 5.891 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.108 3.892 22 C -0.115 4.115 23 C 0.473 3.527 24 O -0.542 6.542 25 O -0.359 6.359 26 C 0.025 3.975 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.277 0.723 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.116 0.884 45 H 0.125 0.875 46 H 0.062 0.938 47 H 0.139 0.861 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -6.235 3.437 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.101 4.101 4 H 0.079 0.921 5 C -0.143 4.143 6 C -0.166 4.166 7 C -0.161 4.161 8 C -0.061 4.061 9 C -0.190 4.190 10 C 0.285 3.715 11 O -0.500 6.500 12 N -0.198 5.198 13 C -0.444 4.444 14 H 0.138 0.862 15 C -0.164 4.164 16 N -0.529 5.529 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.015 4.015 22 C -0.153 4.153 23 C 0.317 3.683 24 O -0.432 6.432 25 O -0.275 6.275 26 C -0.067 4.067 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.143 0.857 46 H 0.080 0.920 47 H 0.157 0.843 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.300 -5.657 3.807 9.989 hybrid contribution 0.669 1.673 0.695 1.931 sum -6.630 -3.984 4.502 8.950 Atomic orbital electron populations 1.21776 0.95260 1.01911 1.01583 1.21678 0.96119 0.94760 1.02160 1.21813 0.92067 0.97683 0.98501 0.92083 1.22385 0.96992 0.98337 0.96568 1.22526 0.95737 0.97557 1.00805 1.22764 0.98993 0.99584 0.94721 1.21075 0.96328 0.96072 0.92611 1.22014 1.01180 0.93100 1.02711 1.21078 0.80968 0.81194 0.88247 1.90496 1.52621 1.58731 1.48129 1.43812 1.06671 1.55439 1.13878 1.19306 1.06434 1.05402 1.13209 0.86161 1.25564 0.95701 0.98984 0.96138 1.69666 1.09305 1.36383 1.37556 0.86560 0.78459 0.83978 0.77559 1.20308 1.21435 1.20390 1.21368 0.99389 0.94775 0.85998 1.21636 1.05161 1.00091 0.88415 1.23823 0.72784 0.85908 0.85777 1.90638 1.50457 1.17382 1.84738 1.86506 1.77491 1.41740 1.21742 1.23616 1.00034 0.99122 0.83970 0.91645 0.94013 0.92052 0.90483 0.92511 0.91781 0.89600 0.94568 0.90208 0.90459 0.89992 0.92490 0.92322 0.89839 0.91246 0.91965 0.92417 0.86616 0.85692 0.91958 0.84268 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.75 71.98 0.70 -2.43 16 2 C -0.11 -2.74 4.11 30.59 0.13 -2.61 16 3 C -0.08 -2.58 2.52 -10.07 -0.03 -2.61 16 4 H 0.06 2.32 6.45 -2.38 -0.02 2.30 16 5 C -0.11 -2.89 5.46 31.67 0.17 -2.71 16 6 C -0.13 -4.13 6.91 31.88 0.22 -3.91 16 7 C -0.12 -4.48 4.87 31.67 0.15 -4.33 16 8 C -0.06 -2.10 0.61 -52.20 -0.03 -2.13 16 9 C -0.13 -4.21 7.01 71.98 0.50 -3.70 16 10 C 0.49 21.92 6.44 87.66 0.56 22.49 16 11 O -0.61 -29.98 14.91 -3.09 -0.05 -30.02 16 12 N -0.48 -21.91 2.22 -635.53 -1.41 -23.32 16 13 C -0.32 -15.10 6.11 84.04 0.51 -14.59 16 14 H 0.12 5.77 4.75 -2.91 -0.01 5.76 16 15 C 0.04 2.04 5.30 84.93 0.45 2.49 16 16 N -0.89 -47.00 13.96 21.66 0.30 -46.69 16 17 Si 0.90 43.73 24.66 68.60 1.69 45.42 16 18 H -0.28 -13.48 6.63 99.48 0.66 -12.82 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 20 H -0.28 -14.08 7.03 99.48 0.70 -13.38 16 21 C 0.11 4.91 3.13 86.38 0.27 5.18 16 22 C -0.11 -4.28 6.09 29.85 0.18 -4.10 16 23 C 0.47 17.28 7.96 71.24 0.57 17.85 16 24 O -0.54 -22.96 15.73 21.97 0.35 -22.62 16 25 O -0.36 -10.71 10.56 -51.40 -0.54 -11.25 16 26 C 0.03 0.55 10.56 113.37 1.20 1.75 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 1.19 7.46 -2.39 -0.02 1.17 16 30 H 0.08 1.68 6.96 -2.39 -0.02 1.67 16 31 H 0.06 1.49 6.43 -2.39 -0.02 1.47 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.95 7.79 -2.39 -0.02 1.93 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.08 2.55 7.79 -2.39 -0.02 2.53 16 37 H 0.08 3.62 4.91 -2.39 -0.01 3.61 16 38 H 0.06 2.03 5.46 -2.38 -0.01 2.01 16 39 H 0.06 1.75 6.44 -2.38 -0.02 1.73 16 40 H 0.08 2.19 6.95 -2.39 -0.02 2.17 16 41 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.06 3.01 2.91 -2.38 -0.01 3.01 16 43 H 0.06 2.80 7.49 -2.39 -0.02 2.78 16 44 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 45 H 0.13 4.38 8.14 -2.39 -0.02 4.36 16 46 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 47 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 Total: -1.00 -62.27 361.13 6.81 -55.46 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.90 Total: 26.39 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.57 Total: 6.63 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -1.11 Total: -70.02 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -0.24 Total: -63.89 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.69 Total: 45.42 kcal Total: -62.27 6.81 -55.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893166702.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.252 kcal (2) G-P(sol) polarization free energy of solvation -62.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds