Wall clock time and date at job start Fri Apr 10 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47277 * 2 1 4 4 H 1.09005 * 110.02045 * 304.80980 * 3 2 1 5 5 C 1.54271 * 110.03475 * 66.20295 * 3 2 1 6 6 C 1.54885 * 104.19614 * 142.89632 * 5 3 2 7 7 C 1.54884 * 102.74915 * 322.05467 * 6 5 3 8 8 C 1.53877 * 110.03456 * 183.36743 * 3 2 1 9 9 C 1.53004 * 110.03314 * 121.42974 * 8 3 2 10 10 C 1.50696 * 110.02908 * 0.02562 * 8 3 2 11 11 O 1.21296 * 120.00299 * 83.91042 * 10 8 3 12 12 N 1.34777 * 120.00038 * 263.90467 * 10 8 3 13 13 C 1.37104 * 120.00079 * 233.51920 * 12 10 8 14 14 H 1.08001 * 119.99463 * 196.73153 * 13 12 10 15 15 C 1.38947 * 119.99714 * 16.73727 * 13 12 10 16 16 N 1.31406 * 120.00444 * 11.74801 * 15 13 12 17 17 Si 1.86804 * 119.99645 * 191.74614 * 15 13 12 18 18 H 1.48505 * 109.46872 * 89.99880 * 17 15 13 19 19 H 1.48500 * 109.47094 * 210.00071 * 17 15 13 20 20 H 1.48498 * 109.47214 * 330.00420 * 17 15 13 21 21 C 1.46504 * 119.99864 * 53.52272 * 12 10 8 22 22 C 1.52997 * 109.47263 * 95.38062 * 21 12 10 23 23 C 1.50695 * 109.47089 * 185.18283 * 22 21 12 24 24 O 1.20826 * 119.99957 * 0.02562 * 23 22 21 25 25 O 1.34228 * 120.00116 * 180.02562 * 23 22 21 26 26 C 1.45195 * 117.00261 * 180.02562 * 25 23 22 27 27 H 1.09007 * 109.46931 * 59.99699 * 1 2 3 28 28 H 1.08993 * 109.47687 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46985 * 300.00417 * 1 2 3 30 30 H 1.09000 * 109.47054 * 240.00136 * 2 1 3 31 31 H 1.08999 * 109.47143 * 120.00012 * 2 1 3 32 32 H 1.08997 * 110.48232 * 261.57452 * 5 3 2 33 33 H 1.09000 * 110.48054 * 24.21311 * 5 3 2 34 34 H 1.08994 * 110.76181 * 80.37523 * 6 5 3 35 35 H 1.09005 * 110.75136 * 203.74329 * 6 5 3 36 36 H 1.09001 * 110.48843 * 156.62678 * 7 6 5 37 37 H 1.09001 * 110.49081 * 279.27049 * 7 6 5 38 38 H 1.08993 * 109.47055 * 64.85585 * 9 8 3 39 39 H 1.08995 * 109.47036 * 184.86315 * 9 8 3 40 40 H 1.09001 * 109.46591 * 304.86041 * 9 8 3 41 41 H 0.97000 * 120.00341 * 184.98834 * 16 15 13 42 42 H 1.08995 * 109.46756 * 215.38118 * 21 12 10 43 43 H 1.08999 * 109.47010 * 335.37980 * 21 12 10 44 44 H 1.09002 * 109.47068 * 305.18642 * 22 21 12 45 45 H 1.09005 * 109.46950 * 65.18175 * 22 21 12 46 46 H 1.09000 * 109.47514 * 300.00283 * 26 25 23 47 47 H 1.09004 * 109.47191 * 59.99614 * 26 25 23 48 48 H 1.09007 * 109.47458 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6132 1.9892 -0.8409 5 6 1.6648 2.1357 1.3261 6 6 2.8850 3.0356 1.6428 7 6 4.0810 2.1606 1.1925 8 6 3.5763 1.4584 -0.0849 9 6 4.0248 2.2372 -1.3232 10 6 4.1047 0.0482 -0.1425 11 8 4.1553 -0.5376 -1.2034 12 7 4.5211 -0.5619 0.9848 13 6 5.7747 -1.1143 1.0423 14 1 6.0162 -1.8255 1.8184 15 6 6.7342 -0.7589 0.1024 16 7 6.5260 0.2652 -0.6943 17 14 8.3204 -1.7369 -0.0288 18 1 8.1390 -2.8463 -0.9991 19 1 9.4140 -0.8464 -0.4937 20 1 8.6689 -2.2955 1.3023 21 6 3.6342 -0.6351 2.1485 22 6 2.8939 -1.9740 2.1422 23 6 1.8897 -1.9981 3.2656 24 8 1.7773 -1.0422 3.9960 25 8 1.1201 -3.0814 3.4548 26 6 0.1745 -3.0342 4.5556 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7671 2.7408 1.1995 33 1 1.5203 1.3974 2.1149 34 1 2.8436 3.9596 1.0661 35 1 2.9418 3.2476 2.7105 36 1 4.9467 2.7839 0.9685 37 1 4.3268 1.4264 1.9597 38 1 3.7334 3.2824 -1.2202 39 1 5.1082 2.1699 -1.4221 40 1 3.5521 1.8139 -2.2095 41 1 7.1617 0.4694 -1.3980 42 1 4.2245 -0.5506 3.0609 43 1 2.9116 0.1798 2.1065 44 1 2.3775 -2.0992 1.1905 45 1 3.6093 -2.7854 2.2769 46 1 0.7138 -2.8910 5.4920 47 1 -0.5177 -2.2058 4.4048 48 1 -0.3828 -3.9702 4.5964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893166705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:01 Heat of formation + Delta-G solvation = -108.336670 kcal Electronic energy + Delta-G solvation = -29370.483820 eV Core-core repulsion = 25619.324879 eV Total energy + Delta-G solvation = -3751.158940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50928 -39.84293 -36.69294 -36.38113 -34.66050 -33.05795 -32.11896 -30.36487 -30.10098 -27.56784 -27.07954 -25.66123 -24.43145 -23.46042 -21.88453 -20.91344 -20.26031 -19.79490 -18.08139 -17.48036 -16.66599 -16.35528 -16.09269 -15.29505 -15.10240 -14.76171 -14.23479 -13.99200 -13.96512 -13.63273 -13.25099 -13.09691 -12.95158 -12.49203 -12.38298 -12.26186 -12.01463 -11.83567 -11.59351 -11.31290 -11.20710 -10.98072 -10.90334 -10.73370 -10.71110 -10.61431 -10.52105 -10.42262 -10.39589 -10.25876 -10.14022 -9.94347 -9.70977 -9.66640 -9.57935 -9.03565 -8.03979 -7.25378 -6.09101 -3.57602 2.43175 2.87997 3.31776 3.38229 3.39774 4.06473 4.35869 4.88785 5.07474 5.09983 5.15841 5.16426 5.17635 5.28241 5.33168 5.48936 5.49688 5.57577 5.64750 5.72939 5.74035 5.94344 6.00533 6.05836 6.08204 6.09655 6.18825 6.20488 6.28905 6.35712 6.39447 6.41335 6.49664 6.51976 6.59199 6.68458 6.76580 6.80599 6.83563 6.98900 7.02443 7.18599 7.36554 7.59039 7.94500 8.17124 9.09805 9.39813 9.67782 10.17760 11.03071 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.006922 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.294149 B = 4043.920888 C = 5480.478804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C -0.078 4.078 4 H 0.069 0.931 5 C -0.121 4.121 6 C -0.127 4.127 7 C -0.110 4.110 8 C -0.073 4.073 9 C -0.116 4.116 10 C 0.587 3.413 11 O -0.524 6.524 12 N -0.533 5.533 13 C -0.302 4.302 14 H 0.082 0.918 15 C 0.029 3.971 16 N -0.868 5.868 17 Si 0.917 3.083 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.129 3.871 22 C -0.142 4.142 23 C 0.465 3.535 24 O -0.509 6.509 25 O -0.363 6.363 26 C 0.035 3.965 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 0.463 6.357 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.190 4.190 3 C -0.097 4.097 4 H 0.087 0.913 5 C -0.158 4.158 6 C -0.165 4.165 7 C -0.147 4.147 8 C -0.077 4.077 9 C -0.173 4.173 10 C 0.377 3.623 11 O -0.397 6.397 12 N -0.261 5.261 13 C -0.428 4.428 14 H 0.100 0.900 15 C -0.174 4.174 16 N -0.509 5.509 17 Si 0.745 3.255 18 H -0.210 1.210 19 H -0.214 1.214 20 H -0.202 1.202 21 C 0.003 3.997 22 C -0.181 4.181 23 C 0.308 3.692 24 O -0.397 6.397 25 O -0.280 6.280 26 C -0.059 4.059 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.929 0.569 5.878 12.422 hybrid contribution 0.761 -0.446 0.043 0.883 sum -10.167 0.123 5.921 11.766 Atomic orbital electron populations 1.21758 0.96563 1.00867 1.01204 1.22326 0.95352 0.97276 1.04083 1.21855 0.94629 0.95668 0.97516 0.91277 1.22503 0.97524 0.98478 0.97301 1.22536 0.95717 0.98100 1.00101 1.22553 0.96565 0.98555 0.97072 1.21401 0.93344 0.96128 0.96840 1.21611 1.03686 0.96402 0.95624 1.19030 0.74281 0.85857 0.83093 1.90392 1.50456 1.66619 1.32275 1.42831 1.13771 1.59734 1.09730 1.19219 0.85334 1.22620 1.15660 0.89989 1.24918 0.98360 0.95882 0.98227 1.69409 1.38083 1.24389 1.19027 0.86091 0.81830 0.79480 0.78102 1.20967 1.21438 1.20189 1.21141 0.93852 0.93305 0.91388 1.22338 0.96029 1.04575 0.95193 1.24126 0.79965 0.79838 0.85229 1.90634 1.67127 1.35673 1.46256 1.86557 1.48557 1.42344 1.50547 1.23198 0.91373 1.03137 0.88236 0.93135 0.93374 0.93121 0.90567 0.90342 0.92424 0.91335 0.92231 0.92159 0.91842 0.89768 0.94498 0.90176 0.93489 0.92300 0.91568 0.89906 0.87465 0.87294 0.92084 0.92089 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.75 37.16 0.36 -1.71 16 2 C -0.15 -2.67 3.85 -26.74 -0.10 -2.78 16 3 C -0.08 -1.35 2.37 -89.50 -0.21 -1.56 16 4 H 0.07 1.15 7.67 -51.93 -0.40 0.75 16 5 C -0.12 -1.84 4.89 -25.07 -0.12 -1.97 16 6 C -0.13 -1.97 6.91 -24.74 -0.17 -2.14 16 7 C -0.11 -2.12 5.28 -25.08 -0.13 -2.25 16 8 C -0.07 -1.49 0.67 -154.54 -0.10 -1.59 16 9 C -0.12 -2.37 7.75 37.16 0.29 -2.09 16 10 C 0.59 14.14 1.61 -10.99 -0.02 14.13 16 11 O -0.52 -14.62 14.70 5.54 0.08 -14.54 16 12 N -0.53 -12.54 1.83 -114.81 -0.21 -12.75 16 13 C -0.30 -7.81 9.62 -14.93 -0.14 -7.95 16 14 H 0.08 2.02 7.86 -52.49 -0.41 1.61 16 15 C 0.03 0.79 5.06 -17.47 -0.09 0.70 16 16 N -0.87 -24.03 9.44 55.50 0.52 -23.51 16 17 Si 0.92 21.32 29.57 -169.99 -5.03 16.30 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.13 2.52 2.48 -4.04 -0.01 2.51 16 22 C -0.14 -2.44 5.26 -27.89 -0.15 -2.58 16 23 C 0.47 7.42 7.96 36.00 0.29 7.71 16 24 O -0.51 -8.90 15.66 -18.75 -0.29 -9.20 16 25 O -0.36 -5.11 10.56 -39.25 -0.41 -5.52 16 26 C 0.03 0.36 10.56 101.05 1.07 1.42 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.67 7.45 -51.93 -0.39 0.28 16 30 H 0.08 1.54 6.57 -51.93 -0.34 1.20 16 31 H 0.08 1.40 2.04 -51.93 -0.11 1.29 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.09 6.37 -51.93 -0.33 0.76 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.28 7.84 -51.93 -0.41 0.87 16 37 H 0.08 1.74 4.77 -51.93 -0.25 1.50 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.86 7.00 -51.93 -0.36 1.49 16 40 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.27 7.24 8.32 -40.82 -0.34 6.90 16 42 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 43 H 0.08 1.56 2.40 -51.93 -0.12 1.43 16 44 H 0.11 1.88 6.52 -51.93 -0.34 1.54 16 45 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 46 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 47 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -30.59 359.48 -6.83 -37.42 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.66 Total: 6.54 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 0.75 Total: -0.16 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.31 Total: -36.26 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.63 Total: -29.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.59 -6.83 -37.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893166705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.920 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds