Wall clock time and date at job start Fri Apr 10 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47277 * 2 1 4 4 H 1.09005 * 110.02045 * 304.80980 * 3 2 1 5 5 C 1.54271 * 110.03475 * 66.20295 * 3 2 1 6 6 C 1.54885 * 104.19614 * 142.89632 * 5 3 2 7 7 C 1.54884 * 102.74915 * 322.05467 * 6 5 3 8 8 C 1.53877 * 110.03456 * 183.36743 * 3 2 1 9 9 C 1.53004 * 110.03314 * 121.42974 * 8 3 2 10 10 C 1.50696 * 110.02908 * 0.02562 * 8 3 2 11 11 O 1.21296 * 120.00299 * 83.91042 * 10 8 3 12 12 N 1.34777 * 120.00038 * 263.90467 * 10 8 3 13 13 C 1.37104 * 120.00079 * 233.51920 * 12 10 8 14 14 H 1.08001 * 119.99463 * 196.73153 * 13 12 10 15 15 C 1.38947 * 119.99714 * 16.73727 * 13 12 10 16 16 N 1.31406 * 120.00444 * 11.74801 * 15 13 12 17 17 Si 1.86804 * 119.99645 * 191.74614 * 15 13 12 18 18 H 1.48505 * 109.46872 * 89.99880 * 17 15 13 19 19 H 1.48500 * 109.47094 * 210.00071 * 17 15 13 20 20 H 1.48498 * 109.47214 * 330.00420 * 17 15 13 21 21 C 1.46504 * 119.99864 * 53.52272 * 12 10 8 22 22 C 1.52997 * 109.47263 * 95.38062 * 21 12 10 23 23 C 1.50695 * 109.47089 * 185.18283 * 22 21 12 24 24 O 1.20826 * 119.99957 * 0.02562 * 23 22 21 25 25 O 1.34228 * 120.00116 * 180.02562 * 23 22 21 26 26 C 1.45195 * 117.00261 * 180.02562 * 25 23 22 27 27 H 1.09007 * 109.46931 * 59.99699 * 1 2 3 28 28 H 1.08993 * 109.47687 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46985 * 300.00417 * 1 2 3 30 30 H 1.09000 * 109.47054 * 240.00136 * 2 1 3 31 31 H 1.08999 * 109.47143 * 120.00012 * 2 1 3 32 32 H 1.08997 * 110.48232 * 261.57452 * 5 3 2 33 33 H 1.09000 * 110.48054 * 24.21311 * 5 3 2 34 34 H 1.08994 * 110.76181 * 80.37523 * 6 5 3 35 35 H 1.09005 * 110.75136 * 203.74329 * 6 5 3 36 36 H 1.09001 * 110.48843 * 156.62678 * 7 6 5 37 37 H 1.09001 * 110.49081 * 279.27049 * 7 6 5 38 38 H 1.08993 * 109.47055 * 64.85585 * 9 8 3 39 39 H 1.08995 * 109.47036 * 184.86315 * 9 8 3 40 40 H 1.09001 * 109.46591 * 304.86041 * 9 8 3 41 41 H 0.97000 * 120.00341 * 184.98834 * 16 15 13 42 42 H 1.08995 * 109.46756 * 215.38118 * 21 12 10 43 43 H 1.08999 * 109.47010 * 335.37980 * 21 12 10 44 44 H 1.09002 * 109.47068 * 305.18642 * 22 21 12 45 45 H 1.09005 * 109.46950 * 65.18175 * 22 21 12 46 46 H 1.09000 * 109.47514 * 300.00283 * 26 25 23 47 47 H 1.09004 * 109.47191 * 59.99614 * 26 25 23 48 48 H 1.09007 * 109.47458 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6132 1.9892 -0.8409 5 6 1.6648 2.1357 1.3261 6 6 2.8850 3.0356 1.6428 7 6 4.0810 2.1606 1.1925 8 6 3.5763 1.4584 -0.0849 9 6 4.0248 2.2372 -1.3232 10 6 4.1047 0.0482 -0.1425 11 8 4.1553 -0.5376 -1.2034 12 7 4.5211 -0.5619 0.9848 13 6 5.7747 -1.1143 1.0423 14 1 6.0162 -1.8255 1.8184 15 6 6.7342 -0.7589 0.1024 16 7 6.5260 0.2652 -0.6943 17 14 8.3204 -1.7369 -0.0288 18 1 8.1390 -2.8463 -0.9991 19 1 9.4140 -0.8464 -0.4937 20 1 8.6689 -2.2955 1.3023 21 6 3.6342 -0.6351 2.1485 22 6 2.8939 -1.9740 2.1422 23 6 1.8897 -1.9981 3.2656 24 8 1.7773 -1.0422 3.9960 25 8 1.1201 -3.0814 3.4548 26 6 0.1745 -3.0342 4.5556 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7671 2.7408 1.1995 33 1 1.5203 1.3974 2.1149 34 1 2.8436 3.9596 1.0661 35 1 2.9418 3.2476 2.7105 36 1 4.9467 2.7839 0.9685 37 1 4.3268 1.4264 1.9597 38 1 3.7334 3.2824 -1.2202 39 1 5.1082 2.1699 -1.4221 40 1 3.5521 1.8139 -2.2095 41 1 7.1617 0.4694 -1.3980 42 1 4.2245 -0.5506 3.0609 43 1 2.9116 0.1798 2.1065 44 1 2.3775 -2.0992 1.1905 45 1 3.6093 -2.7854 2.2769 46 1 0.7138 -2.8910 5.4920 47 1 -0.5177 -2.2058 4.4048 48 1 -0.3828 -3.9702 4.5964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893166705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:00 Heat of formation + Delta-G solvation = -124.585469 kcal Electronic energy + Delta-G solvation = -29371.188421 eV Core-core repulsion = 25619.324879 eV Total energy + Delta-G solvation = -3751.863541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.97512 -41.23054 -38.32577 -37.63798 -36.45161 -34.52148 -33.88258 -31.89322 -31.68922 -28.59554 -28.39766 -27.42689 -26.05871 -24.99779 -23.23372 -22.49487 -21.64351 -21.18622 -19.82593 -18.84878 -18.12582 -17.59030 -17.49429 -16.95426 -16.74823 -16.35427 -15.78780 -15.59721 -15.52722 -15.07052 -14.67423 -14.35117 -14.21897 -13.94353 -13.79256 -13.63556 -13.33338 -13.21778 -13.10521 -12.88799 -12.84391 -12.73827 -12.56945 -12.42301 -12.20868 -12.15435 -11.95190 -11.87733 -11.74713 -11.74304 -11.57330 -11.31747 -11.19544 -11.15591 -11.03694 -10.97197 -9.95352 -9.17373 -8.12182 -5.61318 1.15995 1.42330 1.47208 1.53605 1.71393 2.21306 2.49938 3.24459 3.31572 3.76542 3.79197 3.81662 3.90101 4.01768 4.21265 4.27078 4.33688 4.36667 4.38628 4.47382 4.49363 4.55560 4.62995 4.68266 4.74744 4.75160 4.81574 4.84232 4.87358 4.94873 5.04386 5.07681 5.16880 5.20502 5.22869 5.30061 5.32928 5.37317 5.38093 5.48127 5.55359 5.61795 5.65021 5.70874 6.16484 6.72467 7.09514 7.49268 7.79355 8.27176 8.98275 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.006922 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.294149 B = 4043.920888 C = 5480.478804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.152 4.152 3 C -0.075 4.075 4 H 0.080 0.920 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.110 4.110 8 C -0.077 4.077 9 C -0.109 4.109 10 C 0.589 3.411 11 O -0.575 6.575 12 N -0.545 5.545 13 C -0.310 4.310 14 H 0.089 0.911 15 C -0.024 4.024 16 N -0.892 5.892 17 Si 0.975 3.025 18 H -0.294 1.294 19 H -0.290 1.290 20 H -0.259 1.259 21 C 0.132 3.868 22 C -0.137 4.137 23 C 0.477 3.523 24 O -0.524 6.524 25 O -0.366 6.366 26 C 0.026 3.974 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.257 0.743 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 0.899 8.163 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C -0.094 4.094 4 H 0.098 0.902 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.081 4.081 9 C -0.167 4.167 10 C 0.382 3.618 11 O -0.453 6.453 12 N -0.273 5.273 13 C -0.438 4.438 14 H 0.107 0.893 15 C -0.224 4.224 16 N -0.534 5.534 17 Si 0.802 3.198 18 H -0.221 1.221 19 H -0.217 1.217 20 H -0.183 1.183 21 C 0.007 3.993 22 C -0.176 4.176 23 C 0.320 3.680 24 O -0.414 6.414 25 O -0.283 6.283 26 C -0.067 4.067 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.128 0.872 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.137 0.992 7.738 15.279 hybrid contribution 1.399 -0.659 -0.480 1.620 sum -11.738 0.332 7.257 13.804 Atomic orbital electron populations 1.21700 0.93631 1.01806 1.02493 1.22253 0.97907 0.96864 1.01935 1.21867 0.91941 0.96111 0.99490 0.90193 1.22462 0.98604 0.98387 0.95409 1.22507 0.93506 0.97950 1.01393 1.22487 0.97761 0.98505 0.95991 1.21444 0.95830 0.93555 0.97255 1.21529 1.01338 0.98350 0.95444 1.19679 0.72940 0.86871 0.82329 1.90355 1.52939 1.67952 1.34018 1.42975 1.13589 1.59858 1.10834 1.19572 0.86259 1.22426 1.15518 0.89291 1.25724 1.01314 0.96915 0.98469 1.69552 1.38728 1.25623 1.19486 0.85174 0.78537 0.77725 0.78369 1.22078 1.21659 1.18321 1.21205 0.93435 0.94974 0.89665 1.22080 0.96494 1.03118 0.95898 1.23586 0.79831 0.80113 0.84427 1.90627 1.67683 1.36338 1.46705 1.86524 1.48784 1.41062 1.51906 1.23583 0.90788 1.05315 0.86978 0.92076 0.92741 0.91479 0.94247 0.91053 0.89168 0.91829 0.90435 0.90462 0.93636 0.91551 0.91217 0.93534 0.94646 0.93249 0.91905 0.88907 0.88035 0.87220 0.91777 0.91589 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.75 71.98 0.70 -2.89 16 2 C -0.15 -5.21 3.85 30.59 0.12 -5.10 16 3 C -0.08 -2.49 2.37 -10.07 -0.02 -2.52 16 4 H 0.08 2.48 7.67 -2.38 -0.02 2.46 16 5 C -0.11 -3.02 4.89 31.67 0.15 -2.86 16 6 C -0.12 -3.26 6.91 31.88 0.22 -3.04 16 7 C -0.11 -4.19 5.28 31.67 0.17 -4.02 16 8 C -0.08 -3.16 0.67 -52.20 -0.04 -3.19 16 9 C -0.11 -4.55 7.75 71.98 0.56 -4.00 16 10 C 0.59 29.30 1.61 87.66 0.14 29.44 16 11 O -0.58 -33.72 14.70 -3.08 -0.05 -33.76 16 12 N -0.55 -26.31 1.83 -635.54 -1.16 -27.47 16 13 C -0.31 -16.45 9.62 84.04 0.81 -15.64 16 14 H 0.09 4.45 7.86 -2.91 -0.02 4.43 16 15 C -0.02 -1.33 5.06 84.93 0.43 -0.90 16 16 N -0.89 -51.52 9.44 21.66 0.20 -51.31 16 17 Si 0.97 44.93 29.57 68.60 2.03 46.95 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 21 C 0.13 5.16 2.48 86.38 0.21 5.37 16 22 C -0.14 -4.67 5.26 29.85 0.16 -4.51 16 23 C 0.48 14.53 7.96 71.23 0.57 15.10 16 24 O -0.52 -17.39 15.66 21.96 0.34 -17.04 16 25 O -0.37 -9.52 10.56 -51.39 -0.54 -10.06 16 26 C 0.03 0.46 10.56 113.37 1.20 1.66 16 27 H 0.06 1.44 8.14 -2.38 -0.02 1.43 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.52 7.45 -2.39 -0.02 1.50 16 30 H 0.04 1.63 6.57 -2.39 -0.02 1.61 16 31 H 0.07 2.51 2.04 -2.39 0.00 2.51 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.82 6.37 -2.39 -0.02 1.80 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.04 1.86 7.84 -2.39 -0.02 1.84 16 37 H 0.07 2.76 4.77 -2.39 -0.01 2.75 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 2.24 7.00 -2.39 -0.02 2.22 16 40 H 0.03 1.51 8.08 -2.39 -0.02 1.49 16 41 H 0.26 14.74 8.32 -92.71 -0.77 13.97 16 42 H 0.06 2.47 8.08 -2.39 -0.02 2.45 16 43 H 0.09 3.43 2.40 -2.39 -0.01 3.43 16 44 H 0.10 3.61 6.52 -2.39 -0.02 3.59 16 45 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 46 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 47 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 48 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -69.00 359.48 7.15 -61.84 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.95 Total: 27.96 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.37 Total: 2.90 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -0.96 Total: -78.79 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -0.24 Total: -60.87 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.00 7.15 -61.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893166705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.744 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds