Wall clock time and date at job start Fri Apr 10 2020 22:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46882 * 2 1 4 4 H 1.08999 * 110.05760 * 306.41307 * 3 2 1 5 5 C 1.54265 * 110.02984 * 67.83258 * 3 2 1 6 6 C 1.54893 * 104.19373 * 142.89369 * 5 3 2 7 7 C 1.54886 * 102.74862 * 322.05424 * 6 5 3 8 8 C 1.53873 * 110.02942 * 185.00034 * 3 2 1 9 9 C 1.53000 * 110.07461 * 0.02562 * 8 3 2 10 10 C 1.50698 * 110.03184 * 121.43278 * 8 3 2 11 11 O 1.21287 * 120.00418 * 359.63013 * 10 8 3 12 12 N 1.34777 * 119.99633 * 179.62913 * 10 8 3 13 13 C 1.37097 * 120.00277 * 4.98726 * 12 10 8 14 14 H 1.07997 * 119.99834 * 323.03233 * 13 12 10 15 15 C 1.38953 * 120.00075 * 143.03650 * 13 12 10 16 16 N 1.31402 * 120.00309 * 339.16647 * 15 13 12 17 17 Si 1.86801 * 119.99583 * 159.16409 * 15 13 12 18 18 H 1.48498 * 109.47671 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46837 * 120.00132 * 17 15 13 20 20 H 1.48500 * 109.47370 * 239.99768 * 17 15 13 21 21 C 1.46497 * 119.99828 * 184.98175 * 12 10 8 22 22 C 1.52997 * 109.47494 * 84.48343 * 21 12 10 23 23 C 1.50698 * 109.47677 * 179.97438 * 22 21 12 24 24 O 1.20822 * 119.99564 * 0.02562 * 23 22 21 25 25 O 1.34226 * 120.00050 * 179.97438 * 23 22 21 26 26 C 1.45199 * 116.99979 * 179.97438 * 25 23 22 27 27 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47373 * 300.00122 * 1 2 3 29 29 H 1.09006 * 109.47017 * 60.00310 * 1 2 3 30 30 H 1.09000 * 109.47209 * 240.00346 * 2 1 3 31 31 H 1.08996 * 109.46815 * 120.00162 * 2 1 3 32 32 H 1.09000 * 110.49000 * 24.21427 * 5 3 2 33 33 H 1.09003 * 110.48661 * 261.56936 * 5 3 2 34 34 H 1.09003 * 110.75568 * 203.73805 * 6 5 3 35 35 H 1.09003 * 110.75345 * 80.37235 * 6 5 3 36 36 H 1.08997 * 110.48779 * 279.26427 * 7 6 5 37 37 H 1.08999 * 110.59809 * 156.67462 * 7 6 5 38 38 H 1.09003 * 109.46981 * 188.23302 * 9 8 3 39 39 H 1.09007 * 109.46816 * 308.23290 * 9 8 3 40 40 H 1.08992 * 109.46896 * 68.23294 * 9 8 3 41 41 H 0.96994 * 120.00509 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.47111 * 324.48162 * 21 12 10 43 43 H 1.09008 * 109.47183 * 204.48293 * 21 12 10 44 44 H 1.09001 * 109.47089 * 59.99806 * 22 21 12 45 45 H 1.09008 * 109.46865 * 300.00145 * 22 21 12 46 46 H 1.08997 * 109.46875 * 60.00391 * 26 25 23 47 47 H 1.08999 * 109.47635 * 180.02562 * 26 25 23 48 48 H 1.08997 * 109.47093 * 300.00734 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9975 -0.8240 5 6 1.7005 2.1230 1.3422 6 6 2.9289 3.0201 1.6346 7 6 4.1124 2.1496 1.1442 8 6 3.5735 1.4594 -0.1260 9 6 4.1091 0.0288 -0.2126 10 6 3.9823 2.2382 -1.3497 11 8 3.1364 2.7315 -2.0653 12 7 5.2881 2.3864 -1.6489 13 6 6.2402 1.7446 -0.8998 14 1 6.1073 1.6389 0.1667 15 6 7.3762 1.2303 -1.5128 16 7 7.3715 0.9827 -2.8033 17 14 8.9101 0.8908 -0.5022 18 1 8.6585 1.2517 0.9161 19 1 9.2529 -0.5514 -0.5921 20 1 10.0382 1.7013 -1.0271 21 6 5.6900 3.2333 -2.7747 22 6 5.7694 4.6901 -2.3141 23 6 6.1834 5.5613 -3.4720 24 8 6.3930 5.0676 -4.5547 25 8 6.3184 6.8857 -3.3008 26 6 6.7205 7.6626 -4.4597 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5771 1.3772 2.1276 33 1 0.7997 2.7291 1.2456 34 1 3.0143 3.2220 2.7024 35 1 2.8720 3.9495 1.0680 36 1 4.3785 1.4082 1.8975 37 1 4.9732 2.7734 0.9033 38 1 5.1974 0.0442 -0.1542 39 1 3.7091 -0.5594 0.6134 40 1 3.8022 -0.4173 -1.1584 41 1 8.1643 0.6233 -3.2311 42 1 4.9562 3.1450 -3.5759 43 1 6.6663 2.9138 -3.1393 44 1 6.5031 4.7785 -1.5129 45 1 4.7930 5.0096 -1.9495 46 1 5.9809 7.5435 -5.2514 47 1 6.7925 8.7149 -4.1846 48 1 7.6904 7.3126 -4.8130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893166709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:03 Heat of formation + Delta-G solvation = -133.564169 kcal Electronic energy + Delta-G solvation = -28117.700720 eV Core-core repulsion = 24365.447834 eV Total energy + Delta-G solvation = -3752.252887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14530 -39.81161 -37.20516 -36.12078 -34.91811 -32.80683 -32.02741 -31.40522 -29.97501 -27.52129 -27.09407 -25.18195 -24.57029 -23.72086 -22.34229 -20.77228 -20.28154 -19.22175 -18.07135 -17.37559 -16.79862 -16.23054 -16.15253 -15.36678 -14.95282 -14.73210 -14.51728 -14.17071 -13.80377 -13.58546 -13.37553 -13.02299 -12.99152 -12.70847 -12.64536 -12.23404 -12.00832 -11.96172 -11.66891 -11.60443 -11.35649 -11.10336 -11.01056 -10.94256 -10.69325 -10.54929 -10.53253 -10.35642 -10.24213 -10.13718 -10.05472 -9.94806 -9.88241 -9.74295 -9.61872 -9.04212 -8.30063 -7.54585 -6.38998 -4.07058 2.66583 3.04508 3.08807 3.20609 3.22291 3.89253 4.09972 4.68810 4.92416 5.08047 5.15028 5.22037 5.25109 5.30210 5.37192 5.53408 5.59212 5.63628 5.69765 5.80307 5.86616 5.94579 6.00828 6.07391 6.11069 6.14374 6.22404 6.26317 6.27350 6.29216 6.39837 6.43603 6.57373 6.59916 6.66137 6.67963 6.72509 6.80560 6.97332 6.99691 7.10486 7.31133 7.34099 7.46707 7.90727 8.17885 8.33800 9.05185 9.49504 9.91883 10.63306 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.005504 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.440116 B = 5086.212460 C = 6584.367016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.084 4.084 4 H 0.093 0.907 5 C -0.114 4.114 6 C -0.126 4.126 7 C -0.111 4.111 8 C -0.056 4.056 9 C -0.141 4.141 10 C 0.487 3.513 11 O -0.600 6.600 12 N -0.439 5.439 13 C -0.344 4.344 14 H 0.103 0.897 15 C 0.043 3.957 16 N -0.852 5.852 17 Si 0.904 3.096 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.130 3.870 22 C -0.125 4.125 23 C 0.466 3.534 24 O -0.505 6.505 25 O -0.367 6.367 26 C 0.035 3.965 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.269 0.731 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 4.452 6.279 8.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.111 0.889 5 C -0.151 4.151 6 C -0.164 4.164 7 C -0.149 4.149 8 C -0.059 4.059 9 C -0.198 4.198 10 C 0.276 3.724 11 O -0.486 6.486 12 N -0.156 5.156 13 C -0.471 4.471 14 H 0.121 0.879 15 C -0.164 4.164 16 N -0.487 5.487 17 Si 0.731 3.269 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.006 3.994 22 C -0.164 4.164 23 C 0.309 3.691 24 O -0.391 6.391 25 O -0.284 6.284 26 C -0.059 4.059 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.131 0.869 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.078 0.922 47 H 0.114 0.886 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.015 4.477 5.398 8.081 hybrid contribution 1.015 -0.118 0.138 1.031 sum -3.000 4.358 5.536 7.658 Atomic orbital electron populations 1.21810 0.96858 1.00656 1.01503 1.21717 0.94658 0.96994 1.01799 1.21847 0.94363 0.95802 0.98296 0.88890 1.22394 0.97474 0.98151 0.97098 1.22503 0.95530 0.98564 0.99766 1.22501 0.98033 0.98680 0.95675 1.20947 0.94516 0.96520 0.93880 1.22105 1.04355 0.93246 1.00108 1.20371 0.82769 0.82043 0.87200 1.90485 1.51006 1.53991 1.53105 1.43294 1.03949 1.40041 1.28342 1.19633 0.99763 1.35483 0.92250 0.87934 1.25376 0.99937 0.95376 0.95695 1.69954 1.29277 1.39189 1.10305 0.86230 0.82122 0.78208 0.80368 1.18997 1.20699 1.20575 1.21097 1.04476 0.84380 0.89464 1.21930 1.03585 0.95945 0.94925 1.24089 0.73378 0.80900 0.90766 1.90652 1.46206 1.74345 1.27934 1.86539 1.80075 1.21308 1.40489 1.23163 1.00432 0.94788 0.87517 0.93519 0.93109 0.92953 0.91740 0.92228 0.92217 0.92548 0.92312 0.91869 0.91648 0.90050 0.88900 0.93674 0.93402 0.92013 0.91918 0.86924 0.87855 0.88532 0.92186 0.88633 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.77 37.16 0.36 -1.59 16 2 C -0.11 -1.72 4.07 -26.73 -0.11 -1.83 16 3 C -0.08 -1.45 2.53 -89.50 -0.23 -1.67 16 4 H 0.09 1.86 6.39 -51.93 -0.33 1.53 16 5 C -0.11 -1.65 5.53 -25.07 -0.14 -1.79 16 6 C -0.13 -1.88 6.91 -24.74 -0.17 -2.06 16 7 C -0.11 -1.88 4.65 -25.07 -0.12 -1.99 16 8 C -0.06 -1.06 0.61 -154.54 -0.09 -1.15 16 9 C -0.14 -2.65 6.72 37.16 0.25 -2.40 16 10 C 0.49 11.26 6.38 -10.99 -0.07 11.19 16 11 O -0.60 -15.37 14.85 5.55 0.08 -15.29 16 12 N -0.44 -10.34 2.49 -114.81 -0.29 -10.63 16 13 C -0.34 -7.95 5.87 -14.93 -0.09 -8.04 16 14 H 0.10 2.23 4.48 -52.49 -0.24 2.00 16 15 C 0.04 1.03 4.92 -17.47 -0.09 0.94 16 16 N -0.85 -22.02 11.47 55.50 0.64 -21.38 16 17 Si 0.90 18.56 29.60 -169.99 -5.03 13.53 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 C 0.13 3.08 4.22 -4.05 -0.02 3.07 16 22 C -0.12 -2.47 6.10 -27.89 -0.17 -2.64 16 23 C 0.47 9.00 7.96 36.00 0.29 9.29 16 24 O -0.50 -11.09 15.73 -18.75 -0.29 -11.38 16 25 O -0.37 -6.02 10.57 -39.25 -0.41 -6.44 16 26 C 0.04 0.44 10.56 101.05 1.07 1.51 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.60 7.51 -51.93 -0.39 0.21 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.05 6.66 -51.93 -0.35 0.71 16 31 H 0.06 0.83 6.74 -51.93 -0.35 0.48 16 32 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 37 H 0.08 1.49 6.01 -51.93 -0.31 1.18 16 38 H 0.09 1.90 5.12 -51.93 -0.27 1.63 16 39 H 0.04 0.72 6.36 -51.93 -0.33 0.39 16 40 H 0.05 0.96 7.13 -51.93 -0.37 0.59 16 41 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.06 1.62 7.48 -51.93 -0.39 1.24 16 43 H 0.11 2.91 5.49 -51.92 -0.29 2.62 16 44 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 45 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 46 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -28.57 367.51 -6.87 -35.44 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.78 Total: 9.77 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 0.68 Total: 0.84 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.35 Total: -32.01 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.63 Total: -33.11 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.57 -6.87 -35.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893166709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.122 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds