Wall clock time and date at job start Fri Apr 10 2020 22:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46882 * 2 1 4 4 H 1.08999 * 110.05760 * 306.41307 * 3 2 1 5 5 C 1.54265 * 110.02984 * 67.83258 * 3 2 1 6 6 C 1.54893 * 104.19373 * 142.89369 * 5 3 2 7 7 C 1.54886 * 102.74862 * 322.05424 * 6 5 3 8 8 C 1.53873 * 110.02942 * 185.00034 * 3 2 1 9 9 C 1.53000 * 110.07461 * 0.02562 * 8 3 2 10 10 C 1.50698 * 110.03184 * 121.43278 * 8 3 2 11 11 O 1.21287 * 120.00418 * 359.63013 * 10 8 3 12 12 N 1.34777 * 119.99633 * 179.62913 * 10 8 3 13 13 C 1.37097 * 120.00277 * 4.98726 * 12 10 8 14 14 H 1.07997 * 119.99834 * 323.03233 * 13 12 10 15 15 C 1.38953 * 120.00075 * 143.03650 * 13 12 10 16 16 N 1.31402 * 120.00309 * 339.16647 * 15 13 12 17 17 Si 1.86801 * 119.99583 * 159.16409 * 15 13 12 18 18 H 1.48498 * 109.47671 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46837 * 120.00132 * 17 15 13 20 20 H 1.48500 * 109.47370 * 239.99768 * 17 15 13 21 21 C 1.46497 * 119.99828 * 184.98175 * 12 10 8 22 22 C 1.52997 * 109.47494 * 84.48343 * 21 12 10 23 23 C 1.50698 * 109.47677 * 179.97438 * 22 21 12 24 24 O 1.20822 * 119.99564 * 0.02562 * 23 22 21 25 25 O 1.34226 * 120.00050 * 179.97438 * 23 22 21 26 26 C 1.45199 * 116.99979 * 179.97438 * 25 23 22 27 27 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47373 * 300.00122 * 1 2 3 29 29 H 1.09006 * 109.47017 * 60.00310 * 1 2 3 30 30 H 1.09000 * 109.47209 * 240.00346 * 2 1 3 31 31 H 1.08996 * 109.46815 * 120.00162 * 2 1 3 32 32 H 1.09000 * 110.49000 * 24.21427 * 5 3 2 33 33 H 1.09003 * 110.48661 * 261.56936 * 5 3 2 34 34 H 1.09003 * 110.75568 * 203.73805 * 6 5 3 35 35 H 1.09003 * 110.75345 * 80.37235 * 6 5 3 36 36 H 1.08997 * 110.48779 * 279.26427 * 7 6 5 37 37 H 1.08999 * 110.59809 * 156.67462 * 7 6 5 38 38 H 1.09003 * 109.46981 * 188.23302 * 9 8 3 39 39 H 1.09007 * 109.46816 * 308.23290 * 9 8 3 40 40 H 1.08992 * 109.46896 * 68.23294 * 9 8 3 41 41 H 0.96994 * 120.00509 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.47111 * 324.48162 * 21 12 10 43 43 H 1.09008 * 109.47183 * 204.48293 * 21 12 10 44 44 H 1.09001 * 109.47089 * 59.99806 * 22 21 12 45 45 H 1.09008 * 109.46865 * 300.00145 * 22 21 12 46 46 H 1.08997 * 109.46875 * 60.00391 * 26 25 23 47 47 H 1.08999 * 109.47635 * 180.02562 * 26 25 23 48 48 H 1.08997 * 109.47093 * 300.00734 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9975 -0.8240 5 6 1.7005 2.1230 1.3422 6 6 2.9289 3.0201 1.6346 7 6 4.1124 2.1496 1.1442 8 6 3.5735 1.4594 -0.1260 9 6 4.1091 0.0288 -0.2126 10 6 3.9823 2.2382 -1.3497 11 8 3.1364 2.7315 -2.0653 12 7 5.2881 2.3864 -1.6489 13 6 6.2402 1.7446 -0.8998 14 1 6.1073 1.6389 0.1667 15 6 7.3762 1.2303 -1.5128 16 7 7.3715 0.9827 -2.8033 17 14 8.9101 0.8908 -0.5022 18 1 8.6585 1.2517 0.9161 19 1 9.2529 -0.5514 -0.5921 20 1 10.0382 1.7013 -1.0271 21 6 5.6900 3.2333 -2.7747 22 6 5.7694 4.6901 -2.3141 23 6 6.1834 5.5613 -3.4720 24 8 6.3930 5.0676 -4.5547 25 8 6.3184 6.8857 -3.3008 26 6 6.7205 7.6626 -4.4597 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5771 1.3772 2.1276 33 1 0.7997 2.7291 1.2456 34 1 3.0143 3.2220 2.7024 35 1 2.8720 3.9495 1.0680 36 1 4.3785 1.4082 1.8975 37 1 4.9732 2.7734 0.9033 38 1 5.1974 0.0442 -0.1542 39 1 3.7091 -0.5594 0.6134 40 1 3.8022 -0.4173 -1.1584 41 1 8.1643 0.6233 -3.2311 42 1 4.9562 3.1450 -3.5759 43 1 6.6663 2.9138 -3.1393 44 1 6.5031 4.7785 -1.5129 45 1 4.7930 5.0096 -1.9495 46 1 5.9809 7.5435 -5.2514 47 1 6.7925 8.7149 -4.1846 48 1 7.6904 7.3126 -4.8130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893166709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:03 Heat of formation + Delta-G solvation = -148.279871 kcal Electronic energy + Delta-G solvation = -28118.338841 eV Core-core repulsion = 24365.447834 eV Total energy + Delta-G solvation = -3752.891007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73038 -41.34717 -38.77683 -37.62550 -36.79347 -34.04213 -33.82355 -32.97710 -31.53352 -28.75272 -28.31158 -26.99743 -26.10410 -25.25094 -23.65097 -22.19140 -21.77821 -20.87883 -19.67296 -18.92167 -18.38438 -17.70960 -17.64274 -17.09178 -16.55566 -16.30710 -16.01927 -15.52079 -15.22391 -15.04203 -14.97162 -14.49029 -14.33532 -14.20020 -13.97186 -13.84405 -13.52336 -13.34714 -13.13401 -13.00340 -12.90416 -12.71304 -12.60927 -12.26013 -12.07864 -12.05054 -11.93391 -11.82906 -11.69958 -11.65436 -11.48863 -11.39482 -11.25060 -11.12727 -11.02583 -10.86005 -10.12119 -9.44227 -8.23464 -5.96200 1.09400 1.44085 1.52063 1.62790 1.64319 2.09892 2.38012 3.00841 3.12829 3.76972 3.79391 3.86469 3.98034 4.10299 4.25051 4.28709 4.28942 4.34897 4.41985 4.50927 4.55182 4.56894 4.65244 4.66744 4.74469 4.84022 4.89218 4.90952 4.98416 5.04439 5.11841 5.14529 5.23392 5.23862 5.26120 5.31819 5.36922 5.39658 5.44135 5.56862 5.58585 5.66317 5.70916 5.80696 6.07326 6.46870 6.66682 7.19470 7.65025 8.07832 8.80406 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.005504 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.440116 B = 5086.212460 C = 6584.367016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.085 4.085 4 H 0.055 0.945 5 C -0.105 4.105 6 C -0.122 4.122 7 C -0.109 4.109 8 C -0.058 4.058 9 C -0.132 4.132 10 C 0.473 3.527 11 O -0.636 6.636 12 N -0.447 5.447 13 C -0.340 4.340 14 H 0.122 0.878 15 C -0.002 4.002 16 N -0.896 5.896 17 Si 0.970 3.030 18 H -0.244 1.244 19 H -0.285 1.285 20 H -0.287 1.287 21 C 0.136 3.864 22 C -0.113 4.113 23 C 0.473 3.527 24 O -0.538 6.538 25 O -0.362 6.362 26 C 0.026 3.974 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.021 0.979 41 H 0.267 0.733 42 H 0.025 0.975 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.100 0.900 46 H 0.059 0.941 47 H 0.139 0.861 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 4.883 9.840 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.104 4.104 4 H 0.074 0.926 5 C -0.142 4.142 6 C -0.159 4.159 7 C -0.147 4.147 8 C -0.061 4.061 9 C -0.189 4.189 10 C 0.264 3.736 11 O -0.524 6.524 12 N -0.164 5.164 13 C -0.467 4.467 14 H 0.139 0.861 15 C -0.205 4.205 16 N -0.534 5.534 17 Si 0.794 3.206 18 H -0.166 1.166 19 H -0.211 1.211 20 H -0.213 1.213 21 C 0.011 3.989 22 C -0.152 4.152 23 C 0.317 3.683 24 O -0.428 6.428 25 O -0.278 6.278 26 C -0.067 4.067 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.109 0.891 44 H 0.139 0.861 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.157 0.843 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.144 4.934 8.991 11.062 hybrid contribution 1.011 -0.187 -1.082 1.493 sum -3.132 4.747 7.910 9.742 Atomic orbital electron populations 1.21771 0.95125 1.01837 1.01655 1.21685 0.96219 0.95389 1.01611 1.21812 0.92610 0.97090 0.98851 0.92640 1.22374 0.97554 0.98513 0.95805 1.22488 0.94661 0.97419 1.01327 1.22499 0.98166 0.99140 0.94846 1.21062 0.96171 0.95930 0.92895 1.22019 1.03178 0.93519 1.00154 1.21263 0.82189 0.81849 0.88323 1.90456 1.51814 1.55451 1.54646 1.43536 1.04583 1.40252 1.28069 1.20036 0.99266 1.34440 0.92913 0.86069 1.26204 1.02627 0.95236 0.96385 1.70098 1.29882 1.41089 1.12321 0.85222 0.78060 0.77422 0.79925 1.16642 1.21122 1.21304 1.20824 1.01844 0.87096 0.89106 1.21673 1.04343 0.93639 0.95527 1.23861 0.72677 0.81976 0.89822 1.90643 1.47873 1.75236 1.29045 1.86505 1.79508 1.19616 1.42176 1.23585 1.00310 0.96291 0.86497 0.91834 0.91385 0.94395 0.94079 0.90143 0.89520 0.91717 0.89122 0.93687 0.89199 0.91721 0.90602 0.90123 0.96018 0.92385 0.95685 0.89096 0.86083 0.88213 0.92251 0.84265 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.77 71.98 0.70 -2.79 16 2 C -0.11 -3.18 4.07 30.60 0.12 -3.06 16 3 C -0.08 -2.83 2.53 -10.07 -0.03 -2.85 16 4 H 0.06 2.28 6.39 -2.39 -0.02 2.27 16 5 C -0.11 -2.71 5.53 31.67 0.18 -2.53 16 6 C -0.12 -3.27 6.91 31.89 0.22 -3.05 16 7 C -0.11 -3.41 4.65 31.67 0.15 -3.26 16 8 C -0.06 -2.17 0.61 -52.20 -0.03 -2.20 16 9 C -0.13 -4.85 6.72 71.98 0.48 -4.36 16 10 C 0.47 22.68 6.38 87.66 0.56 23.24 16 11 O -0.64 -34.43 14.85 -3.05 -0.05 -34.47 16 12 N -0.45 -21.87 2.49 -635.55 -1.58 -23.45 16 13 C -0.34 -15.81 5.87 84.04 0.49 -15.32 16 14 H 0.12 5.12 4.48 -2.91 -0.01 5.11 16 15 C 0.00 -0.10 4.92 84.93 0.42 0.32 16 16 N -0.90 -48.29 11.47 21.66 0.25 -48.04 16 17 Si 0.97 37.85 29.60 68.60 2.03 39.88 16 18 H -0.24 -8.57 7.11 99.48 0.71 -7.86 16 19 H -0.29 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.29 -11.46 7.11 99.48 0.71 -10.75 16 21 C 0.14 6.82 4.22 86.38 0.36 7.19 16 22 C -0.11 -4.60 6.10 29.85 0.18 -4.41 16 23 C 0.47 18.64 7.96 71.24 0.57 19.20 16 24 O -0.54 -24.64 15.73 21.97 0.35 -24.29 16 25 O -0.36 -11.56 10.57 -51.38 -0.54 -12.11 16 26 C 0.03 0.61 10.56 113.37 1.20 1.81 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.39 7.51 -2.39 -0.02 1.37 16 29 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.04 1.34 6.66 -2.39 -0.02 1.33 16 31 H 0.08 1.95 6.74 -2.39 -0.02 1.93 16 32 H 0.09 1.81 7.76 -2.39 -0.02 1.79 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 2.39 7.86 -2.39 -0.02 2.37 16 37 H 0.06 2.25 6.01 -2.39 -0.01 2.24 16 38 H 0.08 3.04 5.12 -2.39 -0.01 3.03 16 39 H 0.08 2.36 6.36 -2.38 -0.02 2.34 16 40 H 0.02 0.87 7.13 -2.39 -0.02 0.86 16 41 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 42 H 0.02 1.40 7.48 -2.39 -0.02 1.38 16 43 H 0.09 4.98 5.49 -2.38 -0.01 4.97 16 44 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 45 H 0.10 3.98 8.14 -2.38 -0.02 3.96 16 46 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 47 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 Total: -1.00 -66.42 367.51 6.98 -59.44 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.95 Total: 35.12 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.58 Total: 7.92 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -1.33 Total: -71.49 kcal Atomic # 8 Polarization: -70.63 SS G_CDS: -0.24 Total: -70.87 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -66.42 6.98 -59.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893166709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.838 kcal (2) G-P(sol) polarization free energy of solvation -66.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds