Wall clock time and date at job start Fri Apr 10 2020 22:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99517 * 2 1 4 4 C 1.53002 * 109.46873 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47130 * 64.99475 * 4 3 2 6 6 C 1.35776 * 117.00086 * 179.97438 * 5 4 3 7 7 C 1.35130 * 125.84426 * 180.02562 * 6 5 4 8 8 C 1.41445 * 106.79310 * 179.97438 * 7 6 5 9 9 C 1.34442 * 106.89755 * 0.02562 * 8 7 6 10 10 C 1.50695 * 125.74056 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47428 * 89.99675 * 10 9 8 12 12 C 1.46904 * 111.00028 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46819 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47478 * 300.00059 * 13 12 11 15 15 C 1.53008 * 109.47114 * 60.00084 * 13 12 11 16 16 C 1.53003 * 109.47080 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47311 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99580 * 0.02562 * 17 16 13 19 19 C 1.37870 * 119.99916 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99740 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00174 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47043 * 89.99881 * 21 19 17 23 23 H 1.48499 * 109.47130 * 209.99710 * 21 19 17 24 24 H 1.48498 * 109.47388 * 330.00204 * 21 19 17 25 25 O 1.34326 * 125.83803 * 359.94790 * 6 5 4 26 26 H 1.09005 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47481 * 300.00387 * 1 2 3 28 28 H 1.08997 * 109.47087 * 60.00771 * 1 2 3 29 29 H 1.08993 * 109.47763 * 60.00083 * 3 2 1 30 30 H 1.09000 * 109.47516 * 299.99178 * 3 2 1 31 31 H 1.09002 * 109.47457 * 305.00032 * 4 3 2 32 32 H 1.09000 * 109.47069 * 184.99734 * 4 3 2 33 33 H 1.08001 * 126.59746 * 0.21608 * 7 6 5 34 34 H 1.08002 * 126.54788 * 180.02562 * 8 7 6 35 35 H 1.08994 * 109.47039 * 209.99937 * 10 9 8 36 36 H 1.09004 * 109.47021 * 329.99742 * 10 9 8 37 37 H 1.00905 * 111.00273 * 303.95235 * 11 10 9 38 38 H 1.08996 * 109.46927 * 299.99936 * 12 11 10 39 39 H 1.08999 * 109.47205 * 60.00034 * 12 11 10 40 40 H 1.09004 * 109.47363 * 60.00426 * 14 13 12 41 41 H 1.08999 * 109.47474 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.47039 * 300.00076 * 14 13 12 43 43 H 1.08997 * 109.46841 * 59.99950 * 15 13 12 44 44 H 1.09002 * 109.46660 * 179.97438 * 15 13 12 45 45 H 1.08995 * 109.46906 * 299.99734 * 15 13 12 46 46 H 1.08996 * 109.46953 * 300.00305 * 16 13 12 47 47 H 1.08999 * 109.46917 * 60.00242 * 16 13 12 48 48 H 0.96999 * 119.99535 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3018 0.3985 -1.3810 7 6 5.9016 -0.1531 -2.4590 8 6 7.2926 -0.1424 -2.2028 9 6 7.4623 0.4113 -0.9896 10 6 8.7837 0.6310 -0.2992 11 7 9.3107 1.9539 -0.6598 12 6 10.6014 2.2030 -0.0041 13 6 11.1175 3.5868 -0.4035 14 6 11.2971 3.6457 -1.9217 15 6 10.1098 4.6524 0.0326 16 6 12.4616 3.8467 0.2800 17 6 12.9697 5.2100 -0.1129 18 1 12.3916 5.8293 -0.7827 19 6 14.1720 5.6669 0.3836 20 7 14.6157 6.8565 0.0403 21 14 15.1715 4.5959 1.5426 22 1 16.1026 3.7488 0.7547 23 1 15.9497 5.4591 2.4670 24 1 14.2570 3.7283 2.3274 25 8 6.2537 0.7387 -0.4963 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9783 2.1767 0.0902 33 1 5.4130 -0.5262 -3.3470 34 1 8.0698 -0.5091 -2.8569 35 1 8.6428 0.5779 0.7803 36 1 9.4893 -0.1388 -0.6119 37 1 9.3894 2.0512 -1.6611 38 1 10.4736 2.1607 1.0775 39 1 11.3194 1.4442 -0.3151 40 1 10.3393 3.4609 -2.4083 41 1 11.6652 4.6314 -2.2062 42 1 12.0149 2.8866 -2.2324 43 1 9.9820 4.6105 1.1142 44 1 10.4778 5.6383 -0.2516 45 1 9.1522 4.4675 -0.4539 46 1 12.3332 3.8049 1.3615 47 1 13.1796 3.0876 -0.0303 48 1 15.4618 7.1778 0.3893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894513143.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:05 Heat of formation + Delta-G solvation = -77.427928 kcal Electronic energy + Delta-G solvation = -25422.467445 eV Core-core repulsion = 21672.648808 eV Total energy + Delta-G solvation = -3749.818637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.73874 -39.15397 -37.92588 -37.71667 -34.74522 -33.13620 -32.22209 -31.22311 -29.40334 -27.60054 -26.82932 -26.37730 -25.75087 -24.14883 -23.26137 -21.93460 -21.79550 -20.59327 -18.92761 -17.95803 -17.46939 -16.82591 -16.62585 -16.29444 -15.99897 -15.87548 -15.07102 -14.80968 -14.49467 -14.24342 -14.11882 -13.65139 -13.47230 -13.35542 -13.01270 -12.91108 -12.69182 -12.56437 -12.19289 -12.10940 -11.96521 -11.93071 -11.64604 -11.41368 -11.08080 -10.96292 -10.85622 -10.49670 -10.35320 -10.21716 -9.97213 -9.82262 -9.67740 -9.32533 -8.91229 -8.49433 -8.32091 -7.98977 -5.99614 -3.95845 1.65345 2.24553 2.53065 3.01655 3.21637 3.32076 3.40065 3.43313 4.37318 4.42834 4.48433 4.58378 4.76108 4.77815 4.84553 4.88205 4.91820 4.94497 5.10424 5.20102 5.22597 5.33212 5.37914 5.53959 5.57724 5.63666 5.77095 5.86020 5.88098 6.11074 6.22701 6.36111 6.40343 6.59041 6.59559 6.67587 6.68968 6.80186 7.05294 7.11820 7.15846 7.18399 7.24486 7.32711 7.44861 7.55858 7.85500 8.60151 9.06348 9.63364 11.13464 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.025976 B = 0.002106 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.653130 B =13290.965347 C =13691.704900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.063 3.937 4 C 0.056 3.944 5 O -0.260 6.260 6 C 0.181 3.819 7 C -0.232 4.232 8 C -0.178 4.178 9 C -0.009 4.009 10 C 0.138 3.862 11 N -0.683 5.683 12 C 0.067 3.933 13 C -0.049 4.049 14 C -0.132 4.132 15 C -0.118 4.118 16 C -0.004 4.004 17 C -0.507 4.507 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.876 3.124 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.267 1.267 25 O -0.195 6.195 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.015 0.985 47 H 0.008 0.992 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.543 -15.144 -1.365 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.014 4.014 4 C -0.019 4.019 5 O -0.175 6.175 6 C 0.087 3.913 7 C -0.252 4.252 8 C -0.198 4.198 9 C -0.058 4.058 10 C 0.009 3.991 11 N -0.317 5.317 12 C -0.061 4.061 13 C -0.049 4.049 14 C -0.189 4.189 15 C -0.176 4.176 16 C -0.042 4.042 17 C -0.545 4.545 18 H 0.096 0.904 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.704 3.296 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.191 1.191 25 O -0.096 6.096 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.027 0.973 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.853 -14.769 -0.692 28.918 hybrid contribution 0.992 -0.770 0.199 1.271 sum -23.861 -15.539 -0.493 28.479 Atomic orbital electron populations 1.22773 0.80608 1.03092 1.00098 1.87966 1.20033 1.27065 1.95458 1.22585 0.91067 0.85865 1.01869 1.22878 0.94014 0.99082 0.85884 1.86504 1.13223 1.78288 1.39447 1.20322 0.80353 1.00709 0.89894 1.20733 0.93015 1.11730 0.99764 1.21391 0.96030 1.05567 0.96792 1.22011 0.83868 1.04370 0.95581 1.20303 0.86872 0.91774 1.00126 1.60575 1.29113 1.27056 1.14923 1.22180 0.87374 0.97734 0.98839 1.20428 0.96813 0.92059 0.95632 1.21793 0.98850 1.02968 0.95294 1.21620 0.97140 0.99045 0.99754 1.19631 0.91580 0.97502 0.95479 1.21136 1.04976 0.99784 1.28613 0.90415 1.25023 0.97547 0.94855 0.96224 1.69912 1.21134 1.18106 1.45340 0.86841 0.80479 0.80757 0.81539 1.20523 1.21569 1.19125 1.83930 1.15536 1.66785 1.43319 0.89391 0.93937 0.93814 0.90615 0.91754 0.90570 0.89581 0.83014 0.83021 0.89544 0.92012 0.83558 0.91309 0.95491 0.94529 0.91092 0.94051 0.94202 0.92074 0.93687 0.96672 0.97328 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.52 10.67 -40.09 -0.43 -3.95 16 3 C 0.06 0.45 6.32 37.16 0.23 0.68 16 4 C 0.06 0.50 6.07 37.16 0.23 0.73 16 5 O -0.26 -3.08 10.17 -45.73 -0.47 -3.55 16 6 C 0.18 2.33 7.87 29.63 0.23 2.56 16 7 C -0.23 -2.78 10.94 -39.47 -0.43 -3.21 16 8 C -0.18 -2.04 10.80 -39.70 -0.43 -2.47 16 9 C -0.01 -0.12 6.83 -35.65 -0.24 -0.36 16 10 C 0.14 1.63 6.21 -4.98 -0.03 1.60 16 11 N -0.68 -9.48 5.70 -115.06 -0.66 -10.14 16 12 C 0.07 1.06 4.65 -3.82 -0.02 1.04 16 13 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 14 C -0.13 -2.39 7.89 37.16 0.29 -2.09 16 15 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 16 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 17 C -0.51 -13.92 8.20 -34.44 -0.28 -14.20 16 18 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 19 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 20 N -0.91 -27.68 13.96 55.43 0.77 -26.91 16 21 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 25 O -0.20 -2.64 10.16 -18.25 -0.19 -2.82 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.34 4.66 6.76 -39.29 -0.27 4.39 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 41 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.30 6.61 -51.93 -0.34 0.96 16 45 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 46 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 47 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -31.99 388.06 -7.37 -39.36 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.28 Total: 1.05 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 0.69 Total: -15.89 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.12 Total: -37.04 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -1.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.99 -7.37 -39.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894513143.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.064 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds