Wall clock time and date at job start Fri Apr 10 2020 22:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99517 * 2 1 4 4 C 1.53002 * 109.46873 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47130 * 64.99475 * 4 3 2 6 6 C 1.35776 * 117.00086 * 179.97438 * 5 4 3 7 7 C 1.35130 * 125.84426 * 180.02562 * 6 5 4 8 8 C 1.41445 * 106.79310 * 179.97438 * 7 6 5 9 9 C 1.34442 * 106.89755 * 0.02562 * 8 7 6 10 10 C 1.50695 * 125.74056 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47428 * 89.99675 * 10 9 8 12 12 C 1.46904 * 111.00028 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46819 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47478 * 300.00059 * 13 12 11 15 15 C 1.53008 * 109.47114 * 60.00084 * 13 12 11 16 16 C 1.53003 * 109.47080 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47311 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99580 * 0.02562 * 17 16 13 19 19 C 1.37870 * 119.99916 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99740 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00174 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47043 * 89.99881 * 21 19 17 23 23 H 1.48499 * 109.47130 * 209.99710 * 21 19 17 24 24 H 1.48498 * 109.47388 * 330.00204 * 21 19 17 25 25 O 1.34326 * 125.83803 * 359.94790 * 6 5 4 26 26 H 1.09005 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47481 * 300.00387 * 1 2 3 28 28 H 1.08997 * 109.47087 * 60.00771 * 1 2 3 29 29 H 1.08993 * 109.47763 * 60.00083 * 3 2 1 30 30 H 1.09000 * 109.47516 * 299.99178 * 3 2 1 31 31 H 1.09002 * 109.47457 * 305.00032 * 4 3 2 32 32 H 1.09000 * 109.47069 * 184.99734 * 4 3 2 33 33 H 1.08001 * 126.59746 * 0.21608 * 7 6 5 34 34 H 1.08002 * 126.54788 * 180.02562 * 8 7 6 35 35 H 1.08994 * 109.47039 * 209.99937 * 10 9 8 36 36 H 1.09004 * 109.47021 * 329.99742 * 10 9 8 37 37 H 1.00905 * 111.00273 * 303.95235 * 11 10 9 38 38 H 1.08996 * 109.46927 * 299.99936 * 12 11 10 39 39 H 1.08999 * 109.47205 * 60.00034 * 12 11 10 40 40 H 1.09004 * 109.47363 * 60.00426 * 14 13 12 41 41 H 1.08999 * 109.47474 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.47039 * 300.00076 * 14 13 12 43 43 H 1.08997 * 109.46841 * 59.99950 * 15 13 12 44 44 H 1.09002 * 109.46660 * 179.97438 * 15 13 12 45 45 H 1.08995 * 109.46906 * 299.99734 * 15 13 12 46 46 H 1.08996 * 109.46953 * 300.00305 * 16 13 12 47 47 H 1.08999 * 109.46917 * 60.00242 * 16 13 12 48 48 H 0.96999 * 119.99535 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3018 0.3985 -1.3810 7 6 5.9016 -0.1531 -2.4590 8 6 7.2926 -0.1424 -2.2028 9 6 7.4623 0.4113 -0.9896 10 6 8.7837 0.6310 -0.2992 11 7 9.3107 1.9539 -0.6598 12 6 10.6014 2.2030 -0.0041 13 6 11.1175 3.5868 -0.4035 14 6 11.2971 3.6457 -1.9217 15 6 10.1098 4.6524 0.0326 16 6 12.4616 3.8467 0.2800 17 6 12.9697 5.2100 -0.1129 18 1 12.3916 5.8293 -0.7827 19 6 14.1720 5.6669 0.3836 20 7 14.6157 6.8565 0.0403 21 14 15.1715 4.5959 1.5426 22 1 16.1026 3.7488 0.7547 23 1 15.9497 5.4591 2.4670 24 1 14.2570 3.7283 2.3274 25 8 6.2537 0.7387 -0.4963 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9783 2.1767 0.0902 33 1 5.4130 -0.5262 -3.3470 34 1 8.0698 -0.5091 -2.8569 35 1 8.6428 0.5779 0.7803 36 1 9.4893 -0.1388 -0.6119 37 1 9.3894 2.0512 -1.6611 38 1 10.4736 2.1607 1.0775 39 1 11.3194 1.4442 -0.3151 40 1 10.3393 3.4609 -2.4083 41 1 11.6652 4.6314 -2.2062 42 1 12.0149 2.8866 -2.2324 43 1 9.9820 4.6105 1.1142 44 1 10.4778 5.6383 -0.2516 45 1 9.1522 4.4675 -0.4539 46 1 12.3332 3.8049 1.3615 47 1 13.1796 3.0876 -0.0303 48 1 15.4618 7.1778 0.3893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894513143.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:05 Heat of formation + Delta-G solvation = -97.693571 kcal Electronic energy + Delta-G solvation = -25423.346229 eV Core-core repulsion = 21672.648808 eV Total energy + Delta-G solvation = -3750.697421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.64107 -39.89745 -39.23122 -38.45527 -36.05137 -34.35414 -33.93543 -31.94552 -30.52966 -29.33895 -27.91086 -27.36021 -26.87996 -25.38526 -24.05843 -23.43353 -22.79095 -21.46988 -19.80271 -19.46986 -18.84953 -18.18947 -17.37532 -17.24147 -16.74206 -16.52994 -16.38023 -15.88495 -15.86240 -15.45852 -15.04923 -14.94348 -14.77215 -14.53830 -14.17588 -14.01182 -13.89794 -13.75999 -13.48255 -13.26564 -12.80412 -12.75405 -12.67513 -12.65702 -12.53896 -12.38467 -12.17905 -12.06241 -12.04172 -11.71376 -11.35186 -11.01957 -10.85730 -10.79746 -10.72743 -10.68081 -9.36131 -8.91126 -8.19869 -6.20274 0.73166 1.37504 1.39715 1.40012 1.50672 1.64700 2.22701 2.41344 2.71617 3.15243 3.36936 3.78899 3.89969 3.98301 4.00163 4.10209 4.20766 4.24718 4.29567 4.33878 4.39723 4.46765 4.53449 4.54881 4.59277 4.75710 4.77679 4.81136 4.85363 4.91283 4.93347 5.02088 5.06236 5.10334 5.20360 5.39457 5.46556 5.52546 5.53541 5.63355 5.76633 5.80587 5.83441 6.05483 6.11636 6.30447 6.43086 6.48751 6.87384 7.42113 8.96370 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.025976 B = 0.002106 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.653130 B =13290.965347 C =13691.704900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.064 3.936 4 C 0.050 3.950 5 O -0.272 6.272 6 C 0.167 3.833 7 C -0.242 4.242 8 C -0.172 4.172 9 C -0.026 4.026 10 C 0.143 3.857 11 N -0.690 5.690 12 C 0.080 3.920 13 C -0.050 4.050 14 C -0.125 4.125 15 C -0.110 4.110 16 C -0.003 4.003 17 C -0.504 4.504 18 H 0.042 0.958 19 C -0.002 4.002 20 N -0.956 5.956 21 Si 0.943 3.057 22 H -0.270 1.270 23 H -0.291 1.291 24 H -0.247 1.247 25 O -0.210 6.210 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.347 0.653 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.027 0.973 45 H 0.061 0.939 46 H 0.014 0.986 47 H 0.016 0.984 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.396 -17.573 -0.920 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.012 4.012 4 C -0.024 4.024 5 O -0.187 6.187 6 C 0.073 3.927 7 C -0.262 4.262 8 C -0.191 4.191 9 C -0.075 4.075 10 C 0.014 3.986 11 N -0.324 5.324 12 C -0.049 4.049 13 C -0.050 4.050 14 C -0.183 4.183 15 C -0.167 4.167 16 C -0.041 4.041 17 C -0.542 4.542 18 H 0.061 0.939 19 C -0.197 4.197 20 N -0.598 5.598 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.171 1.171 25 O -0.111 6.111 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.183 0.817 34 H 0.192 0.808 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.168 0.832 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.034 0.966 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.734 -17.218 -0.250 30.964 hybrid contribution 1.129 0.034 -0.003 1.130 sum -24.605 -17.184 -0.253 30.013 Atomic orbital electron populations 1.22943 0.79011 1.03912 1.01188 1.87914 1.21915 1.28239 1.95716 1.22693 0.89653 0.85533 1.03371 1.23104 0.95437 0.99115 0.84759 1.86494 1.12865 1.78595 1.40763 1.20630 0.80719 1.01141 0.90190 1.21079 0.93554 1.11480 1.00074 1.21699 0.96299 1.04559 0.96590 1.22237 0.83813 1.05196 0.96206 1.20334 0.86838 0.91150 1.00238 1.60472 1.27952 1.28920 1.15030 1.21902 0.88514 0.95407 0.99047 1.20367 0.94662 0.94266 0.95715 1.21703 1.00432 1.01109 0.95013 1.21519 0.97949 0.97473 0.99766 1.19596 0.93920 0.94840 0.95699 1.21448 1.04332 1.01341 1.27074 0.93935 1.25958 0.99159 0.96226 0.98384 1.70076 1.21907 1.20362 1.47425 0.85768 0.79036 0.79067 0.79405 1.19518 1.21695 1.17059 1.83910 1.16065 1.67210 1.43906 0.88828 0.92448 0.93081 0.88052 0.91162 0.91080 0.88824 0.81666 0.80750 0.89421 0.89696 0.83238 0.91174 0.94166 0.91773 0.94675 0.93187 0.94305 0.95414 0.91966 0.96739 0.96609 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.25 10.67 -144.33 -1.54 -8.79 16 3 C 0.06 0.83 6.32 71.98 0.45 1.28 16 4 C 0.05 0.87 6.07 71.98 0.44 1.30 16 5 O -0.27 -6.33 10.17 -65.52 -0.67 -6.99 16 6 C 0.17 4.14 7.87 67.10 0.53 4.67 16 7 C -0.24 -5.41 10.94 22.34 0.24 -5.16 16 8 C -0.17 -3.52 10.80 22.19 0.24 -3.28 16 9 C -0.03 -0.60 6.83 24.82 0.17 -0.43 16 10 C 0.14 2.92 6.21 85.56 0.53 3.45 16 11 N -0.69 -17.07 5.70 -517.95 -2.95 -20.02 16 12 C 0.08 2.27 4.65 86.30 0.40 2.67 16 13 C -0.05 -1.82 0.60 -52.18 -0.03 -1.85 16 14 C -0.13 -4.40 7.89 71.98 0.57 -3.83 16 15 C -0.11 -4.17 8.06 71.98 0.58 -3.59 16 16 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 17 C -0.50 -28.17 8.20 25.60 0.21 -27.96 16 18 H 0.04 2.62 5.92 -2.91 -0.02 2.60 16 19 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 20 N -0.96 -60.16 13.96 21.45 0.30 -59.86 16 21 Si 0.94 44.34 27.47 68.60 1.88 46.23 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 25 O -0.21 -5.42 10.16 16.69 0.17 -5.25 16 26 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.35 8.25 6.76 -89.69 -0.61 7.64 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.87 6.57 -2.38 -0.02 1.86 16 41 H 0.03 1.46 6.62 -2.39 -0.02 1.45 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.03 1.20 6.61 -2.39 -0.02 1.19 16 45 H 0.06 2.12 7.60 -2.39 -0.02 2.10 16 46 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 47 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16 48 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -70.30 388.06 3.60 -66.70 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.27 Total: 18.88 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 6.14 Total: -30.89 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.65 Total: -79.88 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -2.04 Total: -21.04 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.23 kcal Total: -70.30 3.60 -66.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894513143.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.991 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds