Wall clock time and date at job start Fri Apr 10 2020 22:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 120.00129 * 2 1 3 5 5 C 1.50706 * 109.47238 * 299.99842 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00200 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00139 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47145 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00333 * 9 7 5 12 12 H 1.48499 * 109.47030 * 330.00237 * 9 7 5 13 13 C 1.52996 * 109.47343 * 240.00063 * 2 1 3 14 14 N 1.46503 * 109.47126 * 59.99461 * 13 2 1 15 15 C 1.34776 * 120.00317 * 179.97438 * 14 13 2 16 16 O 1.21279 * 119.99937 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00245 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.46897 * 60.00530 * 17 15 14 19 19 C 1.53002 * 109.47399 * 300.00733 * 17 15 14 20 20 C 1.52997 * 109.47143 * 179.97438 * 19 17 15 21 21 C 1.53006 * 109.47127 * 60.00165 * 20 19 17 22 22 C 1.52999 * 109.46626 * 299.99539 * 21 20 19 23 23 H 1.08993 * 109.47839 * 299.99931 * 22 21 20 24 24 C 1.50706 * 109.46960 * 179.97438 * 22 21 20 25 25 O 1.20819 * 120.00267 * 240.00023 * 24 22 21 26 26 O 1.34228 * 119.99390 * 60.00659 * 24 22 21 27 27 C 1.52996 * 109.47381 * 180.02562 * 17 15 14 28 28 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 29 29 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 30 30 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 33 33 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 34 34 H 1.09001 * 109.46832 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47611 * 60.00453 * 4 2 1 36 36 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.47554 * 179.97438 * 13 2 1 38 38 H 1.08996 * 109.47261 * 300.00175 * 13 2 1 39 39 H 0.96998 * 119.99881 * 0.02562 * 14 13 2 40 40 H 1.09004 * 109.46930 * 299.99776 * 19 17 15 41 41 H 1.09002 * 109.47067 * 59.99694 * 19 17 15 42 42 H 1.09001 * 109.46832 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.47261 * 299.99863 * 20 19 17 44 44 H 1.08988 * 109.47037 * 59.99531 * 21 20 19 45 45 H 1.08996 * 109.47129 * 180.02562 * 21 20 19 46 46 H 0.96705 * 116.99784 * 180.02562 * 26 24 22 47 47 H 1.09001 * 109.47364 * 300.00825 * 27 17 15 48 48 H 1.09004 * 109.46785 * 60.00324 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9165 0.8670 2.3806 7 6 1.8712 -0.4816 3.7319 8 7 1.4325 0.1381 4.8058 9 14 2.9451 -2.0004 3.9034 10 1 4.3729 -1.5946 3.9481 11 1 2.5944 -2.7159 5.1564 12 1 2.7219 -2.8981 2.7417 13 6 2.0401 -0.7212 -1.2492 14 7 1.5516 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6695 16 8 2.5750 -1.4767 -3.7808 17 6 1.3757 0.2199 -4.8999 18 1 1.7391 1.2476 -4.8996 19 6 -0.1543 0.2200 -4.9005 20 6 -0.6638 0.9421 -6.1494 21 6 -0.1535 0.2216 -7.3990 22 6 1.3765 0.2216 -7.3984 23 1 1.7399 1.2492 -7.3977 24 6 1.8792 -0.4886 -8.6289 25 8 2.5738 -1.4710 -8.5180 26 8 1.5554 -0.0297 -9.8480 27 6 1.8856 -0.5013 -6.1492 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7208 1.2494 35 1 1.6768 -1.7490 1.2492 36 1 1.6668 -0.1934 5.6868 37 1 3.1300 -0.7208 -1.2495 38 1 1.6768 -1.7488 -1.2493 39 1 0.9942 0.7582 -2.3564 40 1 -0.5177 -0.8077 -4.9008 41 1 -0.5179 0.7337 -4.0104 42 1 -1.7538 0.9418 -6.1499 43 1 -0.3004 1.9698 -6.1486 44 1 -0.5168 -0.8060 -7.3997 45 1 -0.5161 0.7363 -8.2887 46 1 1.9011 -0.5187 -10.6073 47 1 2.9756 -0.5018 -6.1490 48 1 1.5219 -1.5289 -6.1494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905115934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:08 Heat of formation + Delta-G solvation = -170.862994 kcal Electronic energy + Delta-G solvation = -26463.227556 eV Core-core repulsion = 22709.357271 eV Total energy + Delta-G solvation = -3753.870285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.02394 -39.96523 -38.03162 -37.00530 -36.43738 -33.72174 -32.29526 -31.63036 -31.24604 -27.85240 -26.58039 -26.42645 -24.89309 -23.82591 -22.23738 -21.71197 -20.41812 -19.92728 -18.54598 -18.16008 -17.35505 -16.84556 -16.46228 -16.08830 -15.55742 -15.44157 -14.98450 -14.38559 -14.26305 -14.15201 -13.87845 -13.62284 -13.43675 -13.11516 -12.85679 -12.74900 -12.69088 -12.28278 -12.26976 -11.95184 -11.74082 -11.56021 -11.25717 -11.16420 -11.12628 -11.10402 -11.00861 -10.81832 -10.63029 -10.53254 -10.48730 -9.98528 -9.84199 -9.73635 -9.39073 -9.00405 -8.79973 -8.54399 -6.05225 -4.02533 1.86747 2.62207 2.74448 3.31176 3.36393 3.39443 3.43557 4.21077 4.26533 4.35284 4.45026 4.61685 4.71913 4.87116 4.92224 4.97246 5.05905 5.19276 5.23645 5.27434 5.39629 5.51573 5.54889 5.59491 5.61076 5.63282 5.77172 5.79068 5.94186 6.05106 6.09017 6.10540 6.17295 6.18720 6.29817 6.47576 6.57536 6.68644 6.89057 6.99763 7.03444 7.19200 7.35634 7.54628 7.66390 7.78794 8.36943 8.51805 8.98613 9.57600 11.07443 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.002519 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.555260 B =11114.264683 C =11675.182598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.720 5.720 15 C 0.511 3.489 16 O -0.542 6.542 17 C -0.106 4.106 18 H 0.099 0.901 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.078 4.078 23 H 0.111 0.889 24 C 0.480 3.520 25 O -0.508 6.508 26 O -0.518 6.518 27 C -0.085 4.085 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.014 0.986 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.399 0.601 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.409 0.591 47 H 0.080 0.920 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 4.366 -26.982 27.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.372 5.372 15 C 0.297 3.703 16 O -0.420 6.420 17 C -0.127 4.127 18 H 0.117 0.883 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.097 4.097 23 H 0.129 0.871 24 C 0.322 3.678 25 O -0.395 6.395 26 O -0.330 6.330 27 C -0.122 4.122 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.267 0.733 47 H 0.099 0.901 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.915 3.577 -26.469 26.995 hybrid contribution 0.678 -0.774 -0.157 1.041 sum -3.237 2.804 -26.626 26.969 Atomic orbital electron populations 1.21770 0.94790 1.01245 1.00730 1.20681 0.95823 0.95858 0.93937 1.21776 1.00455 0.95626 1.00744 1.19597 0.95930 0.95877 0.92645 1.21072 1.31874 1.13280 0.88608 0.90399 1.25000 0.95762 0.96706 0.96001 1.69900 1.45950 1.40563 0.97880 0.86859 0.81170 0.84083 0.77657 1.20385 1.21506 1.18992 1.21635 0.98869 0.96049 0.83245 1.46177 1.53236 1.31995 1.05766 1.20464 0.80467 0.84755 0.84651 1.90716 1.38015 1.26371 1.86855 1.21315 0.97192 1.00937 0.93261 0.88318 1.21604 0.92825 1.02135 0.98785 1.21528 1.01057 0.99418 0.93257 1.21570 0.91763 1.02207 0.99454 1.21111 0.98047 1.01013 0.89571 0.87140 1.23540 0.76969 0.82559 0.84714 1.90764 1.35547 1.26006 1.87190 1.84533 1.72434 1.59106 1.16947 1.21238 1.02013 0.99613 0.89384 0.90884 0.95030 0.93418 0.93420 0.95024 0.90880 0.96821 0.96368 0.92796 0.91890 0.91872 0.76555 0.90967 0.90786 0.90738 0.91148 0.91154 0.90362 0.73255 0.90139 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.06 -1.11 0.54 -154.51 -0.08 -1.20 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 4 C 0.00 -0.06 3.11 -27.88 -0.09 -0.15 16 5 C -0.51 -13.53 8.20 -34.44 -0.28 -13.81 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 9 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 14 N -0.72 -9.47 4.85 -60.30 -0.29 -9.76 16 15 C 0.51 6.96 7.15 -10.99 -0.08 6.88 16 16 O -0.54 -9.81 15.98 5.56 0.09 -9.72 16 17 C -0.11 -0.97 2.53 -91.77 -0.23 -1.20 16 18 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 19 C -0.12 -0.84 5.10 -26.73 -0.14 -0.98 16 20 C -0.12 -0.61 5.92 -26.73 -0.16 -0.77 16 21 C -0.11 -0.66 5.14 -26.73 -0.14 -0.80 16 22 C -0.08 -0.57 2.63 -91.74 -0.24 -0.82 16 23 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 24 C 0.48 4.29 7.63 36.01 0.27 4.57 16 25 O -0.51 -6.54 16.74 -18.74 -0.31 -6.85 16 26 O -0.52 -3.19 13.33 -39.25 -0.52 -3.72 16 27 C -0.08 -0.86 3.06 -26.71 -0.08 -0.94 16 28 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 33 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 35 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.40 4.32 5.58 -40.82 -0.23 4.09 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.46 8.14 -51.94 -0.42 0.04 16 45 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 46 H 0.41 0.98 9.10 45.56 0.41 1.39 16 47 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 48 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -34.19 374.07 -7.40 -41.58 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.34 Total: 1.41 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.76 Total: -9.10 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.48 Total: -36.07 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.75 Total: -20.29 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.19 -7.40 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905115934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.281 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds