Wall clock time and date at job start Fri Apr 10 2020 22:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 120.00129 * 2 1 3 5 5 C 1.50706 * 109.47238 * 299.99842 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00200 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00139 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47145 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00333 * 9 7 5 12 12 H 1.48499 * 109.47030 * 330.00237 * 9 7 5 13 13 C 1.52996 * 109.47343 * 240.00063 * 2 1 3 14 14 N 1.46503 * 109.47126 * 59.99461 * 13 2 1 15 15 C 1.34776 * 120.00317 * 179.97438 * 14 13 2 16 16 O 1.21279 * 119.99937 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00245 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.46897 * 60.00530 * 17 15 14 19 19 C 1.53002 * 109.47399 * 300.00733 * 17 15 14 20 20 C 1.52997 * 109.47143 * 179.97438 * 19 17 15 21 21 C 1.53006 * 109.47127 * 60.00165 * 20 19 17 22 22 C 1.52999 * 109.46626 * 299.99539 * 21 20 19 23 23 H 1.08993 * 109.47839 * 299.99931 * 22 21 20 24 24 C 1.50706 * 109.46960 * 179.97438 * 22 21 20 25 25 O 1.20819 * 120.00267 * 240.00023 * 24 22 21 26 26 O 1.34228 * 119.99390 * 60.00659 * 24 22 21 27 27 C 1.52996 * 109.47381 * 180.02562 * 17 15 14 28 28 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 29 29 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 30 30 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 33 33 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 34 34 H 1.09001 * 109.46832 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47611 * 60.00453 * 4 2 1 36 36 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.47554 * 179.97438 * 13 2 1 38 38 H 1.08996 * 109.47261 * 300.00175 * 13 2 1 39 39 H 0.96998 * 119.99881 * 0.02562 * 14 13 2 40 40 H 1.09004 * 109.46930 * 299.99776 * 19 17 15 41 41 H 1.09002 * 109.47067 * 59.99694 * 19 17 15 42 42 H 1.09001 * 109.46832 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.47261 * 299.99863 * 20 19 17 44 44 H 1.08988 * 109.47037 * 59.99531 * 21 20 19 45 45 H 1.08996 * 109.47129 * 180.02562 * 21 20 19 46 46 H 0.96705 * 116.99784 * 180.02562 * 26 24 22 47 47 H 1.09001 * 109.47364 * 300.00825 * 27 17 15 48 48 H 1.09004 * 109.46785 * 60.00324 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9165 0.8670 2.3806 7 6 1.8712 -0.4816 3.7319 8 7 1.4325 0.1381 4.8058 9 14 2.9451 -2.0004 3.9034 10 1 4.3729 -1.5946 3.9481 11 1 2.5944 -2.7159 5.1564 12 1 2.7219 -2.8981 2.7417 13 6 2.0401 -0.7212 -1.2492 14 7 1.5516 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6695 16 8 2.5750 -1.4767 -3.7808 17 6 1.3757 0.2199 -4.8999 18 1 1.7391 1.2476 -4.8996 19 6 -0.1543 0.2200 -4.9005 20 6 -0.6638 0.9421 -6.1494 21 6 -0.1535 0.2216 -7.3990 22 6 1.3765 0.2216 -7.3984 23 1 1.7399 1.2492 -7.3977 24 6 1.8792 -0.4886 -8.6289 25 8 2.5738 -1.4710 -8.5180 26 8 1.5554 -0.0297 -9.8480 27 6 1.8856 -0.5013 -6.1492 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7208 1.2494 35 1 1.6768 -1.7490 1.2492 36 1 1.6668 -0.1934 5.6868 37 1 3.1300 -0.7208 -1.2495 38 1 1.6768 -1.7488 -1.2493 39 1 0.9942 0.7582 -2.3564 40 1 -0.5177 -0.8077 -4.9008 41 1 -0.5179 0.7337 -4.0104 42 1 -1.7538 0.9418 -6.1499 43 1 -0.3004 1.9698 -6.1486 44 1 -0.5168 -0.8060 -7.3997 45 1 -0.5161 0.7363 -8.2887 46 1 1.9011 -0.5187 -10.6073 47 1 2.9756 -0.5018 -6.1490 48 1 1.5219 -1.5289 -6.1494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905115934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:07 Heat of formation + Delta-G solvation = -194.314500 kcal Electronic energy + Delta-G solvation = -26464.244490 eV Core-core repulsion = 22709.357271 eV Total energy + Delta-G solvation = -3754.887219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76453 -40.96110 -39.07066 -38.15144 -37.09770 -35.22753 -34.04999 -32.46609 -31.85960 -29.71504 -27.96465 -27.70567 -25.51001 -25.02379 -23.72826 -22.29752 -21.33162 -20.69777 -19.79928 -18.97956 -18.89490 -18.27848 -17.34229 -16.86371 -16.65327 -16.45055 -16.12437 -15.72083 -15.42993 -15.26750 -14.92032 -14.73595 -14.53813 -14.24082 -14.18258 -13.93514 -13.78931 -13.44356 -13.30165 -12.92885 -12.83733 -12.61840 -12.57780 -12.37467 -12.29745 -12.21211 -12.15940 -11.84096 -11.77048 -11.64727 -11.50613 -11.42574 -11.26292 -11.13054 -10.91796 -10.70938 -10.62490 -10.02175 -8.22898 -6.22488 1.19936 1.34388 1.37655 1.47271 1.68215 2.01582 2.35976 2.38154 3.12551 3.50632 3.68251 3.77536 3.90828 3.97239 4.06132 4.12239 4.17644 4.26936 4.39181 4.41596 4.44032 4.62915 4.65409 4.68093 4.72391 4.81248 4.96994 5.02791 5.04046 5.08040 5.11259 5.15050 5.19869 5.29601 5.30778 5.32208 5.38963 5.41622 5.49204 5.51957 5.57670 5.63087 5.71354 5.77272 6.37829 6.63050 6.84365 6.99196 7.31720 7.40267 8.92506 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.002519 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.555260 B =11114.264683 C =11675.182598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C -0.124 4.124 4 C -0.005 4.005 5 C -0.499 4.499 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.932 3.068 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.254 1.254 13 C 0.137 3.863 14 N -0.707 5.707 15 C 0.508 3.492 16 O -0.593 6.593 17 C -0.094 4.094 18 H 0.133 0.867 19 C -0.115 4.115 20 C -0.108 4.108 21 C -0.109 4.109 22 C -0.073 4.073 23 H 0.140 0.860 24 C 0.484 3.516 25 O -0.558 6.558 26 O -0.507 6.507 27 C -0.081 4.081 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.262 0.738 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.414 0.586 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.425 0.575 47 H 0.054 0.946 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 5.984 -29.582 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.757 3.243 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.178 1.178 13 C 0.013 3.987 14 N -0.360 5.360 15 C 0.296 3.704 16 O -0.474 6.474 17 C -0.115 4.115 18 H 0.151 0.849 19 C -0.152 4.152 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.092 4.092 23 H 0.158 0.842 24 C 0.328 3.672 25 O -0.449 6.449 26 O -0.321 6.321 27 C -0.120 4.120 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.253 0.747 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.114 0.886 46 H 0.287 0.713 47 H 0.073 0.927 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.861 5.232 -29.113 29.976 hybrid contribution 0.937 -1.247 0.568 1.660 sum -3.924 3.985 -28.545 29.088 Atomic orbital electron populations 1.21703 0.93695 1.01169 1.01485 1.20540 0.96641 0.96139 0.92417 1.21709 1.00165 0.94761 1.01481 1.19587 0.95657 0.95646 0.93443 1.21359 1.30187 1.12235 0.89945 0.92676 1.25804 0.97502 0.99722 0.96000 1.70030 1.48139 1.42570 0.98398 0.85934 0.79603 0.80921 0.77830 1.19803 1.21430 1.17845 1.21245 0.98080 0.95495 0.83880 1.45976 1.53156 1.32151 1.04730 1.21305 0.79300 0.84110 0.85693 1.90703 1.40319 1.28804 1.87537 1.21337 0.98648 1.01545 0.89961 0.84942 1.21648 0.90869 1.01868 1.00861 1.21527 1.01828 0.99948 0.91220 1.21585 0.90215 1.01961 1.00870 1.21139 0.99162 1.01594 0.87290 0.84189 1.23879 0.75805 0.81687 0.85821 1.90756 1.37967 1.28283 1.87913 1.84490 1.71895 1.58876 1.16793 1.21115 1.00431 0.98694 0.91715 0.93521 0.90829 0.93941 0.93880 0.90855 0.93526 0.97109 0.96976 0.92871 0.93093 0.93216 0.74736 0.92672 0.89260 0.89392 0.88906 0.92497 0.88569 0.71309 0.92683 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 2 C -0.06 -1.97 0.54 -52.18 -0.03 -1.99 16 3 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 4 C -0.01 -0.24 3.11 29.85 0.09 -0.15 16 5 C -0.50 -26.88 8.20 25.60 0.21 -26.67 16 6 H 0.06 3.17 5.92 -2.91 -0.02 3.15 16 7 C 0.01 0.34 5.47 84.65 0.46 0.81 16 8 N -0.95 -58.31 13.96 21.44 0.30 -58.01 16 9 Si 0.93 44.70 27.47 68.60 1.88 46.59 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 13 C 0.14 4.35 4.56 86.38 0.39 4.75 16 14 N -0.71 -16.87 4.85 -463.08 -2.25 -19.12 16 15 C 0.51 13.11 7.15 87.66 0.63 13.73 16 16 O -0.59 -21.71 15.98 -3.03 -0.05 -21.76 16 17 C -0.09 -1.48 2.53 -11.54 -0.03 -1.51 16 18 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 19 C -0.11 -1.27 5.10 30.59 0.16 -1.12 16 20 C -0.11 -0.64 5.92 30.60 0.18 -0.46 16 21 C -0.11 -0.92 5.14 30.60 0.16 -0.76 16 22 C -0.07 -0.89 2.63 -11.52 -0.03 -0.93 16 23 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 24 C 0.48 8.05 7.63 71.24 0.54 8.60 16 25 O -0.56 -14.65 16.74 21.99 0.37 -14.28 16 26 O -0.51 -5.06 13.33 -51.40 -0.68 -5.74 16 27 C -0.08 -1.59 3.06 30.61 0.09 -1.50 16 28 H 0.05 1.74 6.62 -2.39 -0.02 1.72 16 29 H 0.07 1.69 6.86 -2.39 -0.02 1.68 16 30 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 33 H 0.05 1.74 6.62 -2.39 -0.02 1.72 16 34 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 35 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.41 7.22 5.58 -92.71 -0.52 6.70 16 40 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.09 0.75 7.56 -2.39 -0.02 0.73 16 42 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.10 0.54 8.11 -2.39 -0.02 0.52 16 46 H 0.43 1.20 9.10 -74.05 -0.67 0.53 16 47 H 0.05 1.34 8.06 -2.39 -0.02 1.32 16 48 H 0.05 1.28 8.06 -2.38 -0.02 1.26 16 Total: -1.00 -78.71 374.07 3.28 -75.44 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -0.28 Total: 10.80 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 3.99 Total: -13.91 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.95 Total: -77.12 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.37 Total: -41.79 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -78.71 3.28 -75.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905115934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.877 kcal (2) G-P(sol) polarization free energy of solvation -78.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds