Wall clock time and date at job start Fri Apr 10 2020 22:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99426 * 2 1 4 4 O 1.20824 * 120.00531 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99504 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47512 * 60.00080 * 5 3 2 7 7 C 1.53000 * 109.47331 * 299.99802 * 5 3 2 8 8 C 1.53000 * 109.47527 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47137 * 59.99847 * 8 7 5 10 10 C 1.53000 * 109.47037 * 300.00453 * 9 8 7 11 11 C 1.53000 * 109.47527 * 59.99786 * 10 9 8 12 12 H 1.08999 * 109.47183 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.46812 * 59.99873 * 11 10 9 14 14 O 1.21279 * 120.00356 * 248.90063 * 13 11 10 15 15 N 1.34772 * 120.00067 * 68.90462 * 13 11 10 16 16 C 1.46505 * 119.99813 * 4.44610 * 15 13 11 17 17 C 1.50701 * 109.46949 * 83.82020 * 16 15 13 18 18 H 1.07993 * 120.00080 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99827 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99877 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47222 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47026 * 120.00130 * 21 19 17 24 24 H 1.48497 * 109.47410 * 239.99930 * 21 19 17 25 25 C 1.46502 * 120.00331 * 184.44767 * 15 13 11 26 26 C 1.52995 * 109.47262 * 299.17134 * 25 15 13 27 27 C 1.53001 * 109.46894 * 59.17108 * 25 15 13 28 28 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47416 * 300.00073 * 1 2 3 30 30 H 1.09003 * 109.47463 * 60.00650 * 1 2 3 31 31 H 1.08997 * 109.47201 * 59.99914 * 7 5 3 32 32 H 1.09006 * 109.46742 * 300.00444 * 7 5 3 33 33 H 1.08998 * 109.46612 * 299.99648 * 8 7 5 34 34 H 1.08999 * 109.47183 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.46915 * 180.02562 * 9 8 7 36 36 H 1.08994 * 109.46854 * 60.00148 * 9 8 7 37 37 H 1.08997 * 109.47201 * 180.02562 * 10 9 8 38 38 H 1.09006 * 109.46742 * 299.99692 * 10 9 8 39 39 H 1.09003 * 109.46870 * 203.82027 * 16 15 13 40 40 H 1.08996 * 109.47173 * 323.81480 * 16 15 13 41 41 H 0.97004 * 120.00154 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.47179 * 179.17077 * 25 15 13 43 43 H 1.09006 * 109.46983 * 66.71316 * 26 25 15 44 44 H 1.08995 * 109.47510 * 186.71094 * 26 25 15 45 45 H 1.08996 * 109.47065 * 306.71962 * 26 25 15 46 46 H 1.09000 * 109.47253 * 62.95729 * 27 25 15 47 47 H 1.09000 * 109.46834 * 182.95262 * 27 25 15 48 48 H 1.08998 * 109.46974 * 302.95605 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9556 0.7811 -0.8908 7 6 4.1138 0.5812 1.2483 8 6 5.6417 0.6618 1.2481 9 6 6.0750 2.1292 1.2485 10 6 5.5274 2.8230 -0.0004 11 6 3.9995 2.7424 -0.0002 12 1 3.6095 3.2362 -0.8902 13 6 3.4607 3.4249 1.2306 14 8 2.9360 2.7703 2.1064 15 7 3.5618 4.7627 1.3581 16 6 4.1066 5.5641 0.2593 17 6 3.0142 5.8610 -0.7355 18 1 2.0144 5.4896 -0.5665 19 6 3.2916 6.6060 -1.8621 20 7 4.5094 7.0579 -2.0682 21 14 1.9378 6.9735 -3.0955 22 1 0.6678 6.3569 -2.6350 23 1 1.7601 8.4432 -3.2123 24 1 2.3090 6.4131 -4.4197 25 6 3.1271 5.4157 2.5953 26 6 1.6363 5.1510 2.8151 27 6 3.9239 4.8550 3.7750 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 3.8048 -0.4640 1.2483 32 1 3.7243 1.0752 2.1385 33 1 6.0313 0.1681 0.3579 34 1 6.0317 0.1680 2.1381 35 1 7.1634 2.1866 1.2478 36 1 5.6852 2.6228 2.1386 37 1 5.8364 3.8682 -0.0004 38 1 5.9172 2.3293 -0.8907 39 1 4.5030 6.4998 0.6538 40 1 4.9057 5.0100 -0.2331 41 1 4.7046 7.5817 -2.8610 42 1 3.2980 6.4895 2.5190 43 1 1.4805 4.0900 3.0102 44 1 1.2858 5.7324 3.6678 45 1 1.0804 5.4419 1.9238 46 1 4.9803 5.0896 3.6442 47 1 3.5644 5.3025 4.7017 48 1 3.7946 3.7737 3.8196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906481184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:10 Heat of formation + Delta-G solvation = -132.962243 kcal Electronic energy + Delta-G solvation = -29271.521346 eV Core-core repulsion = 25519.294561 eV Total energy + Delta-G solvation = -3752.226785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83623 -39.32907 -37.16147 -35.94574 -35.09384 -33.17141 -31.83052 -31.10510 -29.97986 -27.49487 -26.88513 -26.53143 -24.07114 -23.28063 -22.31112 -21.54622 -20.54134 -19.85290 -17.53108 -17.14525 -16.56993 -16.40135 -16.09152 -15.54942 -15.31244 -14.73997 -14.43920 -14.09060 -13.77819 -13.63052 -13.34915 -13.01946 -12.84470 -12.68515 -12.47878 -12.27844 -12.14401 -11.94199 -11.75029 -11.71829 -11.53078 -11.36992 -11.17194 -10.96368 -10.83319 -10.69949 -10.61592 -10.48442 -10.46251 -10.32386 -10.17176 -9.90910 -9.80985 -9.68069 -9.48811 -8.53607 -8.33087 -7.54007 -6.11910 -4.16639 2.73795 3.06243 3.25462 3.33996 3.41293 3.61887 4.03403 4.40554 4.85007 4.99195 5.01489 5.21635 5.27905 5.34717 5.37421 5.41604 5.44330 5.51250 5.62886 5.68939 5.71317 5.72232 5.79904 5.89625 5.92328 6.06517 6.15677 6.18098 6.29092 6.30451 6.36294 6.41581 6.49614 6.52452 6.55223 6.63378 6.76155 6.78736 6.83261 6.95894 7.02416 7.32251 7.72995 7.87425 8.16269 8.24571 8.51549 8.92908 9.22838 9.50867 10.94552 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.006482 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.879406 B = 4318.827109 C = 4903.559537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.483 6.483 5 C -0.054 4.054 6 H 0.102 0.898 7 C -0.129 4.129 8 C -0.112 4.112 9 C -0.123 4.123 10 C -0.116 4.116 11 C -0.095 4.095 12 H 0.116 0.884 13 C 0.548 3.452 14 O -0.567 6.567 15 N -0.591 5.591 16 C 0.227 3.773 17 C -0.528 4.528 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.149 3.851 26 C -0.160 4.160 27 C -0.164 4.164 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.048 0.952 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.052 0.948 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -11.770 5.653 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.284 6.284 3 C 0.308 3.692 4 O -0.367 6.367 5 C -0.073 4.073 6 H 0.120 0.880 7 C -0.166 4.166 8 C -0.149 4.149 9 C -0.160 4.160 10 C -0.153 4.153 11 C -0.116 4.116 12 H 0.134 0.866 13 C 0.337 3.663 14 O -0.450 6.450 15 N -0.321 5.321 16 C 0.108 3.892 17 C -0.567 4.567 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.045 3.955 26 C -0.218 4.218 27 C -0.222 4.222 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.574 -11.636 5.972 13.092 hybrid contribution -1.011 0.584 -1.069 1.583 sum -0.437 -11.052 4.903 12.099 Atomic orbital electron populations 1.23135 0.77307 1.02794 1.02411 1.86465 1.22686 1.34264 1.84975 1.23653 0.91956 0.81160 0.72452 1.90725 1.66713 1.35912 1.43394 1.20833 0.87052 0.97785 1.01640 0.87991 1.21934 0.95538 1.00137 0.99026 1.21489 0.95451 0.96646 1.01359 1.21604 1.00020 0.95692 0.98730 1.21708 0.92467 1.02921 0.98201 1.21194 0.96998 0.92917 1.00503 0.86634 1.19803 0.77635 0.82125 0.86697 1.90363 1.46315 1.64586 1.43716 1.48189 1.61519 1.06092 1.16254 1.19699 0.94726 0.91001 0.83809 1.21624 0.96631 1.33049 1.05354 0.91813 1.24912 0.95544 0.95528 0.97869 1.69929 1.19064 1.36373 1.28016 0.86531 0.82489 0.78005 0.81086 1.19626 1.20955 1.20918 1.20796 0.93937 0.96619 0.84143 1.22124 0.95828 1.03061 1.00768 1.22185 0.99390 1.03313 0.97353 0.88773 0.92130 0.92299 0.91901 0.87154 0.92319 0.92072 0.92033 0.91785 0.89069 0.91248 0.94923 0.93409 0.92755 0.90351 0.90873 0.93621 0.92492 0.93342 0.92850 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 16 2 O -0.37 -5.79 10.47 -39.26 -0.41 -6.20 16 3 C 0.47 8.56 6.36 36.01 0.23 8.79 16 4 O -0.48 -10.68 14.16 -25.02 -0.35 -11.03 16 5 C -0.05 -0.87 2.38 -91.77 -0.22 -1.09 16 6 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 7 C -0.13 -1.88 4.87 -26.73 -0.13 -2.01 16 8 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 9 C -0.12 -1.71 5.70 -26.73 -0.15 -1.86 16 10 C -0.12 -1.84 5.15 -26.73 -0.14 -1.98 16 11 C -0.09 -1.76 1.38 -91.77 -0.13 -1.89 16 12 H 0.12 2.49 7.08 -51.93 -0.37 2.12 16 13 C 0.55 11.15 3.64 -10.99 -0.04 11.11 16 14 O -0.57 -11.82 8.38 -12.73 -0.11 -11.93 16 15 N -0.59 -12.51 2.42 -167.47 -0.41 -12.92 16 16 C 0.23 5.40 4.77 -5.19 -0.02 5.37 16 17 C -0.53 -14.10 8.64 -34.44 -0.30 -14.39 16 18 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 21 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.15 2.85 3.28 -67.93 -0.22 2.63 16 26 C -0.16 -3.05 9.01 37.16 0.33 -2.72 16 27 C -0.16 -2.70 9.15 37.16 0.34 -2.36 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 32 H 0.11 1.89 5.20 -51.93 -0.27 1.62 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.00 7.22 -51.93 -0.37 0.63 16 37 H 0.09 1.62 5.33 -51.93 -0.28 1.34 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.03 0.82 7.79 -51.93 -0.40 0.41 16 40 H 0.05 1.13 4.26 -51.93 -0.22 0.91 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 42 H 0.08 1.50 7.71 -51.93 -0.40 1.09 16 43 H 0.07 1.50 6.31 -51.93 -0.33 1.17 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 1.32 6.19 -51.93 -0.32 1.00 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -30.16 364.84 -7.70 -37.86 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.00 Total: 5.16 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 0.36 Total: 1.23 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.33 Total: -36.90 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.87 Total: -29.17 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.16 -7.70 -37.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906481184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.104 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds