Wall clock time and date at job start Fri Apr 10 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99426 * 2 1 4 4 O 1.20824 * 120.00531 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99504 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47512 * 60.00080 * 5 3 2 7 7 C 1.53000 * 109.47331 * 299.99802 * 5 3 2 8 8 C 1.53000 * 109.47527 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47137 * 59.99847 * 8 7 5 10 10 C 1.53000 * 109.47037 * 300.00453 * 9 8 7 11 11 C 1.53000 * 109.47527 * 59.99786 * 10 9 8 12 12 H 1.08999 * 109.47183 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.46812 * 59.99873 * 11 10 9 14 14 O 1.21279 * 120.00356 * 248.90063 * 13 11 10 15 15 N 1.34772 * 120.00067 * 68.90462 * 13 11 10 16 16 C 1.46505 * 119.99813 * 4.44610 * 15 13 11 17 17 C 1.50701 * 109.46949 * 83.82020 * 16 15 13 18 18 H 1.07993 * 120.00080 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99827 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99877 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47222 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47026 * 120.00130 * 21 19 17 24 24 H 1.48497 * 109.47410 * 239.99930 * 21 19 17 25 25 C 1.46502 * 120.00331 * 184.44767 * 15 13 11 26 26 C 1.52995 * 109.47262 * 299.17134 * 25 15 13 27 27 C 1.53001 * 109.46894 * 59.17108 * 25 15 13 28 28 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47416 * 300.00073 * 1 2 3 30 30 H 1.09003 * 109.47463 * 60.00650 * 1 2 3 31 31 H 1.08997 * 109.47201 * 59.99914 * 7 5 3 32 32 H 1.09006 * 109.46742 * 300.00444 * 7 5 3 33 33 H 1.08998 * 109.46612 * 299.99648 * 8 7 5 34 34 H 1.08999 * 109.47183 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.46915 * 180.02562 * 9 8 7 36 36 H 1.08994 * 109.46854 * 60.00148 * 9 8 7 37 37 H 1.08997 * 109.47201 * 180.02562 * 10 9 8 38 38 H 1.09006 * 109.46742 * 299.99692 * 10 9 8 39 39 H 1.09003 * 109.46870 * 203.82027 * 16 15 13 40 40 H 1.08996 * 109.47173 * 323.81480 * 16 15 13 41 41 H 0.97004 * 120.00154 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.47179 * 179.17077 * 25 15 13 43 43 H 1.09006 * 109.46983 * 66.71316 * 26 25 15 44 44 H 1.08995 * 109.47510 * 186.71094 * 26 25 15 45 45 H 1.08996 * 109.47065 * 306.71962 * 26 25 15 46 46 H 1.09000 * 109.47253 * 62.95729 * 27 25 15 47 47 H 1.09000 * 109.46834 * 182.95262 * 27 25 15 48 48 H 1.08998 * 109.46974 * 302.95605 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9556 0.7811 -0.8908 7 6 4.1138 0.5812 1.2483 8 6 5.6417 0.6618 1.2481 9 6 6.0750 2.1292 1.2485 10 6 5.5274 2.8230 -0.0004 11 6 3.9995 2.7424 -0.0002 12 1 3.6095 3.2362 -0.8902 13 6 3.4607 3.4249 1.2306 14 8 2.9360 2.7703 2.1064 15 7 3.5618 4.7627 1.3581 16 6 4.1066 5.5641 0.2593 17 6 3.0142 5.8610 -0.7355 18 1 2.0144 5.4896 -0.5665 19 6 3.2916 6.6060 -1.8621 20 7 4.5094 7.0579 -2.0682 21 14 1.9378 6.9735 -3.0955 22 1 0.6678 6.3569 -2.6350 23 1 1.7601 8.4432 -3.2123 24 1 2.3090 6.4131 -4.4197 25 6 3.1271 5.4157 2.5953 26 6 1.6363 5.1510 2.8151 27 6 3.9239 4.8550 3.7750 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 3.8048 -0.4640 1.2483 32 1 3.7243 1.0752 2.1385 33 1 6.0313 0.1681 0.3579 34 1 6.0317 0.1680 2.1381 35 1 7.1634 2.1866 1.2478 36 1 5.6852 2.6228 2.1386 37 1 5.8364 3.8682 -0.0004 38 1 5.9172 2.3293 -0.8907 39 1 4.5030 6.4998 0.6538 40 1 4.9057 5.0100 -0.2331 41 1 4.7046 7.5817 -2.8610 42 1 3.2980 6.4895 2.5190 43 1 1.4805 4.0900 3.0102 44 1 1.2858 5.7324 3.6678 45 1 1.0804 5.4419 1.9238 46 1 4.9803 5.0896 3.6442 47 1 3.5644 5.3025 4.7017 48 1 3.7946 3.7737 3.8196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906481184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:09 Heat of formation + Delta-G solvation = -148.686188 kcal Electronic energy + Delta-G solvation = -29272.203188 eV Core-core repulsion = 25519.294561 eV Total energy + Delta-G solvation = -3752.908627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27329 -40.79872 -38.52430 -37.35540 -36.75177 -35.03637 -33.50684 -32.34934 -31.36261 -28.84052 -28.61543 -28.01578 -25.52218 -24.85734 -23.86245 -22.97817 -21.76778 -21.23882 -19.10899 -18.65071 -18.48819 -17.80832 -17.48227 -17.13303 -16.82264 -16.28414 -16.17382 -15.53758 -15.11194 -14.80132 -14.74576 -14.51853 -14.37184 -14.12914 -13.97855 -13.85766 -13.57761 -13.39246 -13.22371 -13.02149 -12.94727 -12.89333 -12.77675 -12.67082 -12.54907 -12.19911 -12.15753 -12.02096 -11.77058 -11.70314 -11.65483 -11.57869 -11.45377 -10.99930 -10.98505 -10.56141 -9.90736 -9.28304 -8.19995 -6.31615 1.31840 1.32260 1.35727 1.47380 1.81520 2.01304 2.36249 2.49591 3.07808 3.54026 3.66332 3.80789 4.01568 4.17346 4.24030 4.25737 4.27887 4.28093 4.31644 4.34073 4.41154 4.47218 4.54553 4.65436 4.70010 4.73117 4.78517 4.87940 4.93329 4.98340 5.00906 5.08584 5.12553 5.23142 5.26651 5.29819 5.33199 5.36546 5.43071 5.46576 5.51144 5.65422 5.72242 6.03775 6.15404 6.67048 6.85308 6.95143 7.36679 7.62317 8.84441 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.006482 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.879406 B = 4318.827109 C = 4903.559537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.533 6.533 5 C -0.054 4.054 6 H 0.133 0.867 7 C -0.122 4.122 8 C -0.105 4.105 9 C -0.118 4.118 10 C -0.111 4.111 11 C -0.095 4.095 12 H 0.077 0.923 13 C 0.546 3.454 14 O -0.572 6.572 15 N -0.600 5.600 16 C 0.243 3.757 17 C -0.536 4.536 18 H 0.036 0.964 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.943 3.057 22 H -0.285 1.285 23 H -0.274 1.274 24 H -0.272 1.272 25 C 0.137 3.863 26 C -0.147 4.147 27 C -0.149 4.149 28 H 0.139 0.861 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.016 0.984 40 H 0.051 0.949 41 H 0.268 0.732 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.023 0.977 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -13.611 5.818 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.421 6.421 5 C -0.074 4.074 6 H 0.151 0.849 7 C -0.159 4.159 8 C -0.142 4.142 9 C -0.155 4.155 10 C -0.148 4.148 11 C -0.116 4.116 12 H 0.095 0.905 13 C 0.336 3.664 14 O -0.455 6.455 15 N -0.330 5.330 16 C 0.122 3.878 17 C -0.575 4.575 18 H 0.054 0.946 19 C -0.174 4.174 20 N -0.554 5.554 21 Si 0.770 3.230 22 H -0.210 1.210 23 H -0.199 1.199 24 H -0.198 1.198 25 C 0.034 3.966 26 C -0.205 4.205 27 C -0.207 4.207 28 H 0.157 0.843 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.098 0.902 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.585 -13.507 6.149 14.925 hybrid contribution -1.419 1.121 -1.094 2.113 sum 0.166 -12.386 5.055 13.379 Atomic orbital electron populations 1.23435 0.75682 1.05444 1.01637 1.86453 1.24277 1.32747 1.84259 1.24181 0.92919 0.81090 0.71008 1.90713 1.67905 1.37595 1.45883 1.20987 0.85820 0.96514 1.04046 0.84888 1.21854 0.97149 1.00422 0.96462 1.21485 0.93532 0.95615 1.03563 1.21574 1.01237 0.96416 0.96311 1.21681 0.90508 1.02069 1.00590 1.21165 0.98726 0.94099 0.97637 0.90458 1.20137 0.77253 0.81745 0.87254 1.90366 1.46359 1.64533 1.44230 1.48213 1.61983 1.06494 1.16345 1.19364 0.93929 0.90591 0.83939 1.21665 0.96075 1.33192 1.06549 0.94597 1.25478 0.97330 0.95396 0.99154 1.69980 1.20069 1.36745 1.28653 0.85730 0.79632 0.78139 0.79523 1.21040 1.19899 1.19755 1.21033 0.94311 0.96691 0.84589 1.22001 0.95695 1.02369 1.00482 1.22037 0.99323 1.02282 0.97058 0.84341 0.93335 0.92760 0.89988 0.90074 0.89782 0.90112 0.89665 0.94078 0.91529 0.88869 0.96588 0.93140 0.92300 0.90599 0.92470 0.90372 0.95725 0.92739 0.90164 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.36 -11.01 10.47 -51.43 -0.54 -11.55 16 3 C 0.46 17.11 6.36 71.24 0.45 17.57 16 4 O -0.53 -24.57 14.16 27.97 0.40 -24.18 16 5 C -0.05 -1.71 2.38 -11.54 -0.03 -1.74 16 6 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 7 C -0.12 -3.27 4.87 30.59 0.15 -3.12 16 8 C -0.10 -2.23 5.92 30.60 0.18 -2.05 16 9 C -0.12 -3.03 5.70 30.60 0.17 -2.85 16 10 C -0.11 -3.45 5.15 30.59 0.16 -3.29 16 11 C -0.09 -3.57 1.38 -11.54 -0.02 -3.59 16 12 H 0.08 3.50 7.08 -2.39 -0.02 3.48 16 13 C 0.55 22.93 3.64 87.66 0.32 23.24 16 14 O -0.57 -24.49 8.38 14.46 0.12 -24.37 16 15 N -0.60 -26.47 2.42 -802.14 -1.94 -28.41 16 16 C 0.24 12.02 4.77 85.63 0.41 12.43 16 17 C -0.54 -29.87 8.64 25.60 0.22 -29.65 16 18 H 0.04 2.17 7.81 -2.91 -0.02 2.15 16 19 C 0.03 1.46 5.46 84.66 0.46 1.93 16 20 N -0.91 -51.10 13.29 21.45 0.28 -50.81 16 21 Si 0.94 44.57 29.54 68.60 2.03 46.60 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 25 C 0.14 5.37 3.28 44.99 0.15 5.52 16 26 C -0.15 -5.79 9.01 71.98 0.65 -5.14 16 27 C -0.15 -4.82 9.15 71.98 0.66 -4.16 16 28 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 1.32 8.13 -2.38 -0.02 1.30 16 30 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.08 1.90 8.11 -2.39 -0.02 1.88 16 32 H 0.08 2.72 5.20 -2.38 -0.01 2.71 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.24 7.22 -2.39 -0.02 1.23 16 37 H 0.07 2.40 5.33 -2.39 -0.01 2.38 16 38 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.02 0.84 7.79 -2.39 -0.02 0.82 16 40 H 0.05 2.49 4.26 -2.39 -0.01 2.48 16 41 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.08 2.97 7.71 -2.38 -0.02 2.95 16 43 H 0.06 2.41 6.31 -2.38 -0.02 2.40 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.06 2.14 6.19 -2.39 -0.01 2.12 16 Total: -1.00 -68.30 364.84 6.42 -61.88 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.94 Total: 23.78 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.13 Total: 7.07 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -1.66 Total: -79.23 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: -0.02 Total: -60.10 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -68.30 6.42 -61.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906481184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.809 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds