Wall clock time and date at job start Fri Apr 10 2020 22:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52990 * 109.47419 * 2 1 4 4 C 1.50702 * 109.46796 * 120.00268 * 2 1 3 5 5 O 1.21284 * 119.99634 * 264.76220 * 4 2 1 6 6 N 1.34774 * 120.00065 * 84.76009 * 4 2 1 7 7 C 1.46926 * 120.63514 * 354.92144 * 6 4 2 8 8 C 1.53191 * 108.89277 * 126.45976 * 7 6 4 9 9 C 1.53035 * 109.31388 * 54.56481 * 8 7 6 10 10 C 1.50700 * 109.46206 * 178.62642 * 9 8 7 11 11 O 1.20829 * 119.99844 * 0.02562 * 10 9 8 12 12 O 1.34230 * 120.00130 * 180.02562 * 10 9 8 13 13 C 1.45201 * 117.00006 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47090 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47100 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.47318 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99532 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00113 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99872 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47502 * 59.99647 * 20 18 16 22 22 H 1.48500 * 109.47434 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47233 * 299.99816 * 20 18 16 24 24 C 1.53038 * 109.54230 * 298.63558 * 9 8 7 25 25 C 1.46964 * 120.65218 * 174.73491 * 6 4 2 26 26 H 1.09000 * 109.46822 * 300.80133 * 1 2 3 27 27 H 1.09003 * 109.46584 * 60.79951 * 1 2 3 28 28 H 1.09005 * 109.47183 * 180.79840 * 1 2 3 29 29 H 1.09002 * 109.46849 * 239.99407 * 2 1 3 30 30 H 1.08996 * 109.47671 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47278 * 300.00381 * 3 2 1 32 32 H 1.09006 * 109.47277 * 59.99491 * 3 2 1 33 33 H 1.09004 * 109.57988 * 6.60172 * 7 6 4 34 34 H 1.09002 * 109.58724 * 246.32003 * 7 6 4 35 35 H 1.09002 * 109.49479 * 174.52077 * 8 7 6 36 36 H 1.08998 * 109.49685 * 294.57991 * 8 7 6 37 37 H 1.09004 * 109.46224 * 58.65352 * 9 8 7 38 38 H 1.08998 * 109.47107 * 300.00416 * 13 12 10 39 39 H 1.09007 * 109.47028 * 59.99641 * 13 12 10 40 40 H 1.08996 * 109.47201 * 300.00248 * 14 13 12 41 41 H 1.08999 * 109.47498 * 60.00207 * 14 13 12 42 42 H 1.09008 * 109.46887 * 299.99827 * 15 14 13 43 43 H 1.08994 * 109.47155 * 60.00093 * 15 14 13 44 44 H 0.96999 * 120.00054 * 179.97438 * 19 18 16 45 45 H 1.08995 * 109.50061 * 181.31630 * 24 9 8 46 46 H 1.08999 * 109.49738 * 301.38279 * 24 9 8 47 47 H 1.08998 * 109.46543 * 113.75188 * 25 6 4 48 48 H 1.09006 * 109.71315 * 353.47179 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3248 -0.0745 2.2209 6 7 2.1564 -2.0525 1.2303 7 6 1.7026 -2.8462 0.0801 8 6 2.8551 -3.7376 -0.3931 9 6 3.3657 -4.5720 0.7838 10 6 4.4773 -5.4748 0.3143 11 8 4.8256 -5.4529 -0.8424 12 8 5.0804 -6.3033 1.1813 13 6 6.1425 -7.1446 0.6591 14 6 6.7057 -8.0130 1.7857 15 6 7.8253 -8.8990 1.2355 16 6 8.3797 -9.7549 2.3451 17 1 7.9744 -9.6746 3.3430 18 6 9.4044 -10.6404 2.0864 19 7 9.8976 -10.7385 0.8711 20 14 10.0921 -11.7008 3.4618 21 1 9.0111 -12.5550 4.0161 22 1 11.1786 -12.5608 2.9280 23 1 10.6337 -10.8291 4.5353 24 6 3.8926 -3.6427 1.8797 25 6 2.7519 -2.7501 2.3786 26 1 -0.3633 0.5262 0.8827 27 1 -0.3632 0.5014 -0.8971 28 1 -0.3634 -1.0276 0.0143 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.4010 -2.1793 -0.7277 34 1 0.8574 -3.4678 0.3757 35 1 2.5015 -4.4005 -1.1829 36 1 3.6634 -3.1146 -0.7759 37 1 2.5504 -5.1764 1.1813 38 1 5.7452 -7.7840 -0.1292 39 1 6.9361 -6.5175 0.2527 40 1 7.1031 -7.3732 2.5736 41 1 5.9124 -8.6401 2.1924 42 1 7.4282 -9.5388 0.4474 43 1 8.6186 -8.2717 0.8291 44 1 10.6187 -11.3612 0.6892 45 1 4.2775 -4.2380 2.7076 46 1 4.6918 -3.0209 1.4762 47 1 1.9932 -3.3639 2.8640 48 1 3.1421 -2.0215 3.0894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914621516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:12 Heat of formation + Delta-G solvation = -174.477035 kcal Electronic energy + Delta-G solvation = -25738.313944 eV Core-core repulsion = 21984.286943 eV Total energy + Delta-G solvation = -3754.027002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.91564 -41.13953 -38.67036 -37.68289 -35.95191 -35.59720 -34.14127 -33.57709 -32.11052 -29.22794 -28.07327 -27.58867 -25.33569 -24.83193 -23.90661 -22.45070 -22.17922 -21.15958 -19.76776 -18.84238 -18.62295 -18.30341 -17.68585 -17.22563 -16.87251 -16.50675 -16.38292 -15.84347 -15.30452 -15.06835 -14.98898 -14.87067 -14.58120 -14.21052 -14.12967 -13.82163 -13.66654 -13.55599 -13.31492 -13.13517 -13.01100 -12.86541 -12.80430 -12.53976 -12.40978 -12.32650 -12.08116 -12.06566 -11.97836 -11.86549 -11.75926 -11.67195 -11.41822 -11.37639 -11.20228 -10.67097 -10.57709 -9.72950 -8.22586 -6.34292 1.11922 1.40907 1.44166 1.51778 1.56386 1.65686 1.98837 2.40745 3.11140 3.40702 3.44218 3.64335 3.69954 3.92954 3.97574 3.98237 4.04446 4.08995 4.09521 4.26181 4.29024 4.38580 4.43666 4.62708 4.65961 4.72725 4.77785 4.78284 4.80169 4.86969 4.87988 4.90984 4.96422 5.03041 5.06562 5.08323 5.21358 5.30002 5.33125 5.42233 5.51325 5.52543 5.62275 5.78889 6.17913 6.36274 6.67067 6.81514 7.14356 7.35229 8.89313 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.034835 B = 0.001990 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.593848 B =14069.837097 C =14410.593331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.135 4.135 4 C 0.512 3.488 5 O -0.588 6.588 6 N -0.614 5.614 7 C 0.108 3.892 8 C -0.118 4.118 9 C -0.072 4.072 10 C 0.457 3.543 11 O -0.541 6.541 12 O -0.356 6.356 13 C 0.078 3.922 14 C -0.093 4.093 15 C 0.025 3.975 16 C -0.544 4.544 17 H 0.065 0.935 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.266 1.266 24 C -0.120 4.120 25 C 0.116 3.884 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.140 0.860 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.068 0.932 42 H -0.003 1.003 43 H -0.005 1.005 44 H 0.264 0.736 45 H 0.096 0.904 46 H 0.055 0.945 47 H 0.095 0.905 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.565 20.625 -2.771 31.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C -0.193 4.193 4 C 0.302 3.698 5 O -0.468 6.468 6 N -0.346 5.346 7 C -0.013 4.013 8 C -0.156 4.156 9 C -0.091 4.091 10 C 0.302 3.698 11 O -0.431 6.431 12 O -0.272 6.272 13 C 0.005 3.995 14 C -0.131 4.131 15 C -0.012 4.012 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.159 4.159 25 C -0.007 4.007 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.158 0.842 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.073 0.927 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.113 0.887 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.156 20.840 -2.687 31.269 hybrid contribution 1.301 -0.864 0.246 1.581 sum -21.856 19.976 -2.441 29.710 Atomic orbital electron populations 1.21783 0.90899 1.03548 1.03421 1.21430 0.99143 0.97372 0.95635 1.21658 1.00578 0.94266 1.02806 1.21365 0.76469 0.81885 0.90040 1.90669 1.52371 1.66566 1.37178 1.48341 1.60830 1.06011 1.19463 1.22081 0.96141 0.94690 0.88418 1.21857 0.99075 0.98339 0.96337 1.21222 0.94355 0.94859 0.98626 1.24538 0.82739 0.78685 0.83831 1.90650 1.64221 1.67386 1.20831 1.86485 1.48121 1.49656 1.42957 1.23096 0.87207 0.91657 0.97586 1.21447 0.98187 0.96854 0.96619 1.18937 0.92686 0.93699 0.95853 1.21598 1.18446 1.21745 0.96407 0.91638 1.26021 0.97012 0.98669 0.98285 1.70094 1.27348 1.37945 1.21930 0.85438 0.78022 0.78425 0.78790 1.18965 1.20945 1.19128 1.21862 0.98357 0.97343 0.98294 1.21574 0.95362 0.95373 0.88360 0.93327 0.89245 0.90749 0.86665 0.93745 0.89486 0.93246 0.86555 0.87986 0.88613 0.92069 0.84218 0.91871 0.92365 0.91599 0.91300 0.98457 0.98673 0.92682 0.88599 0.92587 0.88686 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.98 71.98 0.65 -0.33 16 2 C -0.11 -1.26 2.39 -11.54 -0.03 -1.29 16 3 C -0.14 -1.74 8.72 71.98 0.63 -1.12 16 4 C 0.51 9.32 6.80 87.66 0.60 9.91 16 5 O -0.59 -16.05 15.54 -3.04 -0.05 -16.10 16 6 N -0.61 -8.63 2.98 -818.80 -2.44 -11.07 16 7 C 0.11 0.83 5.81 86.36 0.50 1.33 16 8 C -0.12 -1.53 4.65 30.67 0.14 -1.39 16 9 C -0.07 -1.18 2.59 -11.52 -0.03 -1.21 16 10 C 0.46 12.38 7.25 71.24 0.52 12.89 16 11 O -0.54 -18.01 15.73 21.96 0.35 -17.67 16 12 O -0.36 -10.99 10.10 -51.42 -0.52 -11.50 16 13 C 0.08 2.85 5.47 71.98 0.39 3.24 16 14 C -0.09 -3.83 5.53 30.59 0.17 -3.66 16 15 C 0.03 1.33 4.97 29.85 0.15 1.48 16 16 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 17 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 19 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 20 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 C -0.12 -2.00 5.30 30.67 0.16 -1.83 16 25 C 0.12 1.73 6.41 86.35 0.55 2.28 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.07 0.33 7.33 -2.38 -0.02 0.31 16 29 H 0.12 0.78 6.50 -2.39 -0.02 0.76 16 30 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.81 7.87 -2.38 -0.02 0.79 16 33 H 0.12 0.42 5.09 -2.38 -0.01 0.41 16 34 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 36 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 37 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 39 H 0.06 2.20 8.13 -2.38 -0.02 2.18 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 43 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 45 H 0.10 1.59 8.08 -2.39 -0.02 1.58 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.08 1.53 7.05 -2.38 -0.02 1.52 16 Total: -1.00 -75.15 386.09 5.66 -69.48 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.92 Total: 7.17 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.10 Total: -9.77 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -2.16 Total: -67.51 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.22 Total: -45.27 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -75.15 5.66 -69.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914621516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.992 kcal (2) G-P(sol) polarization free energy of solvation -75.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds