Wall clock time and date at job start Fri Apr 10 2020 22:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 C 1.52999 * 109.47080 * 240.00449 * 2 1 3 5 5 C 1.50694 * 109.47214 * 120.00119 * 2 1 3 6 6 O 1.21280 * 119.99969 * 353.76028 * 5 2 1 7 7 N 1.34780 * 119.99877 * 173.75901 * 5 2 1 8 8 C 1.47422 * 125.65166 * 354.95161 * 7 5 2 9 9 C 1.54907 * 104.83232 * 155.83438 * 8 7 5 10 10 C 1.55546 * 101.59945 * 37.04245 * 9 8 7 11 11 C 1.47025 * 125.64492 * 174.90297 * 7 5 2 12 12 H 1.08991 * 109.88696 * 300.51828 * 11 7 5 13 13 C 1.50704 * 109.88147 * 61.52766 * 11 7 5 14 14 O 1.20822 * 119.99900 * 359.68275 * 13 11 7 15 15 O 1.34230 * 119.99985 * 179.68003 * 13 11 7 16 16 C 1.45195 * 117.00030 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.47385 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47310 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47369 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99430 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46932 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47130 * 119.99739 * 23 21 19 26 26 H 1.48496 * 109.47242 * 240.00210 * 23 21 19 27 27 H 1.09000 * 109.46885 * 299.99877 * 1 2 3 28 28 H 1.09002 * 109.47169 * 59.99861 * 1 2 3 29 29 H 1.08993 * 109.47114 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47171 * 172.27704 * 3 2 1 31 31 H 1.08999 * 109.47145 * 292.28021 * 3 2 1 32 32 H 1.09000 * 109.46957 * 52.28185 * 3 2 1 33 33 H 1.09006 * 109.46881 * 299.99479 * 4 2 1 34 34 H 1.09002 * 109.47373 * 59.99814 * 4 2 1 35 35 H 1.09002 * 109.47323 * 180.02562 * 4 2 1 36 36 H 1.09007 * 110.36232 * 274.67257 * 8 7 5 37 37 H 1.08993 * 110.36404 * 36.99310 * 8 7 5 38 38 H 1.09004 * 111.00148 * 155.08159 * 9 8 7 39 39 H 1.08999 * 111.00393 * 278.89226 * 9 8 7 40 40 H 1.08996 * 110.83098 * 206.15090 * 10 9 8 41 41 H 1.09005 * 110.77817 * 82.76053 * 10 9 8 42 42 H 1.09000 * 109.47265 * 300.00192 * 16 15 13 43 43 H 1.09005 * 109.47073 * 59.99974 * 16 15 13 44 44 H 1.09000 * 109.47008 * 300.00266 * 17 16 15 45 45 H 1.09002 * 109.46676 * 60.00183 * 17 16 15 46 46 H 1.09000 * 109.47228 * 300.00040 * 18 17 16 47 47 H 1.09005 * 109.47185 * 59.99868 * 18 17 16 48 48 H 0.97001 * 119.99568 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2501 -1.0714 2.0840 7 7 3.3509 -0.9446 1.3822 8 6 4.3954 -0.6567 0.3825 9 6 5.6993 -0.5020 1.2045 10 6 5.5049 -1.5833 2.3056 11 6 3.9860 -1.5286 2.5727 12 1 3.7850 -0.9049 3.4437 13 6 3.4561 -2.9200 2.8057 14 8 2.6259 -3.3830 2.0600 15 8 3.9066 -3.6450 3.8417 16 6 3.3515 -4.9766 4.0053 17 6 3.9804 -5.6445 5.2298 18 6 3.3959 -7.0479 5.4018 19 6 4.0148 -7.7055 6.6083 20 1 4.7517 -7.1755 7.1936 21 6 3.6412 -8.9840 6.9643 22 7 2.7442 -9.6295 6.2512 23 14 4.4089 -9.7993 8.4594 24 1 5.3822 -8.8688 9.0854 25 1 3.3458 -10.1362 9.4400 26 1 5.1085 -11.0407 8.0416 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1212 1.4456 0.1381 31 1 1.7938 1.9149 -0.9509 32 1 1.5684 1.9946 0.8129 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 4.4861 -1.4847 -0.3206 37 1 4.1688 0.2686 -0.1471 38 1 6.5748 -0.7209 0.5931 39 1 5.7697 0.4940 1.6416 40 1 6.0642 -1.3256 3.2049 41 1 5.7966 -2.5669 1.9374 42 1 2.2727 -4.9060 4.1443 43 1 3.5653 -5.5710 3.1169 44 1 5.0592 -5.7150 5.0913 45 1 3.7661 -5.0499 6.1180 46 1 2.3170 -6.9778 5.5402 47 1 3.6104 -7.6422 4.5135 48 1 2.4811 -10.5289 6.5019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915012773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:14 Heat of formation + Delta-G solvation = -133.573548 kcal Electronic energy + Delta-G solvation = -26694.170284 eV Core-core repulsion = 22941.916990 eV Total energy + Delta-G solvation = -3752.253293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20078 -39.72983 -37.75786 -36.31764 -35.82023 -33.95651 -31.93581 -31.64319 -30.21507 -27.75592 -27.44940 -26.95539 -25.15567 -23.59689 -22.25982 -21.98622 -20.52325 -20.27336 -19.02925 -17.81355 -16.98164 -16.65903 -16.20452 -16.11299 -15.86937 -15.07628 -14.87086 -14.45924 -14.38042 -14.11627 -14.03953 -13.76360 -13.35026 -13.24920 -12.72333 -12.53446 -12.47433 -12.32836 -12.13303 -12.04215 -11.99204 -11.85400 -11.76648 -11.72481 -11.28176 -11.24153 -10.96247 -10.88811 -10.61807 -10.58183 -10.31882 -10.26388 -9.79874 -9.68011 -9.51299 -9.13759 -8.93417 -8.37180 -6.01547 -4.04508 2.31400 2.43523 2.61412 3.11910 3.31304 3.38539 3.42992 3.97817 4.06845 4.25230 4.44649 4.46299 4.49470 4.58567 4.78934 4.81837 4.91446 4.96523 5.11662 5.23678 5.25897 5.34378 5.35668 5.37768 5.40802 5.48332 5.51568 5.59147 5.62777 5.63442 5.69732 5.70632 5.76140 5.89657 5.92541 6.06628 6.08607 6.56019 6.58196 6.91099 7.02593 7.22817 7.63227 7.74382 7.96211 7.97432 8.10149 8.38344 9.02062 9.59649 11.10022 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.002496 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.293978 B =11217.126058 C =11880.639811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.145 4.145 4 C -0.156 4.156 5 C 0.543 3.457 6 O -0.517 6.517 7 N -0.605 5.605 8 C 0.089 3.911 9 C -0.134 4.134 10 C -0.118 4.118 11 C 0.146 3.854 12 H 0.111 0.889 13 C 0.446 3.554 14 O -0.491 6.491 15 O -0.358 6.358 16 C 0.070 3.930 17 C -0.107 4.107 18 C 0.023 3.977 19 C -0.520 4.520 20 H 0.058 0.942 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.952 25.658 -16.904 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.202 4.202 4 C -0.213 4.213 5 C 0.332 3.668 6 O -0.390 6.390 7 N -0.342 5.342 8 C -0.033 4.033 9 C -0.172 4.172 10 C -0.156 4.156 11 C 0.040 3.960 12 H 0.129 0.871 13 C 0.286 3.714 14 O -0.378 6.378 15 O -0.275 6.275 16 C -0.003 4.003 17 C -0.145 4.145 18 C -0.014 4.014 19 C -0.558 4.558 20 H 0.076 0.924 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.047 25.119 -16.663 30.414 hybrid contribution 0.161 -0.852 0.751 1.147 sum 4.207 24.267 -15.912 29.322 Atomic orbital electron populations 1.21677 0.91713 1.03125 1.02039 1.20727 0.98071 0.96129 0.93300 1.21989 1.01457 0.93709 1.03039 1.22200 1.02294 1.01048 0.95784 1.20325 0.79915 0.78428 0.88121 1.90742 1.53969 1.50309 1.43990 1.48281 1.06524 1.62527 1.16838 1.22774 0.86948 1.01790 0.91747 1.22937 0.97320 0.99711 0.97246 1.22681 0.91244 1.00832 1.00850 1.21094 0.93975 0.89610 0.91330 0.87094 1.23745 0.80073 0.88379 0.79192 1.90660 1.29918 1.71338 1.45842 1.86465 1.64003 1.30207 1.46793 1.23471 0.98503 0.77661 1.00659 1.21751 1.00252 0.98551 0.93938 1.19058 0.96479 0.88458 0.97391 1.21210 1.23591 0.99579 1.11418 0.92370 1.25042 0.95159 0.97372 0.96986 1.69984 1.31548 1.12598 1.39250 0.86487 0.79154 0.79340 0.82741 1.19665 1.20974 1.20981 0.91793 0.91943 0.91819 0.91678 0.91196 0.91887 0.91805 0.91418 0.91052 0.90737 0.88957 0.89073 0.89912 0.88166 0.89661 0.91633 0.91755 0.92194 0.92153 0.96238 0.96281 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 7.78 37.16 0.29 -0.96 16 2 C -0.08 -0.73 0.75 -155.66 -0.12 -0.85 16 3 C -0.14 -0.91 8.28 37.16 0.31 -0.60 16 4 C -0.16 -1.19 8.13 37.16 0.30 -0.89 16 5 C 0.54 7.25 5.85 -10.99 -0.06 7.18 16 6 O -0.52 -9.40 14.97 -11.86 -0.18 -9.58 16 7 N -0.61 -6.74 2.83 -164.33 -0.47 -7.21 16 8 C 0.09 0.60 4.75 -2.53 -0.01 0.59 16 9 C -0.13 -0.67 7.10 -24.37 -0.17 -0.84 16 10 C -0.12 -0.93 6.47 -24.69 -0.16 -1.09 16 11 C 0.15 1.74 3.39 -68.10 -0.23 1.51 16 12 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 13 C 0.45 7.56 6.74 36.01 0.24 7.80 16 14 O -0.49 -9.98 14.62 -24.79 -0.36 -10.35 16 15 O -0.36 -6.41 10.19 -39.26 -0.40 -6.81 16 16 C 0.07 1.40 5.47 37.16 0.20 1.60 16 17 C -0.11 -2.32 5.53 -26.73 -0.15 -2.47 16 18 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 19 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 23 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 27 H 0.06 0.67 8.03 -51.93 -0.42 0.26 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.34 5.34 -51.93 -0.28 0.06 16 31 H 0.07 0.32 8.13 -51.93 -0.42 -0.10 16 32 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.44 4.10 -51.93 -0.21 0.23 16 36 H 0.07 0.51 7.34 -51.93 -0.38 0.13 16 37 H 0.09 0.42 4.34 -51.93 -0.23 0.20 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 42 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 43 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -36.41 379.83 -8.30 -44.71 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -8.22 Total: -4.46 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.11 Total: -2.27 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.27 Total: -33.82 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.94 Total: -26.73 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.41 -8.30 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915012773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.861 kcal (2) G-P(sol) polarization free energy of solvation -36.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds