Wall clock time and date at job start Fri Apr 10 2020 22:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 C 1.52999 * 109.47080 * 240.00449 * 2 1 3 5 5 C 1.50694 * 109.47214 * 120.00119 * 2 1 3 6 6 O 1.21280 * 119.99969 * 353.76028 * 5 2 1 7 7 N 1.34780 * 119.99877 * 173.75901 * 5 2 1 8 8 C 1.47422 * 125.65166 * 354.95161 * 7 5 2 9 9 C 1.54907 * 104.83232 * 155.83438 * 8 7 5 10 10 C 1.55546 * 101.59945 * 37.04245 * 9 8 7 11 11 C 1.47025 * 125.64492 * 174.90297 * 7 5 2 12 12 H 1.08991 * 109.88696 * 300.51828 * 11 7 5 13 13 C 1.50704 * 109.88147 * 61.52766 * 11 7 5 14 14 O 1.20822 * 119.99900 * 359.68275 * 13 11 7 15 15 O 1.34230 * 119.99985 * 179.68003 * 13 11 7 16 16 C 1.45195 * 117.00030 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.47385 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47310 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47369 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99430 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46932 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47130 * 119.99739 * 23 21 19 26 26 H 1.48496 * 109.47242 * 240.00210 * 23 21 19 27 27 H 1.09000 * 109.46885 * 299.99877 * 1 2 3 28 28 H 1.09002 * 109.47169 * 59.99861 * 1 2 3 29 29 H 1.08993 * 109.47114 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47171 * 172.27704 * 3 2 1 31 31 H 1.08999 * 109.47145 * 292.28021 * 3 2 1 32 32 H 1.09000 * 109.46957 * 52.28185 * 3 2 1 33 33 H 1.09006 * 109.46881 * 299.99479 * 4 2 1 34 34 H 1.09002 * 109.47373 * 59.99814 * 4 2 1 35 35 H 1.09002 * 109.47323 * 180.02562 * 4 2 1 36 36 H 1.09007 * 110.36232 * 274.67257 * 8 7 5 37 37 H 1.08993 * 110.36404 * 36.99310 * 8 7 5 38 38 H 1.09004 * 111.00148 * 155.08159 * 9 8 7 39 39 H 1.08999 * 111.00393 * 278.89226 * 9 8 7 40 40 H 1.08996 * 110.83098 * 206.15090 * 10 9 8 41 41 H 1.09005 * 110.77817 * 82.76053 * 10 9 8 42 42 H 1.09000 * 109.47265 * 300.00192 * 16 15 13 43 43 H 1.09005 * 109.47073 * 59.99974 * 16 15 13 44 44 H 1.09000 * 109.47008 * 300.00266 * 17 16 15 45 45 H 1.09002 * 109.46676 * 60.00183 * 17 16 15 46 46 H 1.09000 * 109.47228 * 300.00040 * 18 17 16 47 47 H 1.09005 * 109.47185 * 59.99868 * 18 17 16 48 48 H 0.97001 * 119.99568 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2501 -1.0714 2.0840 7 7 3.3509 -0.9446 1.3822 8 6 4.3954 -0.6567 0.3825 9 6 5.6993 -0.5020 1.2045 10 6 5.5049 -1.5833 2.3056 11 6 3.9860 -1.5286 2.5727 12 1 3.7850 -0.9049 3.4437 13 6 3.4561 -2.9200 2.8057 14 8 2.6259 -3.3830 2.0600 15 8 3.9066 -3.6450 3.8417 16 6 3.3515 -4.9766 4.0053 17 6 3.9804 -5.6445 5.2298 18 6 3.3959 -7.0479 5.4018 19 6 4.0148 -7.7055 6.6083 20 1 4.7517 -7.1755 7.1936 21 6 3.6412 -8.9840 6.9643 22 7 2.7442 -9.6295 6.2512 23 14 4.4089 -9.7993 8.4594 24 1 5.3822 -8.8688 9.0854 25 1 3.3458 -10.1362 9.4400 26 1 5.1085 -11.0407 8.0416 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1212 1.4456 0.1381 31 1 1.7938 1.9149 -0.9509 32 1 1.5684 1.9946 0.8129 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 4.4861 -1.4847 -0.3206 37 1 4.1688 0.2686 -0.1471 38 1 6.5748 -0.7209 0.5931 39 1 5.7697 0.4940 1.6416 40 1 6.0642 -1.3256 3.2049 41 1 5.7966 -2.5669 1.9374 42 1 2.2727 -4.9060 4.1443 43 1 3.5653 -5.5710 3.1169 44 1 5.0592 -5.7150 5.0913 45 1 3.7661 -5.0499 6.1180 46 1 2.3170 -6.9778 5.5402 47 1 3.6104 -7.6422 4.5135 48 1 2.4811 -10.5289 6.5019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915012773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:14 Heat of formation + Delta-G solvation = -155.683548 kcal Electronic energy + Delta-G solvation = -26695.129045 eV Core-core repulsion = 22941.916990 eV Total energy + Delta-G solvation = -3753.212055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.24281 -40.98660 -38.67126 -37.74896 -36.74131 -35.98737 -33.76612 -32.60399 -31.10501 -29.00310 -28.28195 -28.06963 -26.06191 -25.32969 -23.53999 -22.55468 -22.23583 -21.49855 -19.97953 -19.04900 -18.57915 -17.96621 -17.72645 -17.38003 -16.94065 -16.51046 -15.98125 -15.75492 -15.69319 -14.97565 -14.78093 -14.74712 -14.51744 -14.15781 -14.05404 -13.88779 -13.81546 -13.51367 -13.16892 -13.02030 -12.92768 -12.83711 -12.82620 -12.60586 -12.53661 -12.39797 -12.36703 -12.13635 -11.95832 -11.90007 -11.69967 -11.49634 -11.46317 -11.40175 -11.24173 -10.77104 -10.61628 -9.89509 -8.24709 -6.37039 1.07792 1.22885 1.39762 1.40599 1.54427 1.70258 1.96794 2.39399 3.09082 3.27269 3.38636 3.53702 3.68542 3.80495 3.88601 3.89571 3.98206 3.99846 4.12169 4.23233 4.31329 4.42924 4.51595 4.64989 4.71157 4.72412 4.73977 4.78046 4.80499 4.84590 4.89735 4.92631 5.01742 5.03447 5.06222 5.16470 5.18232 5.28417 5.29995 5.35348 5.38548 5.46305 5.57298 5.75782 6.14664 6.35483 6.62795 6.79010 7.07810 7.32821 8.88116 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.002496 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.293978 B =11217.126058 C =11880.639811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.152 4.152 5 C 0.530 3.470 6 O -0.582 6.582 7 N -0.605 5.605 8 C 0.078 3.922 9 C -0.118 4.118 10 C -0.114 4.114 11 C 0.142 3.858 12 H 0.117 0.883 13 C 0.439 3.561 14 O -0.532 6.532 15 O -0.353 6.353 16 C 0.080 3.920 17 C -0.090 4.090 18 C 0.025 3.975 19 C -0.541 4.541 20 H 0.068 0.932 21 C -0.004 4.004 22 N -0.936 5.936 23 Si 0.973 3.027 24 H -0.258 1.258 25 H -0.279 1.279 26 H -0.276 1.276 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.031 0.969 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.065 0.935 46 H -0.009 1.009 47 H -0.003 1.003 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 28.165 -17.635 34.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.081 4.081 3 C -0.195 4.195 4 C -0.209 4.209 5 C 0.321 3.679 6 O -0.460 6.460 7 N -0.340 5.340 8 C -0.042 4.042 9 C -0.155 4.155 10 C -0.152 4.152 11 C 0.036 3.964 12 H 0.135 0.865 13 C 0.282 3.718 14 O -0.421 6.421 15 O -0.269 6.269 16 C 0.007 3.993 17 C -0.127 4.127 18 C -0.012 4.012 19 C -0.579 4.579 20 H 0.086 0.914 21 C -0.202 4.202 22 N -0.576 5.576 23 Si 0.797 3.203 24 H -0.181 1.181 25 H -0.205 1.205 26 H -0.202 1.202 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.009 0.991 47 H 0.015 0.985 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.127 27.663 -17.425 33.461 hybrid contribution -0.829 -1.624 0.924 2.045 sum 6.297 26.038 -16.501 31.463 Atomic orbital electron populations 1.21687 0.92721 1.01311 1.02795 1.20831 0.97377 0.97955 0.91913 1.21989 1.02277 0.91007 1.04245 1.22215 1.03446 0.99339 0.95917 1.21260 0.80234 0.77827 0.88613 1.90703 1.55814 1.53087 1.46407 1.48512 1.06828 1.61075 1.17547 1.23161 0.86589 1.03154 0.91304 1.22987 0.97044 0.99554 0.95935 1.22783 0.87726 1.01700 1.03032 1.21454 0.96635 0.85892 0.92398 0.86514 1.25022 0.79157 0.89824 0.77840 1.90645 1.31752 1.72518 1.47139 1.86463 1.63781 1.29065 1.47635 1.23076 0.97315 0.79094 0.99855 1.21444 1.00656 0.95822 0.94805 1.18943 0.94955 0.91128 0.96152 1.21635 1.23952 1.00245 1.12094 0.91400 1.26079 0.95529 0.98120 1.00442 1.70125 1.33010 1.13162 1.41315 0.85277 0.78398 0.78320 0.78315 1.18132 1.20474 1.20189 0.93312 0.88773 0.94943 0.89987 0.88469 0.92776 0.94866 0.88595 0.89215 0.90756 0.86042 0.86341 0.87850 0.86163 0.90681 0.93471 0.92107 0.90732 0.91591 0.99095 0.98504 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 7.78 71.98 0.56 -2.00 16 2 C -0.08 -1.37 0.75 -52.93 -0.04 -1.41 16 3 C -0.14 -1.32 8.28 71.98 0.60 -0.73 16 4 C -0.15 -2.06 8.13 71.98 0.59 -1.48 16 5 C 0.53 14.46 5.85 87.65 0.51 14.98 16 6 O -0.58 -22.73 14.97 13.63 0.20 -22.53 16 7 N -0.61 -12.96 2.83 -792.21 -2.24 -15.20 16 8 C 0.08 0.80 4.75 86.85 0.41 1.21 16 9 C -0.12 -0.66 7.10 32.12 0.23 -0.43 16 10 C -0.11 -1.51 6.47 31.92 0.21 -1.31 16 11 C 0.14 3.31 3.39 44.59 0.15 3.46 16 12 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 13 C 0.44 15.39 6.74 71.24 0.48 15.87 16 14 O -0.53 -22.95 14.62 27.76 0.41 -22.54 16 15 O -0.35 -12.92 10.19 -51.42 -0.52 -13.44 16 16 C 0.08 3.36 5.47 71.98 0.39 3.75 16 17 C -0.09 -3.96 5.53 30.59 0.17 -3.79 16 18 C 0.03 1.41 4.97 29.85 0.15 1.55 16 19 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 20 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 21 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 22 N -0.94 -58.55 13.29 21.45 0.28 -58.27 16 23 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H 0.05 1.10 8.03 -2.39 -0.02 1.08 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.50 5.34 -2.39 -0.01 0.48 16 31 H 0.10 0.45 8.13 -2.39 -0.02 0.43 16 32 H 0.05 0.64 8.13 -2.39 -0.02 0.62 16 33 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.85 4.10 -2.39 -0.01 0.84 16 36 H 0.07 0.81 7.34 -2.38 -0.02 0.79 16 37 H 0.12 0.54 4.34 -2.39 -0.01 0.53 16 38 H 0.12 0.14 8.14 -2.38 -0.02 0.12 16 39 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.18 7.85 -2.38 -0.02 1.16 16 42 H 0.05 2.12 8.13 -2.39 -0.02 2.10 16 43 H 0.06 2.55 8.13 -2.38 -0.02 2.54 16 44 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 46 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 47 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 48 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -85.18 379.83 6.18 -78.99 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.93 Total: 7.45 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.10 Total: -1.34 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.96 Total: -73.47 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: 0.09 Total: -58.51 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -85.18 6.18 -78.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915012773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.691 kcal (2) G-P(sol) polarization free energy of solvation -85.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds