Wall clock time and date at job start Fri Apr 10 2020 22:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47271 * 2 1 4 4 C 1.52996 * 109.47279 * 239.99949 * 2 1 3 5 5 C 1.50705 * 109.47056 * 120.00092 * 2 1 3 6 6 O 1.21271 * 119.99868 * 9.94101 * 5 2 1 7 7 N 1.34776 * 119.99868 * 189.94094 * 5 2 1 8 8 C 1.47426 * 125.64979 * 355.59566 * 7 5 2 9 9 C 1.55388 * 104.87535 * 204.16660 * 8 7 5 10 10 C 1.55161 * 101.36364 * 323.01887 * 9 8 7 11 11 C 1.47020 * 125.64623 * 175.63547 * 7 5 2 12 12 H 1.08993 * 109.88585 * 59.49193 * 11 7 5 13 13 C 1.50701 * 110.01444 * 298.39555 * 11 7 5 14 14 O 1.20828 * 119.99577 * 0.66304 * 13 11 7 15 15 O 1.34224 * 120.00370 * 180.66210 * 13 11 7 16 16 C 1.45200 * 117.00323 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47459 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47155 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.46893 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00508 * 0.02562 * 19 18 17 21 21 C 1.37885 * 120.00051 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00146 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99689 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46956 * 89.99917 * 23 21 19 25 25 H 1.48493 * 109.46828 * 209.99761 * 23 21 19 26 26 H 1.48503 * 109.46941 * 330.00058 * 23 21 19 27 27 H 1.09001 * 109.46981 * 299.99863 * 1 2 3 28 28 H 1.09005 * 109.47034 * 60.00121 * 1 2 3 29 29 H 1.08997 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47052 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46979 * 299.99690 * 3 2 1 32 32 H 1.09001 * 109.47006 * 60.00153 * 3 2 1 33 33 H 1.09002 * 109.47436 * 307.32456 * 4 2 1 34 34 H 1.08999 * 109.47023 * 67.32469 * 4 2 1 35 35 H 1.09004 * 109.47696 * 187.32730 * 4 2 1 36 36 H 1.08997 * 110.36984 * 323.00205 * 8 7 5 37 37 H 1.09004 * 110.36866 * 85.21421 * 8 7 5 38 38 H 1.08995 * 111.19055 * 204.98171 * 9 8 7 39 39 H 1.08992 * 111.02237 * 80.98162 * 9 8 7 40 40 H 1.09003 * 110.71954 * 277.04016 * 10 9 8 41 41 H 1.09003 * 110.71740 * 153.94996 * 10 9 8 42 42 H 1.09000 * 109.47134 * 300.00138 * 16 15 13 43 43 H 1.09008 * 109.46764 * 60.00059 * 16 15 13 44 44 H 1.08995 * 109.46819 * 300.00088 * 17 16 15 45 45 H 1.08998 * 109.46444 * 60.00066 * 17 16 15 46 46 H 1.09000 * 109.47172 * 300.00190 * 18 17 16 47 47 H 1.09001 * 109.46728 * 60.00090 * 18 17 16 48 48 H 0.97001 * 119.99699 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2591 -1.3257 1.9335 7 7 3.3408 -0.6620 1.5496 8 6 4.3998 -0.0320 0.7402 9 6 5.7090 -0.7528 1.1656 10 6 5.4658 -0.9576 2.6842 11 6 3.9487 -1.2294 2.7620 12 1 3.7661 -2.3033 2.8006 13 6 3.3715 -0.5674 3.9866 14 8 2.5251 0.2868 3.8693 15 8 3.7977 -0.9266 5.2077 16 6 3.1981 -0.2465 6.3418 17 6 3.8046 -0.7856 7.6388 18 6 3.1724 -0.0693 8.8338 19 6 3.7702 -0.5999 10.1113 20 1 4.5259 -1.3707 10.0746 21 6 3.3532 -0.1007 11.3271 22 7 3.8753 -0.5634 12.4419 23 14 2.0467 1.2329 11.3906 24 1 0.7028 0.6059 11.4677 25 1 2.2655 2.0835 12.5879 26 1 2.1332 2.0692 10.1665 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.5737 -1.7041 -1.3172 34 1 1.7876 -0.1374 -2.1343 35 1 3.1221 -0.8362 -1.1861 36 1 4.2093 -0.1878 -0.3216 37 1 4.4629 1.0336 0.9612 38 1 6.5806 -0.1221 0.9911 39 1 5.8125 -1.7096 0.6540 40 1 5.7253 -0.0573 3.2412 41 1 6.0305 -1.8138 3.0532 42 1 3.3913 0.8237 6.2672 43 1 2.1223 -0.4222 6.3436 44 1 3.6110 -1.8557 7.7131 45 1 4.8804 -0.6102 7.6372 46 1 3.3655 1.0009 8.7598 47 1 2.0966 -0.2451 8.8352 48 1 3.5816 -0.2124 13.2972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915012775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:17 Heat of formation + Delta-G solvation = -129.612666 kcal Electronic energy + Delta-G solvation = -26775.745003 eV Core-core repulsion = 23023.663466 eV Total energy + Delta-G solvation = -3752.081537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26036 -39.83135 -37.81171 -36.41351 -35.89368 -34.06249 -32.00807 -31.77929 -30.28558 -27.78652 -27.65301 -27.27248 -25.22105 -23.54554 -22.21286 -22.02420 -20.60804 -20.20855 -19.08804 -17.88276 -17.04863 -16.90001 -16.37893 -16.24608 -16.03210 -15.08222 -15.02887 -14.42906 -14.28026 -14.12687 -14.11508 -13.85783 -13.37942 -13.28781 -12.77242 -12.72471 -12.56394 -12.45095 -12.42756 -12.09323 -12.05545 -11.91878 -11.84325 -11.79299 -11.31301 -11.24621 -11.03047 -10.93330 -10.93162 -10.48676 -10.39150 -10.00514 -9.86809 -9.78331 -9.71612 -9.23865 -9.00487 -8.55724 -6.06165 -4.04972 2.22420 2.31767 2.58768 3.02811 3.31221 3.38437 3.42353 3.94017 4.02090 4.21387 4.43370 4.44138 4.45411 4.55567 4.71967 4.75372 4.88442 4.92663 5.05364 5.21515 5.24319 5.27307 5.32543 5.34494 5.40289 5.46351 5.48242 5.48938 5.53807 5.56999 5.60100 5.66960 5.73763 5.85501 5.89987 5.90760 6.04716 6.37634 6.41154 6.69995 6.83210 7.17471 7.22850 7.34104 7.73636 7.87865 8.01416 8.50801 8.98106 9.55567 11.06997 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.002719 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.253961 B =10297.059529 C =11063.137331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.155 4.155 4 C -0.146 4.146 5 C 0.547 3.453 6 O -0.522 6.522 7 N -0.605 5.605 8 C 0.088 3.912 9 C -0.133 4.133 10 C -0.119 4.119 11 C 0.145 3.855 12 H 0.113 0.887 13 C 0.449 3.551 14 O -0.496 6.496 15 O -0.355 6.355 16 C 0.068 3.932 17 C -0.100 4.100 18 C -0.011 4.011 19 C -0.521 4.521 20 H 0.074 0.926 21 C 0.067 3.933 22 N -0.902 5.902 23 Si 0.879 3.121 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.018 0.982 47 H 0.014 0.986 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 1.476 -32.785 32.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.212 4.212 4 C -0.203 4.203 5 C 0.336 3.664 6 O -0.396 6.396 7 N -0.341 5.341 8 C -0.034 4.034 9 C -0.171 4.171 10 C -0.157 4.157 11 C 0.040 3.960 12 H 0.131 0.869 13 C 0.289 3.711 14 O -0.383 6.383 15 O -0.271 6.271 16 C -0.006 4.006 17 C -0.138 4.138 18 C -0.048 4.048 19 C -0.559 4.559 20 H 0.092 0.908 21 C -0.134 4.134 22 N -0.540 5.540 23 Si 0.706 3.294 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.037 0.963 47 H 0.033 0.967 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.754 1.428 -32.207 32.287 hybrid contribution -0.860 0.867 0.430 1.295 sum 0.894 2.295 -31.777 31.872 Atomic orbital electron populations 1.21678 0.91709 1.03003 1.02170 1.20725 0.98071 0.96389 0.93013 1.22174 1.02280 0.93752 1.03015 1.22020 1.01454 1.00849 0.95997 1.20316 0.79763 0.79915 0.86400 1.90722 1.54246 1.42200 1.52431 1.48270 1.07163 1.58208 1.20472 1.22891 0.86617 0.97560 0.96349 1.22948 0.97164 1.01779 0.95229 1.22614 0.91134 1.04593 0.97341 1.21077 0.93936 0.99104 0.81900 0.86921 1.23781 0.80416 0.81358 0.85541 1.90650 1.29793 1.30737 1.87126 1.86472 1.63156 1.62515 1.14931 1.23481 0.97855 0.96262 0.82966 1.21550 1.00717 1.01162 0.90348 1.19521 0.96040 0.95968 0.93292 1.21053 1.23497 1.22571 0.88755 0.90776 1.25012 0.96293 0.96489 0.95605 1.69907 1.43292 1.43216 0.97628 0.86788 0.82363 0.82457 0.77771 1.20179 1.21273 1.19008 0.91893 0.91918 0.91728 0.91098 0.91472 0.91771 0.91848 0.91142 0.91634 0.89012 0.90585 0.88976 0.89881 0.89685 0.88123 0.91716 0.91628 0.91521 0.91526 0.96332 0.96721 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 7.82 37.16 0.29 -0.94 16 2 C -0.08 -0.72 0.75 -155.66 -0.12 -0.84 16 3 C -0.16 -1.19 8.16 37.16 0.30 -0.88 16 4 C -0.15 -0.90 8.32 37.16 0.31 -0.59 16 5 C 0.55 7.10 5.66 -10.98 -0.06 7.04 16 6 O -0.52 -9.17 15.49 -4.48 -0.07 -9.24 16 7 N -0.61 -6.50 2.82 -164.02 -0.46 -6.97 16 8 C 0.09 0.56 4.86 -2.27 -0.01 0.55 16 9 C -0.13 -0.63 7.12 -24.32 -0.17 -0.80 16 10 C -0.12 -0.90 6.42 -24.89 -0.16 -1.06 16 11 C 0.15 1.68 3.34 -68.11 -0.23 1.45 16 12 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 13 C 0.45 7.24 6.82 36.01 0.25 7.48 16 14 O -0.50 -9.53 14.94 -23.04 -0.34 -9.88 16 15 O -0.35 -6.02 10.18 -39.24 -0.40 -6.42 16 16 C 0.07 1.26 5.47 37.16 0.20 1.46 16 17 C -0.10 -2.06 5.53 -26.73 -0.15 -2.20 16 18 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 19 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 20 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 23 Si 0.88 22.09 27.47 -169.99 -4.67 17.43 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.67 7.99 -51.93 -0.41 0.25 16 30 H 0.07 0.44 4.13 -51.93 -0.21 0.23 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.32 5.08 -51.93 -0.26 0.06 16 36 H 0.09 0.40 4.59 -51.93 -0.24 0.16 16 37 H 0.08 0.48 6.88 -51.93 -0.36 0.12 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.70 7.84 -51.93 -0.41 0.30 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 43 H 0.07 1.26 8.13 -51.92 -0.42 0.84 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 47 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -36.37 376.60 -7.75 -44.12 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -8.17 Total: -4.26 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.09 Total: -3.20 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.31 Total: -34.23 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.81 Total: -25.54 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.37 -7.75 -44.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915012775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.490 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds