Wall clock time and date at job start Fri Apr 10 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47271 * 2 1 4 4 C 1.52996 * 109.47279 * 239.99949 * 2 1 3 5 5 C 1.50705 * 109.47056 * 120.00092 * 2 1 3 6 6 O 1.21271 * 119.99868 * 9.94101 * 5 2 1 7 7 N 1.34776 * 119.99868 * 189.94094 * 5 2 1 8 8 C 1.47426 * 125.64979 * 355.59566 * 7 5 2 9 9 C 1.55388 * 104.87535 * 204.16660 * 8 7 5 10 10 C 1.55161 * 101.36364 * 323.01887 * 9 8 7 11 11 C 1.47020 * 125.64623 * 175.63547 * 7 5 2 12 12 H 1.08993 * 109.88585 * 59.49193 * 11 7 5 13 13 C 1.50701 * 110.01444 * 298.39555 * 11 7 5 14 14 O 1.20828 * 119.99577 * 0.66304 * 13 11 7 15 15 O 1.34224 * 120.00370 * 180.66210 * 13 11 7 16 16 C 1.45200 * 117.00323 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47459 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47155 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.46893 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00508 * 0.02562 * 19 18 17 21 21 C 1.37885 * 120.00051 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00146 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99689 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46956 * 89.99917 * 23 21 19 25 25 H 1.48493 * 109.46828 * 209.99761 * 23 21 19 26 26 H 1.48503 * 109.46941 * 330.00058 * 23 21 19 27 27 H 1.09001 * 109.46981 * 299.99863 * 1 2 3 28 28 H 1.09005 * 109.47034 * 60.00121 * 1 2 3 29 29 H 1.08997 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47052 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46979 * 299.99690 * 3 2 1 32 32 H 1.09001 * 109.47006 * 60.00153 * 3 2 1 33 33 H 1.09002 * 109.47436 * 307.32456 * 4 2 1 34 34 H 1.08999 * 109.47023 * 67.32469 * 4 2 1 35 35 H 1.09004 * 109.47696 * 187.32730 * 4 2 1 36 36 H 1.08997 * 110.36984 * 323.00205 * 8 7 5 37 37 H 1.09004 * 110.36866 * 85.21421 * 8 7 5 38 38 H 1.08995 * 111.19055 * 204.98171 * 9 8 7 39 39 H 1.08992 * 111.02237 * 80.98162 * 9 8 7 40 40 H 1.09003 * 110.71954 * 277.04016 * 10 9 8 41 41 H 1.09003 * 110.71740 * 153.94996 * 10 9 8 42 42 H 1.09000 * 109.47134 * 300.00138 * 16 15 13 43 43 H 1.09008 * 109.46764 * 60.00059 * 16 15 13 44 44 H 1.08995 * 109.46819 * 300.00088 * 17 16 15 45 45 H 1.08998 * 109.46444 * 60.00066 * 17 16 15 46 46 H 1.09000 * 109.47172 * 300.00190 * 18 17 16 47 47 H 1.09001 * 109.46728 * 60.00090 * 18 17 16 48 48 H 0.97001 * 119.99699 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2591 -1.3257 1.9335 7 7 3.3408 -0.6620 1.5496 8 6 4.3998 -0.0320 0.7402 9 6 5.7090 -0.7528 1.1656 10 6 5.4658 -0.9576 2.6842 11 6 3.9487 -1.2294 2.7620 12 1 3.7661 -2.3033 2.8006 13 6 3.3715 -0.5674 3.9866 14 8 2.5251 0.2868 3.8693 15 8 3.7977 -0.9266 5.2077 16 6 3.1981 -0.2465 6.3418 17 6 3.8046 -0.7856 7.6388 18 6 3.1724 -0.0693 8.8338 19 6 3.7702 -0.5999 10.1113 20 1 4.5259 -1.3707 10.0746 21 6 3.3532 -0.1007 11.3271 22 7 3.8753 -0.5634 12.4419 23 14 2.0467 1.2329 11.3906 24 1 0.7028 0.6059 11.4677 25 1 2.2655 2.0835 12.5879 26 1 2.1332 2.0692 10.1665 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.5737 -1.7041 -1.3172 34 1 1.7876 -0.1374 -2.1343 35 1 3.1221 -0.8362 -1.1861 36 1 4.2093 -0.1878 -0.3216 37 1 4.4629 1.0336 0.9612 38 1 6.5806 -0.1221 0.9911 39 1 5.8125 -1.7096 0.6540 40 1 5.7253 -0.0573 3.2412 41 1 6.0305 -1.8138 3.0532 42 1 3.3913 0.8237 6.2672 43 1 2.1223 -0.4222 6.3436 44 1 3.6110 -1.8557 7.7131 45 1 4.8804 -0.6102 7.6372 46 1 3.3655 1.0009 8.7598 47 1 2.0966 -0.2451 8.8352 48 1 3.5816 -0.2124 13.2972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915012775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:16 Heat of formation + Delta-G solvation = -152.318569 kcal Electronic energy + Delta-G solvation = -26776.729605 eV Core-core repulsion = 23023.663466 eV Total energy + Delta-G solvation = -3753.066139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.25180 -41.00499 -38.68019 -37.75994 -36.75453 -35.99105 -33.94051 -32.63500 -31.14266 -29.37586 -28.29857 -28.08162 -26.05419 -25.12979 -23.46853 -22.56862 -22.15225 -21.48239 -19.99032 -19.11779 -18.91781 -17.97147 -17.78089 -17.39639 -16.93560 -16.34133 -16.01637 -15.77930 -15.74301 -14.94663 -14.84935 -14.79401 -14.67441 -14.44907 -14.11865 -13.95102 -13.82188 -13.53240 -13.16404 -13.02667 -12.97279 -12.86146 -12.85790 -12.64079 -12.57245 -12.35794 -12.16170 -12.06997 -11.96137 -11.82254 -11.79341 -11.49805 -11.47831 -11.42250 -11.37089 -10.81274 -10.78910 -9.89300 -8.33709 -6.38522 1.04418 1.19473 1.33509 1.34147 1.46176 1.72086 1.95830 2.31998 3.01112 3.26701 3.36474 3.53267 3.66741 3.80098 3.88665 3.90026 3.95550 3.98210 4.10758 4.22668 4.28387 4.41503 4.48292 4.64542 4.65515 4.66490 4.71359 4.75332 4.79826 4.84127 4.89488 4.90302 4.92970 5.03293 5.04935 5.15238 5.17836 5.25121 5.28407 5.30322 5.38075 5.42290 5.43634 5.57940 6.22046 6.34501 6.59748 6.68875 7.05643 7.25851 8.82734 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.002719 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.253961 B =10297.059529 C =11063.137331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C -0.151 4.151 4 C -0.140 4.140 5 C 0.534 3.466 6 O -0.584 6.584 7 N -0.605 5.605 8 C 0.077 3.923 9 C -0.118 4.118 10 C -0.115 4.115 11 C 0.141 3.859 12 H 0.114 0.886 13 C 0.443 3.557 14 O -0.532 6.532 15 O -0.354 6.354 16 C 0.077 3.923 17 C -0.089 4.089 18 C -0.009 4.009 19 C -0.533 4.533 20 H 0.038 0.962 21 C 0.008 3.992 22 N -0.947 5.947 23 Si 0.947 3.053 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.249 1.249 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.026 0.974 47 H 0.018 0.982 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 2.806 -36.200 36.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.081 4.081 3 C -0.208 4.208 4 C -0.197 4.197 5 C 0.325 3.675 6 O -0.462 6.462 7 N -0.339 5.339 8 C -0.043 4.043 9 C -0.155 4.155 10 C -0.153 4.153 11 C 0.035 3.965 12 H 0.132 0.868 13 C 0.286 3.714 14 O -0.421 6.421 15 O -0.270 6.270 16 C 0.003 3.997 17 C -0.127 4.127 18 C -0.047 4.047 19 C -0.571 4.571 20 H 0.057 0.943 21 C -0.190 4.190 22 N -0.587 5.587 23 Si 0.771 3.229 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.172 1.172 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.044 0.956 47 H 0.037 0.963 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.810 2.765 -35.665 35.883 hybrid contribution -1.118 0.382 1.498 1.907 sum 1.692 3.147 -34.168 34.354 Atomic orbital electron populations 1.21685 0.92686 1.02034 1.02100 1.20826 0.97395 0.97244 0.92641 1.22178 1.03403 0.92402 1.02771 1.22017 1.02289 1.00362 0.95002 1.21192 0.80074 0.79232 0.87036 1.90680 1.56006 1.44946 1.54613 1.48481 1.07485 1.57587 1.20342 1.23270 0.86079 0.97730 0.97234 1.22997 0.97010 1.03003 0.92526 1.22703 0.87800 1.04958 0.99855 1.21390 0.96399 0.98580 0.80141 0.86822 1.24886 0.79680 0.80843 0.86016 1.90633 1.31406 1.32624 1.87426 1.86472 1.63018 1.62350 1.15180 1.23146 0.97108 0.96466 0.82982 1.21307 1.00728 1.00461 0.90160 1.19446 0.96109 0.96449 0.92661 1.21364 1.22882 1.21849 0.91034 0.94328 1.25961 0.98783 0.99142 0.95087 1.70045 1.45165 1.45051 0.98451 0.85701 0.79197 0.79435 0.78601 1.19347 1.20478 1.17246 0.94917 0.88867 0.93199 0.89310 0.88781 0.94878 0.92743 0.88523 0.89955 0.86304 0.90224 0.86238 0.88196 0.90421 0.86492 0.91188 0.92536 0.91987 0.91111 0.95599 0.96318 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.82 71.98 0.56 -1.91 16 2 C -0.08 -1.33 0.75 -52.93 -0.04 -1.37 16 3 C -0.15 -2.00 8.16 71.98 0.59 -1.41 16 4 C -0.14 -1.29 8.32 71.98 0.60 -0.69 16 5 C 0.53 13.93 5.66 87.66 0.50 14.43 16 6 O -0.58 -21.67 15.49 6.60 0.10 -21.57 16 7 N -0.60 -12.30 2.82 -791.24 -2.23 -14.53 16 8 C 0.08 0.72 4.86 87.02 0.42 1.14 16 9 C -0.12 -0.62 7.12 32.16 0.23 -0.39 16 10 C -0.12 -1.45 6.42 31.78 0.20 -1.25 16 11 C 0.14 3.14 3.34 44.60 0.15 3.29 16 12 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 13 C 0.44 14.46 6.82 71.24 0.49 14.95 16 14 O -0.53 -21.04 14.94 26.05 0.39 -20.65 16 15 O -0.35 -12.08 10.18 -51.35 -0.52 -12.60 16 16 C 0.08 2.86 5.47 71.98 0.39 3.25 16 17 C -0.09 -3.66 5.53 30.59 0.17 -3.49 16 18 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 19 C -0.53 -31.40 9.66 25.60 0.25 -31.16 16 20 H 0.04 2.47 7.99 -2.91 -0.02 2.44 16 21 C 0.01 0.45 5.47 84.66 0.46 0.92 16 22 N -0.95 -60.04 13.96 21.45 0.30 -59.75 16 23 Si 0.95 45.34 27.47 68.60 1.88 47.23 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 27 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.05 1.09 7.99 -2.39 -0.02 1.07 16 30 H 0.09 0.83 4.13 -2.39 -0.01 0.82 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.46 5.08 -2.39 -0.01 0.45 16 36 H 0.12 0.47 4.59 -2.39 -0.01 0.46 16 37 H 0.08 0.73 6.88 -2.38 -0.02 0.72 16 38 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.08 1.12 7.84 -2.39 -0.02 1.10 16 41 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 2.53 8.13 -2.39 -0.02 2.51 16 43 H 0.06 2.20 8.13 -2.38 -0.02 2.18 16 44 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 45 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 46 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 47 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 48 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -83.86 376.60 5.89 -77.97 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.88 Total: 7.92 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.09 Total: -4.03 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.93 Total: -74.27 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.03 Total: -54.82 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -83.86 5.89 -77.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915012775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.345 kcal (2) G-P(sol) polarization free energy of solvation -83.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds