Wall clock time and date at job start Fri Apr 10 2020 22:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47251 * 175.00479 * 3 2 1 5 5 C 1.52995 * 109.47237 * 185.00177 * 4 3 2 6 6 N 1.46510 * 109.46894 * 295.00305 * 3 2 1 7 7 C 1.46760 * 124.34729 * 119.99966 * 6 3 2 8 8 C 1.54480 * 105.54782 * 162.95825 * 7 6 3 9 9 H 1.09000 * 110.97126 * 267.34164 * 8 7 6 10 10 C 1.50706 * 110.97017 * 143.57833 * 8 7 6 11 11 O 1.20821 * 119.99560 * 0.02562 * 10 8 7 12 12 O 1.34227 * 119.99778 * 180.02562 * 10 8 7 13 13 C 1.45201 * 116.99626 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47286 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47357 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47295 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00248 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47104 * 60.00510 * 20 18 16 22 22 H 1.48506 * 109.47127 * 180.02562 * 20 18 16 23 23 H 1.48489 * 109.47367 * 300.00302 * 20 18 16 24 24 C 1.54861 * 101.66110 * 25.43666 * 8 7 6 25 25 C 1.34415 * 124.34968 * 300.02143 * 6 3 2 26 26 O 1.21288 * 124.94382 * 0.41055 * 25 6 3 27 27 H 1.08994 * 109.47142 * 60.00218 * 1 2 3 28 28 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46845 * 299.99713 * 1 2 3 30 30 H 1.09007 * 109.46707 * 240.00201 * 2 1 3 31 31 H 1.09000 * 109.47212 * 120.00485 * 2 1 3 32 32 H 1.08994 * 109.46737 * 54.99618 * 3 2 1 33 33 H 1.09001 * 109.46485 * 304.99712 * 4 3 2 34 34 H 1.09001 * 109.47125 * 64.99798 * 4 3 2 35 35 H 1.09001 * 109.47699 * 59.99338 * 5 4 3 36 36 H 1.08996 * 109.47041 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46696 * 299.99669 * 5 4 3 38 38 H 1.09002 * 110.24740 * 282.00398 * 7 6 3 39 39 H 1.09002 * 110.24616 * 43.91923 * 7 6 3 40 40 H 1.09000 * 109.47095 * 300.00140 * 13 12 10 41 41 H 1.09000 * 109.46897 * 59.99864 * 13 12 10 42 42 H 1.08997 * 109.47104 * 300.00615 * 14 13 12 43 43 H 1.09003 * 109.46439 * 60.00166 * 14 13 12 44 44 H 1.08997 * 109.47566 * 300.00393 * 15 14 13 45 45 H 1.09003 * 109.47161 * 60.00669 * 15 14 13 46 46 H 0.97003 * 120.00176 * 180.02562 * 19 18 16 47 47 H 1.08998 * 110.46775 * 216.51886 * 24 8 7 48 48 H 1.08998 * 110.49332 * 93.88070 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1256 5 6 4.0645 2.8849 0.2510 6 7 1.6524 2.0975 -1.2519 7 6 0.8076 3.2948 -1.3329 8 6 1.0281 3.8619 -2.7527 9 1 1.8237 4.6070 -2.7560 10 6 -0.2492 4.4375 -3.3081 11 8 -1.2610 4.4103 -2.6483 12 8 -0.2627 4.9802 -4.5357 13 6 -1.5281 5.5147 -5.0061 14 6 -1.3484 6.0871 -6.4136 15 6 -2.6819 6.6497 -6.9095 16 6 -2.5049 7.2129 -8.2961 17 1 -1.5381 7.1732 -8.7758 18 6 -3.5772 7.7790 -8.9523 19 7 -4.7544 7.8279 -8.3680 20 14 -3.3577 8.4778 -10.6707 21 1 -2.9029 7.4022 -11.5881 22 1 -4.6518 9.0249 -11.1517 23 1 -2.3438 9.5622 -10.6383 24 6 1.4523 2.5939 -3.5339 25 6 2.0245 1.6788 -2.4738 26 8 2.7177 0.7083 -2.6943 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6054 1.9815 0.8417 33 1 3.8571 0.8800 1.0112 34 1 4.0029 0.9836 -0.7598 35 1 3.6265 3.3458 1.1364 36 1 5.1508 2.8862 0.3410 37 1 3.7723 3.4492 -0.6346 38 1 -0.2398 3.0277 -1.1919 39 1 1.1144 4.0244 -0.5834 40 1 -2.2725 4.7188 -5.0295 41 1 -1.8617 6.3045 -4.3330 42 1 -0.6041 6.8830 -6.3898 43 1 -1.0146 5.2976 -7.0869 44 1 -3.4258 5.8535 -6.9334 45 1 -3.0160 7.4392 -6.2363 46 1 -5.5090 8.2258 -8.8298 47 1 2.2119 2.8396 -4.2760 48 1 0.5876 2.1320 -4.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915582244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:19 Heat of formation + Delta-G solvation = -150.213870 kcal Electronic energy + Delta-G solvation = -26036.828817 eV Core-core repulsion = 22283.853946 eV Total energy + Delta-G solvation = -3752.974872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36575 -40.08431 -37.02429 -36.79074 -35.84462 -34.04784 -32.45006 -31.88967 -31.31154 -28.14453 -27.36103 -26.71496 -24.30375 -22.85202 -22.39737 -22.33215 -20.58731 -20.20090 -19.20663 -18.02546 -17.18052 -16.94344 -16.41793 -16.18627 -15.84221 -15.37506 -14.79141 -14.64966 -14.49988 -14.41588 -14.10036 -13.65147 -13.47876 -13.34655 -13.25893 -13.05453 -12.86537 -12.26813 -12.22567 -12.05401 -11.96677 -11.88223 -11.69794 -11.48646 -11.29487 -11.20202 -11.15766 -10.98685 -10.75466 -10.69516 -10.52342 -10.47463 -9.86709 -9.78075 -9.54478 -9.21346 -8.98866 -8.41401 -6.06321 -4.09607 2.08548 2.31473 2.41297 2.81255 3.30750 3.35244 3.37683 3.85456 3.96538 4.30106 4.39957 4.48075 4.50312 4.59966 4.69856 4.87919 4.90766 5.00044 5.08224 5.12477 5.15007 5.21197 5.29654 5.38820 5.46308 5.47934 5.49803 5.52432 5.54066 5.60587 5.64911 5.76358 5.81670 5.90871 5.93501 5.97251 6.31583 6.38602 6.47893 6.74400 6.80178 6.92693 7.55968 7.66675 7.72958 7.88780 7.91527 8.32332 8.96377 9.54890 11.05029 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.002140 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.107000 B =13083.493876 C =13276.210122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.161 3.839 4 C -0.142 4.142 5 C -0.149 4.149 6 N -0.610 5.610 7 C 0.113 3.887 8 C -0.097 4.097 9 H 0.128 0.872 10 C 0.470 3.530 11 O -0.505 6.505 12 O -0.352 6.352 13 C 0.068 3.932 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.144 4.144 25 C 0.524 3.476 26 O -0.524 6.524 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.262 0.738 47 H 0.117 0.883 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.265 -12.143 19.991 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.059 3.941 4 C -0.180 4.180 5 C -0.206 4.206 6 N -0.345 5.345 7 C -0.010 4.010 8 C -0.117 4.117 9 H 0.146 0.854 10 C 0.312 3.688 11 O -0.393 6.393 12 O -0.268 6.268 13 C -0.005 4.005 14 C -0.147 4.147 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.184 4.184 25 C 0.311 3.689 26 O -0.400 6.400 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.135 0.865 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.127 -12.616 20.088 28.134 hybrid contribution -0.270 0.619 -0.888 1.116 sum 14.857 -11.996 19.201 27.080 Atomic orbital electron populations 1.21734 0.95346 1.01755 1.01868 1.21958 0.96522 0.95975 1.03547 1.21109 0.94847 0.93358 0.84800 1.21955 0.94682 0.97978 1.03388 1.21729 1.00936 0.96327 1.01639 1.48354 1.50768 1.29019 1.06357 1.22057 0.96826 0.86927 0.95145 1.21896 0.95557 0.98677 0.95576 0.85399 1.22900 0.89833 0.75528 0.80569 1.90679 1.35098 1.54042 1.59518 1.86499 1.40170 1.68691 1.31410 1.23577 0.81283 0.97960 0.97668 1.21775 1.02271 0.99938 0.90703 1.19045 0.89976 0.96078 0.96177 1.21124 0.95815 1.38722 1.00434 0.92463 1.25029 0.95228 0.96004 0.98192 1.69950 1.00475 1.44993 1.37933 0.86600 0.77302 0.79414 0.84355 1.20153 1.21261 1.20170 1.22385 1.04186 0.93608 0.98207 1.20658 0.79424 0.84808 0.83988 1.90710 1.37981 1.27679 1.83646 0.92673 0.92660 0.92804 0.90174 0.90888 0.89277 0.90874 0.90171 0.92853 0.92666 0.92706 0.88861 0.89374 0.91358 0.91329 0.92072 0.92062 0.96240 0.96237 0.92805 0.86466 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.80 37.16 0.36 -0.80 16 2 C -0.14 -1.10 5.36 -26.73 -0.14 -1.24 16 3 C 0.16 1.17 2.26 -67.93 -0.15 1.01 16 4 C -0.14 -1.02 5.36 -26.74 -0.14 -1.16 16 5 C -0.15 -0.96 9.80 37.15 0.36 -0.59 16 6 N -0.61 -5.10 1.74 -164.84 -0.29 -5.38 16 7 C 0.11 0.88 6.66 -3.12 -0.02 0.86 16 8 C -0.10 -0.84 3.67 -90.01 -0.33 -1.17 16 9 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 10 C 0.47 5.98 7.20 36.01 0.26 6.24 16 11 O -0.51 -7.70 15.25 -18.75 -0.29 -7.99 16 12 O -0.35 -5.20 10.22 -39.25 -0.40 -5.60 16 13 C 0.07 1.16 5.47 37.16 0.20 1.37 16 14 C -0.11 -2.16 5.53 -26.73 -0.15 -2.31 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 20 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.14 -1.29 6.42 -26.62 -0.17 -1.47 16 25 C 0.52 5.48 7.37 -10.86 -0.08 5.40 16 26 O -0.52 -7.12 15.02 5.55 0.08 -7.04 16 27 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.82 6.62 -51.93 -0.34 0.47 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.77 6.65 -51.93 -0.35 0.43 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 38 H 0.09 0.84 6.96 -51.93 -0.36 0.48 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 41 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.11 1.04 7.90 -51.93 -0.41 0.63 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -31.98 390.66 -8.40 -40.38 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -8.57 Total: -4.13 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.55 Total: -6.66 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.45 Total: -31.14 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.60 Total: -20.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.98 -8.40 -40.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915582244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.833 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds