Wall clock time and date at job start Fri Apr 10 2020 22:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47251 * 175.00479 * 3 2 1 5 5 C 1.52995 * 109.47237 * 185.00177 * 4 3 2 6 6 N 1.46510 * 109.46894 * 295.00305 * 3 2 1 7 7 C 1.46760 * 124.34729 * 119.99966 * 6 3 2 8 8 C 1.54480 * 105.54782 * 162.95825 * 7 6 3 9 9 H 1.09000 * 110.97126 * 267.34164 * 8 7 6 10 10 C 1.50706 * 110.97017 * 143.57833 * 8 7 6 11 11 O 1.20821 * 119.99560 * 0.02562 * 10 8 7 12 12 O 1.34227 * 119.99778 * 180.02562 * 10 8 7 13 13 C 1.45201 * 116.99626 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47286 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47357 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47295 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00248 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47104 * 60.00510 * 20 18 16 22 22 H 1.48506 * 109.47127 * 180.02562 * 20 18 16 23 23 H 1.48489 * 109.47367 * 300.00302 * 20 18 16 24 24 C 1.54861 * 101.66110 * 25.43666 * 8 7 6 25 25 C 1.34415 * 124.34968 * 300.02143 * 6 3 2 26 26 O 1.21288 * 124.94382 * 0.41055 * 25 6 3 27 27 H 1.08994 * 109.47142 * 60.00218 * 1 2 3 28 28 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46845 * 299.99713 * 1 2 3 30 30 H 1.09007 * 109.46707 * 240.00201 * 2 1 3 31 31 H 1.09000 * 109.47212 * 120.00485 * 2 1 3 32 32 H 1.08994 * 109.46737 * 54.99618 * 3 2 1 33 33 H 1.09001 * 109.46485 * 304.99712 * 4 3 2 34 34 H 1.09001 * 109.47125 * 64.99798 * 4 3 2 35 35 H 1.09001 * 109.47699 * 59.99338 * 5 4 3 36 36 H 1.08996 * 109.47041 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46696 * 299.99669 * 5 4 3 38 38 H 1.09002 * 110.24740 * 282.00398 * 7 6 3 39 39 H 1.09002 * 110.24616 * 43.91923 * 7 6 3 40 40 H 1.09000 * 109.47095 * 300.00140 * 13 12 10 41 41 H 1.09000 * 109.46897 * 59.99864 * 13 12 10 42 42 H 1.08997 * 109.47104 * 300.00615 * 14 13 12 43 43 H 1.09003 * 109.46439 * 60.00166 * 14 13 12 44 44 H 1.08997 * 109.47566 * 300.00393 * 15 14 13 45 45 H 1.09003 * 109.47161 * 60.00669 * 15 14 13 46 46 H 0.97003 * 120.00176 * 180.02562 * 19 18 16 47 47 H 1.08998 * 110.46775 * 216.51886 * 24 8 7 48 48 H 1.08998 * 110.49332 * 93.88070 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1256 5 6 4.0645 2.8849 0.2510 6 7 1.6524 2.0975 -1.2519 7 6 0.8076 3.2948 -1.3329 8 6 1.0281 3.8619 -2.7527 9 1 1.8237 4.6070 -2.7560 10 6 -0.2492 4.4375 -3.3081 11 8 -1.2610 4.4103 -2.6483 12 8 -0.2627 4.9802 -4.5357 13 6 -1.5281 5.5147 -5.0061 14 6 -1.3484 6.0871 -6.4136 15 6 -2.6819 6.6497 -6.9095 16 6 -2.5049 7.2129 -8.2961 17 1 -1.5381 7.1732 -8.7758 18 6 -3.5772 7.7790 -8.9523 19 7 -4.7544 7.8279 -8.3680 20 14 -3.3577 8.4778 -10.6707 21 1 -2.9029 7.4022 -11.5881 22 1 -4.6518 9.0249 -11.1517 23 1 -2.3438 9.5622 -10.6383 24 6 1.4523 2.5939 -3.5339 25 6 2.0245 1.6788 -2.4738 26 8 2.7177 0.7083 -2.6943 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6054 1.9815 0.8417 33 1 3.8571 0.8800 1.0112 34 1 4.0029 0.9836 -0.7598 35 1 3.6265 3.3458 1.1364 36 1 5.1508 2.8862 0.3410 37 1 3.7723 3.4492 -0.6346 38 1 -0.2398 3.0277 -1.1919 39 1 1.1144 4.0244 -0.5834 40 1 -2.2725 4.7188 -5.0295 41 1 -1.8617 6.3045 -4.3330 42 1 -0.6041 6.8830 -6.3898 43 1 -1.0146 5.2976 -7.0869 44 1 -3.4258 5.8535 -6.9334 45 1 -3.0160 7.4392 -6.2363 46 1 -5.5090 8.2258 -8.8298 47 1 2.2119 2.8396 -4.2760 48 1 0.5876 2.1320 -4.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915582244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:18 Heat of formation + Delta-G solvation = -166.317155 kcal Electronic energy + Delta-G solvation = -26037.527108 eV Core-core repulsion = 22283.853946 eV Total energy + Delta-G solvation = -3753.673163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.22320 -41.10153 -38.09403 -37.64585 -36.66982 -35.92680 -33.69400 -33.01913 -32.16346 -29.16771 -28.75762 -27.46993 -25.66013 -24.22717 -23.06477 -22.90399 -22.15003 -21.35964 -19.96610 -18.99883 -18.57656 -17.88194 -17.81869 -17.40998 -16.76792 -16.49542 -16.17027 -15.68787 -15.48886 -15.36440 -14.84541 -14.67179 -14.49940 -14.17743 -14.05178 -13.88487 -13.84491 -13.74007 -13.68947 -13.41622 -12.80412 -12.68515 -12.60210 -12.52736 -12.51916 -12.32050 -12.09018 -12.05871 -11.93213 -11.79743 -11.76489 -11.74555 -11.41875 -11.38921 -11.23304 -10.66814 -10.55795 -9.69431 -8.21035 -6.32252 1.05225 1.41575 1.45153 1.46173 1.50833 1.53449 2.00880 2.41986 3.08930 3.12980 3.24109 3.61828 3.65825 3.81623 4.00881 4.02351 4.05315 4.07901 4.12639 4.33858 4.42853 4.44349 4.48181 4.54276 4.56661 4.59629 4.72397 4.81286 4.82724 4.88627 4.90290 4.94672 5.03666 5.09878 5.10220 5.17389 5.21944 5.33100 5.39725 5.41974 5.53109 5.65879 5.68019 5.81590 6.08197 6.20283 6.62456 6.83861 7.11085 7.37252 8.90805 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.002140 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.107000 B =13083.493876 C =13276.210122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.156 3.844 4 C -0.138 4.138 5 C -0.146 4.146 6 N -0.602 5.602 7 C 0.116 3.884 8 C -0.084 4.084 9 H 0.159 0.841 10 C 0.472 3.528 11 O -0.530 6.530 12 O -0.352 6.352 13 C 0.078 3.922 14 C -0.095 4.095 15 C 0.025 3.975 16 C -0.543 4.543 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.142 4.142 25 C 0.519 3.481 26 O -0.561 6.561 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.066 0.934 44 H -0.004 1.004 45 H -0.002 1.002 46 H 0.264 0.736 47 H 0.129 0.871 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.774 -11.522 20.810 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.055 3.945 4 C -0.176 4.176 5 C -0.204 4.204 6 N -0.335 5.335 7 C -0.007 4.007 8 C -0.103 4.103 9 H 0.177 0.823 10 C 0.315 3.685 11 O -0.419 6.419 12 O -0.268 6.268 13 C 0.005 3.995 14 C -0.132 4.132 15 C -0.012 4.012 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.182 4.182 25 C 0.307 3.693 26 O -0.440 6.440 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.014 0.986 45 H 0.016 0.984 46 H 0.073 0.927 47 H 0.147 0.853 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.648 -11.992 20.933 29.311 hybrid contribution -0.751 0.367 -1.058 1.349 sum 15.897 -11.625 19.874 27.979 Atomic orbital electron populations 1.21709 0.95339 1.01731 1.01633 1.21926 0.96422 0.96392 1.02974 1.21302 0.95135 0.93173 0.84896 1.21904 0.94333 0.98655 1.02686 1.21713 1.01082 0.95556 1.02020 1.48413 1.49937 1.28922 1.06254 1.22129 0.96178 0.87093 0.95295 1.21965 0.93916 0.98900 0.95529 0.82298 1.23638 0.90892 0.74511 0.79420 1.90680 1.36446 1.54947 1.59871 1.86481 1.38473 1.69043 1.32759 1.23150 0.82293 0.97790 0.96282 1.21454 0.99274 1.00184 0.92329 1.18931 0.92208 0.94754 0.95282 1.21605 0.96220 1.38642 1.01629 0.91689 1.25994 0.94869 0.96386 1.02669 1.70086 1.01385 1.46029 1.39839 0.85471 0.77449 0.78955 0.79002 1.19137 1.21035 1.19013 1.22384 1.04188 0.93437 0.98219 1.20858 0.79047 0.84459 0.84889 1.90694 1.39802 1.29279 1.84258 0.94483 0.92696 0.91310 0.93088 0.89108 0.86842 0.89416 0.93055 0.91286 0.92647 0.93335 0.90029 0.86481 0.91901 0.91509 0.91322 0.91570 0.98579 0.98390 0.92709 0.85271 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.80 71.98 0.71 -1.44 16 2 C -0.14 -2.03 5.36 30.60 0.16 -1.87 16 3 C 0.16 1.98 2.26 44.99 0.10 2.08 16 4 C -0.14 -1.76 5.36 30.59 0.16 -1.59 16 5 C -0.15 -1.53 9.80 71.98 0.71 -0.82 16 6 N -0.60 -9.14 1.74 -794.03 -1.38 -10.52 16 7 C 0.12 1.52 6.66 86.83 0.58 2.09 16 8 C -0.08 -1.25 3.67 -10.40 -0.04 -1.29 16 9 H 0.16 1.47 8.14 -2.39 -0.02 1.46 16 10 C 0.47 11.30 7.20 71.24 0.51 11.81 16 11 O -0.53 -15.68 15.25 21.98 0.34 -15.34 16 12 O -0.35 -9.90 10.22 -51.39 -0.53 -10.42 16 13 C 0.08 2.66 5.47 71.98 0.39 3.05 16 14 C -0.09 -3.72 5.53 30.59 0.17 -3.55 16 15 C 0.03 1.30 4.97 29.84 0.15 1.45 16 16 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 17 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 20 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 C -0.14 -2.39 6.42 30.67 0.20 -2.20 16 25 C 0.52 10.59 7.37 87.90 0.65 11.24 16 26 O -0.56 -15.58 15.02 -3.06 -0.05 -15.62 16 27 H 0.04 0.67 7.75 -2.39 -0.02 0.65 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 1.07 6.62 -2.38 -0.02 1.05 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.98 6.65 -2.39 -0.02 0.96 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 0.57 7.75 -2.39 -0.02 0.55 16 38 H 0.08 1.34 6.96 -2.39 -0.02 1.32 16 39 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 41 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 45 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.10 1.91 7.90 -2.39 -0.02 1.89 16 Total: -1.00 -70.33 390.66 6.75 -63.58 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.91 Total: 9.28 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 5.14 Total: -10.58 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -1.09 Total: -66.39 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.24 Total: -41.39 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.33 6.75 -63.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915582244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.742 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds