Wall clock time and date at job start Fri Apr 10 2020 22:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47375 * 2 1 4 4 C 1.53005 * 109.47213 * 174.99587 * 3 2 1 5 5 C 1.52998 * 109.46732 * 184.99912 * 4 3 2 6 6 N 1.46495 * 109.47122 * 294.99650 * 3 2 1 7 7 C 1.46765 * 124.34751 * 119.99411 * 6 3 2 8 8 C 1.54487 * 105.47197 * 163.00876 * 7 6 3 9 9 H 1.08993 * 110.96853 * 143.57307 * 8 7 6 10 10 C 1.50704 * 110.96883 * 267.29937 * 8 7 6 11 11 O 1.20830 * 119.99586 * 0.02562 * 10 8 7 12 12 O 1.34219 * 119.99899 * 179.97438 * 10 8 7 13 13 C 1.45200 * 117.00116 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47384 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46983 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46637 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00546 * 0.27598 * 16 15 14 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47326 * 90.00142 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99892 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99603 * 20 18 16 24 24 C 1.54624 * 101.76527 * 25.41700 * 8 7 6 25 25 C 1.34418 * 124.34990 * 300.02603 * 6 3 2 26 26 O 1.21281 * 124.94604 * 0.41880 * 25 6 3 27 27 H 1.09003 * 109.47090 * 300.00353 * 1 2 3 28 28 H 1.09002 * 109.47229 * 59.99949 * 1 2 3 29 29 H 1.08992 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47741 * 239.99733 * 2 1 3 31 31 H 1.09002 * 109.47229 * 120.00051 * 2 1 3 32 32 H 1.08999 * 109.46954 * 54.99658 * 3 2 1 33 33 H 1.08997 * 109.47145 * 305.00022 * 4 3 2 34 34 H 1.08999 * 109.46759 * 64.99794 * 4 3 2 35 35 H 1.09000 * 109.46647 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.47395 * 299.99956 * 5 4 3 37 37 H 1.09000 * 109.47090 * 60.00255 * 5 4 3 38 38 H 1.09003 * 110.24565 * 44.00957 * 7 6 3 39 39 H 1.08996 * 110.25052 * 282.00770 * 7 6 3 40 40 H 1.08997 * 109.47378 * 59.99465 * 13 12 10 41 41 H 1.09004 * 109.47124 * 300.00017 * 13 12 10 42 42 H 1.09000 * 109.46931 * 59.99844 * 14 13 12 43 43 H 1.08997 * 109.46785 * 299.99324 * 14 13 12 44 44 H 1.08992 * 109.47421 * 59.99948 * 15 14 13 45 45 H 1.08997 * 109.46955 * 299.99401 * 15 14 13 46 46 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 47 47 H 1.09002 * 110.48703 * 93.88131 * 24 8 7 48 48 H 1.09001 * 110.49215 * 216.52436 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1258 5 6 4.0645 2.8850 0.2512 6 7 1.6526 2.0975 -1.2518 7 6 0.8076 3.2948 -1.3329 8 6 1.0288 3.8598 -2.7537 9 1 0.1052 4.2757 -3.1561 10 6 2.1285 4.8901 -2.7592 11 8 2.7019 5.1672 -1.7323 12 8 2.4717 5.4993 -3.9049 13 6 3.5398 6.4804 -3.8356 14 6 3.7878 7.0636 -5.2283 15 6 4.9129 8.0979 -5.1550 16 6 5.1575 8.6718 -6.5268 17 1 4.5664 8.3360 -7.3660 18 6 6.1319 9.6302 -6.7094 19 7 6.3458 10.1307 -7.9066 20 14 7.1490 10.2166 -5.2565 21 1 8.3597 9.3670 -5.1247 22 1 7.5561 11.6280 -5.4749 23 1 6.3398 10.1212 -4.0150 24 6 1.4526 2.5939 -3.5339 25 6 2.0247 1.6787 -2.4737 26 8 2.7177 0.7081 -2.6942 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6053 1.9816 0.8418 33 1 3.8570 0.8800 1.0114 34 1 4.0030 0.9835 -0.7595 35 1 5.1508 2.8863 0.3404 36 1 3.7723 3.4493 -0.6344 37 1 3.6263 3.3457 1.1365 38 1 1.1154 4.0250 -0.5845 39 1 -0.2397 3.0277 -1.1920 40 1 4.4500 6.0018 -3.4743 41 1 3.2544 7.2806 -3.1526 42 1 2.8775 7.5424 -5.5890 43 1 4.0731 6.2637 -5.9115 44 1 5.8233 7.6196 -4.7941 45 1 4.6272 8.8978 -4.4719 46 1 7.0315 10.8047 -8.0351 47 1 0.5879 2.1320 -4.0103 48 1 2.2122 2.8395 -4.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915582245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:21 Heat of formation + Delta-G solvation = -145.987605 kcal Electronic energy + Delta-G solvation = -26674.234528 eV Core-core repulsion = 22921.442920 eV Total energy + Delta-G solvation = -3752.791607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44835 -39.98604 -37.03412 -36.72350 -35.84400 -34.12683 -32.33736 -31.95392 -31.32451 -28.14726 -27.73675 -26.70620 -24.37275 -22.69909 -22.33798 -22.19390 -20.64478 -20.14203 -19.15851 -18.02084 -17.17352 -17.10131 -16.60861 -16.43541 -15.74896 -15.27092 -14.85911 -14.67352 -14.33153 -14.24444 -14.03063 -13.54612 -13.42045 -13.30013 -13.17760 -12.96464 -12.77050 -12.74757 -12.35525 -12.12450 -12.06957 -11.88806 -11.77640 -11.37497 -11.21655 -11.12482 -11.10024 -11.01990 -11.00114 -10.59534 -10.49775 -10.03708 -9.86059 -9.80967 -9.75700 -9.27813 -8.94340 -8.59043 -6.09240 -4.08427 2.07040 2.34025 2.56174 2.71122 3.28122 3.35762 3.38540 3.85657 3.94525 4.32092 4.40766 4.42399 4.55856 4.66831 4.75922 4.90684 4.98980 5.05619 5.11766 5.19539 5.21615 5.23857 5.26275 5.34109 5.39233 5.41372 5.43614 5.53620 5.62078 5.65568 5.76191 5.80035 5.86900 5.93310 5.99215 6.21504 6.31070 6.34026 6.40075 6.60412 6.75119 6.86946 7.17177 7.28636 7.67185 7.74640 7.94290 8.47144 8.94949 9.52155 11.03886 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002614 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.096471 B =10708.019953 C =11120.227820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.163 3.837 4 C -0.141 4.141 5 C -0.153 4.153 6 N -0.607 5.607 7 C 0.113 3.887 8 C -0.099 4.099 9 H 0.136 0.864 10 C 0.463 3.537 11 O -0.501 6.501 12 O -0.351 6.351 13 C 0.067 3.933 14 C -0.102 4.102 15 C -0.010 4.010 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.147 4.147 25 C 0.518 3.482 26 O -0.524 6.524 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.014 0.986 45 H 0.019 0.981 46 H 0.264 0.736 47 H 0.120 0.880 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 -18.412 17.853 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.061 3.939 4 C -0.179 4.179 5 C -0.210 4.210 6 N -0.342 5.342 7 C -0.010 4.010 8 C -0.119 4.119 9 H 0.154 0.846 10 C 0.305 3.695 11 O -0.389 6.389 12 O -0.267 6.267 13 C -0.006 4.006 14 C -0.139 4.139 15 C -0.048 4.048 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.187 4.187 25 C 0.306 3.694 26 O -0.400 6.400 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.033 0.967 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.138 0.862 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.572 -18.709 18.002 29.773 hybrid contribution 0.684 0.656 0.752 1.210 sum -13.887 -18.052 18.754 29.503 Atomic orbital electron populations 1.21717 0.95565 1.01591 1.01578 1.21959 0.96306 0.96178 1.03588 1.21080 0.95117 0.92966 0.84736 1.21948 0.94573 0.98347 1.03034 1.21787 1.00645 0.95916 1.02701 1.48270 1.50731 1.28870 1.06293 1.22097 0.95340 0.87437 0.96115 1.21965 0.98298 0.93599 0.97988 0.84625 1.23126 0.83278 0.80866 0.82194 1.90651 1.52321 1.62142 1.33738 1.86483 1.53087 1.52223 1.34955 1.23538 0.86970 0.88731 1.01367 1.21568 1.00985 0.99256 0.92112 1.19516 0.93001 0.93687 0.98563 1.21045 1.19526 1.22106 0.93325 0.90775 1.25020 0.96838 0.95907 0.95650 1.69908 1.33355 1.29127 1.21549 0.86785 0.80889 0.78107 0.83563 1.20197 1.21263 1.19009 1.22397 1.04596 0.93449 0.98265 1.20736 0.79631 0.84918 0.84160 1.90710 1.37706 1.27890 1.83689 0.92907 0.92806 0.92765 0.90180 0.90918 0.89414 0.91165 0.90438 0.93059 0.91238 0.93135 0.88421 0.89634 0.91521 0.91410 0.91453 0.91485 0.96738 0.96315 0.92621 0.86194 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.80 37.15 0.36 -0.58 16 2 C -0.14 -1.11 5.36 -26.73 -0.14 -1.26 16 3 C 0.16 1.37 2.26 -67.93 -0.15 1.22 16 4 C -0.14 -1.39 5.36 -26.73 -0.14 -1.54 16 5 C -0.15 -1.69 9.80 37.16 0.36 -1.33 16 6 N -0.61 -5.46 1.74 -164.83 -0.29 -5.75 16 7 C 0.11 0.78 6.63 -3.12 -0.02 0.76 16 8 C -0.10 -0.77 3.66 -90.14 -0.33 -1.10 16 9 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 10 C 0.46 5.75 7.20 36.01 0.26 6.00 16 11 O -0.50 -7.32 13.57 -18.75 -0.25 -7.57 16 12 O -0.35 -5.07 10.20 -39.23 -0.40 -5.47 16 13 C 0.07 1.10 5.47 37.16 0.20 1.30 16 14 C -0.10 -1.95 5.53 -26.73 -0.15 -2.10 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 16 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 17 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 20 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 24 C -0.15 -1.24 6.40 -26.74 -0.17 -1.41 16 25 C 0.52 5.80 7.37 -10.86 -0.08 5.72 16 26 O -0.52 -7.72 15.02 5.56 0.08 -7.63 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.36 7.75 -51.93 -0.40 -0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.83 6.62 -51.93 -0.34 0.49 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.97 6.65 -51.93 -0.35 0.62 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.93 5.96 -51.93 -0.31 0.62 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.77 7.02 -51.93 -0.36 0.40 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 41 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 45 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.11 1.12 7.89 -51.93 -0.41 0.71 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -33.42 383.56 -7.96 -41.38 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.44 Total: -2.98 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.54 Total: -7.83 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.49 Total: -32.56 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.57 Total: -20.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.42 -7.96 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915582245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.610 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds