Wall clock time and date at job start Fri Apr 10 2020 22:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47375 * 2 1 4 4 C 1.53005 * 109.47213 * 174.99587 * 3 2 1 5 5 C 1.52998 * 109.46732 * 184.99912 * 4 3 2 6 6 N 1.46495 * 109.47122 * 294.99650 * 3 2 1 7 7 C 1.46765 * 124.34751 * 119.99411 * 6 3 2 8 8 C 1.54487 * 105.47197 * 163.00876 * 7 6 3 9 9 H 1.08993 * 110.96853 * 143.57307 * 8 7 6 10 10 C 1.50704 * 110.96883 * 267.29937 * 8 7 6 11 11 O 1.20830 * 119.99586 * 0.02562 * 10 8 7 12 12 O 1.34219 * 119.99899 * 179.97438 * 10 8 7 13 13 C 1.45200 * 117.00116 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47384 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46983 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46637 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00546 * 0.27598 * 16 15 14 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47326 * 90.00142 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99892 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99603 * 20 18 16 24 24 C 1.54624 * 101.76527 * 25.41700 * 8 7 6 25 25 C 1.34418 * 124.34990 * 300.02603 * 6 3 2 26 26 O 1.21281 * 124.94604 * 0.41880 * 25 6 3 27 27 H 1.09003 * 109.47090 * 300.00353 * 1 2 3 28 28 H 1.09002 * 109.47229 * 59.99949 * 1 2 3 29 29 H 1.08992 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47741 * 239.99733 * 2 1 3 31 31 H 1.09002 * 109.47229 * 120.00051 * 2 1 3 32 32 H 1.08999 * 109.46954 * 54.99658 * 3 2 1 33 33 H 1.08997 * 109.47145 * 305.00022 * 4 3 2 34 34 H 1.08999 * 109.46759 * 64.99794 * 4 3 2 35 35 H 1.09000 * 109.46647 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.47395 * 299.99956 * 5 4 3 37 37 H 1.09000 * 109.47090 * 60.00255 * 5 4 3 38 38 H 1.09003 * 110.24565 * 44.00957 * 7 6 3 39 39 H 1.08996 * 110.25052 * 282.00770 * 7 6 3 40 40 H 1.08997 * 109.47378 * 59.99465 * 13 12 10 41 41 H 1.09004 * 109.47124 * 300.00017 * 13 12 10 42 42 H 1.09000 * 109.46931 * 59.99844 * 14 13 12 43 43 H 1.08997 * 109.46785 * 299.99324 * 14 13 12 44 44 H 1.08992 * 109.47421 * 59.99948 * 15 14 13 45 45 H 1.08997 * 109.46955 * 299.99401 * 15 14 13 46 46 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 47 47 H 1.09002 * 110.48703 * 93.88131 * 24 8 7 48 48 H 1.09001 * 110.49215 * 216.52436 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1258 5 6 4.0645 2.8850 0.2512 6 7 1.6526 2.0975 -1.2518 7 6 0.8076 3.2948 -1.3329 8 6 1.0288 3.8598 -2.7537 9 1 0.1052 4.2757 -3.1561 10 6 2.1285 4.8901 -2.7592 11 8 2.7019 5.1672 -1.7323 12 8 2.4717 5.4993 -3.9049 13 6 3.5398 6.4804 -3.8356 14 6 3.7878 7.0636 -5.2283 15 6 4.9129 8.0979 -5.1550 16 6 5.1575 8.6718 -6.5268 17 1 4.5664 8.3360 -7.3660 18 6 6.1319 9.6302 -6.7094 19 7 6.3458 10.1307 -7.9066 20 14 7.1490 10.2166 -5.2565 21 1 8.3597 9.3670 -5.1247 22 1 7.5561 11.6280 -5.4749 23 1 6.3398 10.1212 -4.0150 24 6 1.4526 2.5939 -3.5339 25 6 2.0247 1.6787 -2.4737 26 8 2.7177 0.7081 -2.6942 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6053 1.9816 0.8418 33 1 3.8570 0.8800 1.0114 34 1 4.0030 0.9835 -0.7595 35 1 5.1508 2.8863 0.3404 36 1 3.7723 3.4493 -0.6344 37 1 3.6263 3.3457 1.1365 38 1 1.1154 4.0250 -0.5845 39 1 -0.2397 3.0277 -1.1920 40 1 4.4500 6.0018 -3.4743 41 1 3.2544 7.2806 -3.1526 42 1 2.8775 7.5424 -5.5890 43 1 4.0731 6.2637 -5.9115 44 1 5.8233 7.6196 -4.7941 45 1 4.6272 8.8978 -4.4719 46 1 7.0315 10.8047 -8.0351 47 1 0.5879 2.1320 -4.0103 48 1 2.2122 2.8395 -4.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915582245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:20 Heat of formation + Delta-G solvation = -164.785235 kcal Electronic energy + Delta-G solvation = -26675.049654 eV Core-core repulsion = 22921.442920 eV Total energy + Delta-G solvation = -3753.606734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27091 -40.95861 -38.07571 -37.59048 -36.65629 -35.93934 -33.88761 -33.02891 -32.11365 -29.52369 -28.74493 -27.45997 -25.57596 -24.06747 -23.04445 -22.90885 -22.09814 -21.33051 -19.94225 -19.03558 -18.87591 -17.92962 -17.79352 -17.56600 -16.63076 -16.33101 -16.06028 -15.75738 -15.51167 -15.34619 -14.84090 -14.77664 -14.53690 -14.34324 -14.03072 -13.91532 -13.88208 -13.76310 -13.48669 -13.34620 -12.93706 -12.85308 -12.69488 -12.53582 -12.47264 -12.16439 -12.00492 -11.98526 -11.91270 -11.80212 -11.78037 -11.75340 -11.40927 -11.37860 -11.30853 -10.78859 -10.63608 -9.65294 -8.31324 -6.36183 1.11176 1.35787 1.36694 1.48368 1.50844 1.63231 2.02864 2.34298 3.03804 3.20239 3.28441 3.55310 3.70161 3.82010 3.99524 4.00477 4.02039 4.10097 4.30274 4.33081 4.38090 4.45108 4.54081 4.57060 4.58071 4.64057 4.70670 4.73155 4.79204 4.82619 4.89293 4.94227 4.95168 5.00923 5.10592 5.16176 5.21985 5.30616 5.37981 5.39866 5.47720 5.54348 5.62106 5.71362 6.15954 6.24708 6.67470 6.72589 7.15973 7.28263 8.85184 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002614 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.096471 B =10708.019953 C =11120.227820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.160 3.840 4 C -0.138 4.138 5 C -0.148 4.148 6 N -0.604 5.604 7 C 0.113 3.887 8 C -0.087 4.087 9 H 0.179 0.821 10 C 0.457 3.543 11 O -0.524 6.524 12 O -0.356 6.356 13 C 0.078 3.922 14 C -0.093 4.093 15 C -0.009 4.009 16 C -0.533 4.533 17 H 0.036 0.964 18 C 0.005 3.995 19 N -0.949 5.949 20 Si 0.949 3.051 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.245 1.245 24 C -0.142 4.142 25 C 0.505 3.495 26 O -0.572 6.572 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.027 0.973 46 H 0.267 0.733 47 H 0.154 0.846 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.280 -18.605 20.654 32.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.058 3.942 4 C -0.176 4.176 5 C -0.205 4.205 6 N -0.337 5.337 7 C -0.009 4.009 8 C -0.106 4.106 9 H 0.197 0.803 10 C 0.301 3.699 11 O -0.413 6.413 12 O -0.273 6.273 13 C 0.004 3.996 14 C -0.130 4.130 15 C -0.047 4.047 16 C -0.571 4.571 17 H 0.054 0.946 18 C -0.192 4.192 19 N -0.589 5.589 20 Si 0.772 3.228 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.168 1.168 24 C -0.182 4.182 25 C 0.293 3.707 26 O -0.452 6.452 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.172 0.828 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.610 -18.899 20.828 32.663 hybrid contribution 1.278 0.666 -0.155 1.449 sum -15.333 -18.233 20.674 31.543 Atomic orbital electron populations 1.21683 0.94039 1.01959 1.02283 1.21893 0.97563 0.95489 1.02603 1.21194 0.93966 0.93736 0.85295 1.21910 0.95917 0.97479 1.02275 1.21726 1.00289 0.96383 1.02141 1.48398 1.50294 1.29105 1.05883 1.22367 0.97068 0.86309 0.95189 1.22177 0.97857 0.91722 0.98842 0.80344 1.24128 0.83762 0.80950 0.81079 1.90648 1.53291 1.62986 1.34347 1.86474 1.52346 1.52035 1.36395 1.23124 0.87797 0.89498 0.99175 1.21314 0.99540 0.98184 0.93986 1.19444 0.94777 0.94831 0.95635 1.21405 1.18860 1.22159 0.94702 0.94556 1.26007 0.98332 0.96156 0.98750 1.70060 1.34546 1.30203 1.24132 0.85675 0.79269 0.77604 0.80229 1.19369 1.20814 1.16816 1.22424 1.05269 0.93285 0.97239 1.21256 0.79204 0.84720 0.85478 1.90684 1.39872 1.30081 1.84525 0.91200 0.92949 0.92681 0.93289 0.89820 0.87008 0.89440 0.93701 0.93838 0.93584 0.91656 0.88962 0.85359 0.91961 0.90769 0.91452 0.92174 0.96152 0.95496 0.92402 0.82796 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.80 71.98 0.71 -0.74 16 2 C -0.14 -1.96 5.36 30.59 0.16 -1.80 16 3 C 0.16 2.41 2.26 45.00 0.10 2.51 16 4 C -0.14 -2.67 5.36 30.60 0.16 -2.51 16 5 C -0.15 -3.19 9.80 71.98 0.71 -2.49 16 6 N -0.60 -9.73 1.74 -794.01 -1.38 -11.11 16 7 C 0.11 1.15 6.63 86.83 0.58 1.73 16 8 C -0.09 -1.06 3.66 -10.48 -0.04 -1.10 16 9 H 0.18 0.73 8.14 -2.39 -0.02 0.71 16 10 C 0.46 10.47 7.20 71.24 0.51 10.98 16 11 O -0.52 -14.58 13.57 21.95 0.30 -14.28 16 12 O -0.36 -9.76 10.20 -51.31 -0.52 -10.28 16 13 C 0.08 2.47 5.47 71.98 0.39 2.86 16 14 C -0.09 -3.52 5.53 30.60 0.17 -3.36 16 15 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 16 C -0.53 -30.60 9.66 25.60 0.25 -30.36 16 17 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 18 C 0.00 0.27 5.47 84.66 0.46 0.73 16 19 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 20 Si 0.95 44.09 27.47 68.60 1.88 45.98 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 24 C -0.14 -2.12 6.40 30.59 0.20 -1.92 16 25 C 0.50 10.97 7.37 87.90 0.65 11.62 16 26 O -0.57 -17.50 15.02 -3.03 -0.05 -17.54 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.55 7.75 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 1.03 6.62 -2.39 -0.02 1.01 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 1.17 8.07 -2.39 -0.02 1.15 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.18 6.65 -2.39 -0.02 1.16 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.21 5.96 -2.39 -0.01 1.20 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.14 7.02 -2.39 -0.02 1.12 16 39 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 41 H 0.07 2.27 8.13 -2.38 -0.02 2.25 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 45 H 0.03 1.19 7.20 -2.39 -0.02 1.18 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 1.83 7.89 -2.39 -0.02 1.82 16 Total: -1.00 -76.57 383.56 6.53 -70.05 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.86 Total: 10.54 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 5.13 Total: -14.15 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.08 Total: -70.31 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.27 Total: -42.10 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -76.57 6.53 -70.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915582245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.737 kcal (2) G-P(sol) polarization free energy of solvation -76.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds