Wall clock time and date at job start Fri Apr 10 2020 22:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47260 * 2 1 4 4 C 1.52999 * 109.47583 * 120.00396 * 2 1 3 5 5 N 1.46898 * 109.46962 * 58.24219 * 4 2 1 6 6 C 1.46897 * 111.00258 * 74.17507 * 5 4 2 7 7 C 1.50693 * 109.47235 * 284.22273 * 6 5 4 8 8 H 1.07997 * 120.00451 * 354.81585 * 7 6 5 9 9 C 1.37885 * 120.00037 * 174.82301 * 7 6 5 10 10 N 1.31516 * 120.00052 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99796 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47421 * 89.99927 * 11 9 7 13 13 H 1.48504 * 109.46891 * 210.00193 * 11 9 7 14 14 H 1.48500 * 109.47038 * 329.99716 * 11 9 7 15 15 C 1.46896 * 111.00053 * 198.13409 * 5 4 2 16 16 C 1.53000 * 109.47396 * 79.01263 * 15 5 4 17 17 H 1.08994 * 109.46866 * 52.27383 * 16 15 5 18 18 O 1.42895 * 109.47178 * 292.27221 * 16 15 5 19 19 C 1.53006 * 109.47034 * 172.27030 * 16 15 5 20 20 O 1.42901 * 109.46912 * 185.00405 * 19 16 15 21 21 C 1.42904 * 113.99743 * 180.02562 * 20 19 16 22 22 C 1.50701 * 109.46904 * 179.97438 * 21 20 19 23 23 C 1.34518 * 125.79442 * 89.99762 * 22 21 20 24 24 C 1.41376 * 106.84092 * 179.79293 * 23 22 21 25 25 C 1.34512 * 106.84362 * 0.36998 * 24 23 22 26 26 O 1.34302 * 108.41986 * 359.62993 * 25 24 23 27 27 H 1.08999 * 109.47674 * 59.99840 * 1 2 3 28 28 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47523 * 299.99633 * 1 2 3 30 30 H 1.08997 * 109.47122 * 240.00776 * 2 1 3 31 31 H 1.08994 * 109.47213 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47411 * 300.00471 * 3 2 1 33 33 H 1.09006 * 109.46553 * 59.99773 * 3 2 1 34 34 H 1.09004 * 109.46451 * 298.24426 * 4 2 1 35 35 H 1.08990 * 109.47420 * 178.24519 * 4 2 1 36 36 H 1.09003 * 109.46900 * 44.21772 * 6 5 4 37 37 H 1.08992 * 109.47228 * 164.21661 * 6 5 4 38 38 H 0.96996 * 119.99834 * 180.02562 * 10 9 7 39 39 H 1.09006 * 109.46938 * 319.01279 * 15 5 4 40 40 H 1.09002 * 109.47438 * 199.01480 * 15 5 4 41 41 H 0.96705 * 113.99649 * 299.99287 * 18 16 15 42 42 H 1.08997 * 109.46943 * 65.00335 * 19 16 15 43 43 H 1.09005 * 109.46853 * 304.99879 * 19 16 15 44 44 H 1.08991 * 109.47598 * 59.99719 * 21 20 19 45 45 H 1.09003 * 109.46777 * 299.99248 * 21 20 19 46 46 H 1.07994 * 126.57522 * 0.03889 * 23 22 21 47 47 H 1.08001 * 126.58008 * 180.23328 * 24 23 22 48 48 H 1.07997 * 125.79404 * 179.88961 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.5160 -2.0935 1.2705 6 6 2.2065 -2.9361 0.2850 7 6 1.7023 -2.6089 -1.0968 8 1 0.8868 -1.9122 -1.2233 9 6 2.2819 -3.1992 -2.1999 10 7 1.8415 -2.9140 -3.4059 11 14 3.6927 -4.4038 -1.9814 12 1 3.1516 -5.7794 -1.8391 13 1 4.5840 -4.3427 -3.1676 14 1 4.4642 -4.0469 -0.7637 15 6 1.6113 -2.6725 2.6171 16 6 0.4661 -2.1426 3.4824 17 1 -0.4814 -2.3001 2.9671 18 8 0.6539 -0.7458 3.7178 19 6 0.4498 -2.8875 4.8188 20 8 -0.6877 -2.4761 5.5795 21 6 -0.7974 -3.1153 6.8529 22 6 -2.0252 -2.6088 7.5651 23 6 -3.2573 -3.1426 7.4853 24 6 -4.0969 -2.3602 8.3110 25 6 -3.3294 -1.3902 8.8396 26 8 -2.0748 -1.5476 8.3868 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6765 1.9563 0.8900 34 1 1.7026 -0.1896 2.1389 35 1 3.1295 -0.7486 1.2335 36 1 3.2791 -2.7482 0.3343 37 1 2.0111 -3.9858 0.5041 38 1 2.2491 -3.3295 -4.1818 39 1 2.5648 -2.3937 3.0659 40 1 1.5445 -3.7585 2.5513 41 1 1.4791 -0.5313 4.1742 42 1 1.3599 -2.6587 5.3733 43 1 0.3958 -3.9607 4.6359 44 1 0.0867 -2.8909 7.4495 45 1 -0.8771 -4.1933 6.7126 46 1 -3.5484 -4.0057 6.9052 47 1 -5.1525 -2.5109 8.4826 48 1 -3.6642 -0.6185 9.5169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916633047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:23 Heat of formation + Delta-G solvation = -72.252349 kcal Electronic energy + Delta-G solvation = -26355.354308 eV Core-core repulsion = 22605.760102 eV Total energy + Delta-G solvation = -3749.594207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.76771 -38.92507 -37.66692 -36.01849 -33.55121 -33.26338 -32.44348 -31.45506 -29.97305 -27.85292 -26.32050 -26.23532 -25.27583 -23.49420 -21.99518 -21.48857 -20.75062 -20.55757 -18.98916 -17.77223 -17.25464 -16.69008 -16.55866 -16.17283 -15.72272 -15.43213 -14.99524 -14.81192 -14.28332 -13.98848 -13.63428 -13.47856 -13.09017 -13.05891 -12.90582 -12.67089 -12.49015 -12.40728 -12.20341 -11.89571 -11.66683 -11.50503 -11.24060 -11.08201 -10.80008 -10.59326 -10.41539 -10.16581 -10.15354 -9.95410 -9.88751 -9.85121 -9.79043 -9.20352 -8.92610 -8.78691 -8.45882 -7.31083 -6.01325 -3.96017 1.38351 2.32713 2.69043 3.27429 3.35533 3.36420 3.60347 4.39811 4.43481 4.55432 4.71315 4.74609 4.77165 4.92676 4.99638 5.07670 5.19527 5.27195 5.32981 5.41549 5.52367 5.55207 5.67759 5.80470 5.81693 5.89720 5.91318 6.14588 6.23690 6.24899 6.28740 6.42418 6.53448 6.64743 6.76094 6.80120 6.84534 6.88885 6.90572 6.98253 7.09998 7.45088 7.58474 7.71301 7.83086 7.97087 8.12485 8.70632 9.12820 9.60198 11.10375 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002747 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.329120 B =10189.818451 C =10908.269121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.067 3.933 5 N -0.517 5.517 6 C 0.157 3.843 7 C -0.507 4.507 8 H 0.102 0.898 9 C 0.067 3.933 10 N -0.899 5.899 11 Si 0.868 3.132 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.026 3.974 16 C 0.118 3.882 17 H 0.115 0.885 18 O -0.541 6.541 19 C 0.031 3.969 20 O -0.369 6.369 21 C 0.141 3.859 22 C -0.015 4.015 23 C -0.187 4.187 24 C -0.218 4.218 25 C -0.034 4.034 26 O -0.172 6.172 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.115 0.885 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.013 0.987 36 H -0.010 1.010 37 H 0.018 0.982 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.363 0.637 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.650 0.901 23.115 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.124 4.124 3 C -0.200 4.200 4 C -0.061 4.061 5 N -0.241 5.241 6 C 0.031 3.969 7 C -0.545 4.545 8 H 0.119 0.881 9 C -0.134 4.134 10 N -0.538 5.538 11 Si 0.696 3.304 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.195 1.195 15 C -0.104 4.104 16 C 0.059 3.941 17 H 0.133 0.867 18 O -0.345 6.345 19 C -0.046 4.046 20 O -0.288 6.288 21 C 0.065 3.935 22 C -0.065 4.065 23 C -0.206 4.206 24 C -0.237 4.237 25 C -0.102 4.102 26 O -0.067 6.067 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.031 0.969 36 H 0.008 0.992 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.209 0.791 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.168 0.832 47 H 0.167 0.833 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.563 1.215 22.476 23.186 hybrid contribution 2.150 -1.197 0.597 2.533 sum -3.413 0.017 23.072 23.323 Atomic orbital electron populations 1.21570 0.95483 1.02416 0.98542 1.21469 0.96369 0.93692 1.00915 1.21824 0.99909 0.97833 1.00436 1.22282 0.95128 0.89351 0.99338 1.61797 1.57665 1.02434 1.02170 1.20349 0.91823 0.92106 0.92592 1.21348 1.19017 1.26645 0.87515 0.88079 1.24918 0.96723 0.96442 0.95328 1.69885 1.42177 1.43975 0.97787 0.86979 0.83398 0.82301 0.77736 1.20384 1.21368 1.19461 1.22642 0.95542 0.99887 0.92294 1.22020 1.00896 0.80507 0.90723 0.86676 1.86703 1.44299 1.23320 1.80191 1.23390 0.88087 0.99412 0.93736 1.88080 1.46428 1.66207 1.28128 1.20608 0.92387 0.95877 0.84645 1.21962 0.97252 0.90026 0.97233 1.21673 0.92140 1.03564 1.03211 1.21868 1.01278 0.98151 1.02418 1.24090 0.81287 1.02023 1.02818 1.84019 1.31126 1.41698 1.49902 0.94912 0.90979 0.94695 0.86686 0.93899 0.93346 0.94002 0.90401 0.96897 0.99211 0.96422 0.92776 0.95367 0.90581 0.79085 0.93065 0.92065 0.91710 0.90078 0.83207 0.83264 0.77965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.32 37.15 0.31 -2.15 16 2 C -0.11 -2.13 2.39 -90.62 -0.22 -2.35 16 3 C -0.14 -2.43 9.19 37.16 0.34 -2.09 16 4 C 0.07 1.26 4.22 -3.83 -0.02 1.24 16 5 N -0.52 -10.21 3.53 -236.09 -0.83 -11.04 16 6 C 0.16 3.65 3.86 -4.98 -0.02 3.63 16 7 C -0.51 -13.68 7.50 -34.44 -0.26 -13.94 16 8 H 0.10 2.90 4.70 -52.49 -0.25 2.66 16 9 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 10 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 11 Si 0.87 21.06 27.57 -169.99 -4.69 16.37 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.33 6.40 56.52 0.36 -5.97 16 15 C 0.03 0.40 4.82 -3.83 -0.02 0.38 16 16 C 0.12 1.65 3.46 -26.73 -0.09 1.56 16 17 H 0.12 1.87 8.14 -51.93 -0.42 1.45 16 18 O -0.54 -7.85 10.70 -40.08 -0.43 -8.28 16 19 C 0.03 0.34 5.57 37.16 0.21 0.55 16 20 O -0.37 -4.74 10.29 -40.08 -0.41 -5.15 16 21 C 0.14 1.39 6.47 36.01 0.23 1.63 16 22 C -0.01 -0.17 6.95 -35.62 -0.25 -0.41 16 23 C -0.19 -1.94 10.81 -39.70 -0.43 -2.37 16 24 C -0.22 -1.99 10.91 -39.71 -0.43 -2.43 16 25 C -0.03 -0.30 12.09 29.41 0.36 0.05 16 26 O -0.17 -1.99 10.65 5.70 0.06 -1.93 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.60 6.55 -51.93 -0.34 1.26 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.12 2.79 5.07 -51.93 -0.26 2.53 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.33 5.06 -51.93 -0.26 1.07 16 35 H 0.01 0.25 7.77 -51.93 -0.40 -0.15 16 36 H -0.01 -0.23 6.45 -51.93 -0.33 -0.57 16 37 H 0.02 0.41 7.25 -51.93 -0.38 0.03 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.03 0.40 7.95 -51.93 -0.41 -0.02 16 40 H 0.08 1.12 7.52 -51.93 -0.39 0.73 16 41 H 0.36 3.97 8.86 45.56 0.40 4.37 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 47 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -32.37 380.41 -7.48 -39.85 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.30 Total: 5.48 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.38 Total: -14.91 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.06 Total: -37.15 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.78 Total: -15.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.69 Total: 16.37 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.37 -7.48 -39.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916633047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.406 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds