Wall clock time and date at job start Fri Apr 10 2020 22:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47260 * 2 1 4 4 C 1.52999 * 109.47583 * 120.00396 * 2 1 3 5 5 N 1.46898 * 109.46962 * 58.24219 * 4 2 1 6 6 C 1.46897 * 111.00258 * 74.17507 * 5 4 2 7 7 C 1.50693 * 109.47235 * 284.22273 * 6 5 4 8 8 H 1.07997 * 120.00451 * 354.81585 * 7 6 5 9 9 C 1.37885 * 120.00037 * 174.82301 * 7 6 5 10 10 N 1.31516 * 120.00052 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99796 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47421 * 89.99927 * 11 9 7 13 13 H 1.48504 * 109.46891 * 210.00193 * 11 9 7 14 14 H 1.48500 * 109.47038 * 329.99716 * 11 9 7 15 15 C 1.46896 * 111.00053 * 198.13409 * 5 4 2 16 16 C 1.53000 * 109.47396 * 79.01263 * 15 5 4 17 17 H 1.08994 * 109.46866 * 52.27383 * 16 15 5 18 18 O 1.42895 * 109.47178 * 292.27221 * 16 15 5 19 19 C 1.53006 * 109.47034 * 172.27030 * 16 15 5 20 20 O 1.42901 * 109.46912 * 185.00405 * 19 16 15 21 21 C 1.42904 * 113.99743 * 180.02562 * 20 19 16 22 22 C 1.50701 * 109.46904 * 179.97438 * 21 20 19 23 23 C 1.34518 * 125.79442 * 89.99762 * 22 21 20 24 24 C 1.41376 * 106.84092 * 179.79293 * 23 22 21 25 25 C 1.34512 * 106.84362 * 0.36998 * 24 23 22 26 26 O 1.34302 * 108.41986 * 359.62993 * 25 24 23 27 27 H 1.08999 * 109.47674 * 59.99840 * 1 2 3 28 28 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47523 * 299.99633 * 1 2 3 30 30 H 1.08997 * 109.47122 * 240.00776 * 2 1 3 31 31 H 1.08994 * 109.47213 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47411 * 300.00471 * 3 2 1 33 33 H 1.09006 * 109.46553 * 59.99773 * 3 2 1 34 34 H 1.09004 * 109.46451 * 298.24426 * 4 2 1 35 35 H 1.08990 * 109.47420 * 178.24519 * 4 2 1 36 36 H 1.09003 * 109.46900 * 44.21772 * 6 5 4 37 37 H 1.08992 * 109.47228 * 164.21661 * 6 5 4 38 38 H 0.96996 * 119.99834 * 180.02562 * 10 9 7 39 39 H 1.09006 * 109.46938 * 319.01279 * 15 5 4 40 40 H 1.09002 * 109.47438 * 199.01480 * 15 5 4 41 41 H 0.96705 * 113.99649 * 299.99287 * 18 16 15 42 42 H 1.08997 * 109.46943 * 65.00335 * 19 16 15 43 43 H 1.09005 * 109.46853 * 304.99879 * 19 16 15 44 44 H 1.08991 * 109.47598 * 59.99719 * 21 20 19 45 45 H 1.09003 * 109.46777 * 299.99248 * 21 20 19 46 46 H 1.07994 * 126.57522 * 0.03889 * 23 22 21 47 47 H 1.08001 * 126.58008 * 180.23328 * 24 23 22 48 48 H 1.07997 * 125.79404 * 179.88961 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.5160 -2.0935 1.2705 6 6 2.2065 -2.9361 0.2850 7 6 1.7023 -2.6089 -1.0968 8 1 0.8868 -1.9122 -1.2233 9 6 2.2819 -3.1992 -2.1999 10 7 1.8415 -2.9140 -3.4059 11 14 3.6927 -4.4038 -1.9814 12 1 3.1516 -5.7794 -1.8391 13 1 4.5840 -4.3427 -3.1676 14 1 4.4642 -4.0469 -0.7637 15 6 1.6113 -2.6725 2.6171 16 6 0.4661 -2.1426 3.4824 17 1 -0.4814 -2.3001 2.9671 18 8 0.6539 -0.7458 3.7178 19 6 0.4498 -2.8875 4.8188 20 8 -0.6877 -2.4761 5.5795 21 6 -0.7974 -3.1153 6.8529 22 6 -2.0252 -2.6088 7.5651 23 6 -3.2573 -3.1426 7.4853 24 6 -4.0969 -2.3602 8.3110 25 6 -3.3294 -1.3902 8.8396 26 8 -2.0748 -1.5476 8.3868 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6765 1.9563 0.8900 34 1 1.7026 -0.1896 2.1389 35 1 3.1295 -0.7486 1.2335 36 1 3.2791 -2.7482 0.3343 37 1 2.0111 -3.9858 0.5041 38 1 2.2491 -3.3295 -4.1818 39 1 2.5648 -2.3937 3.0659 40 1 1.5445 -3.7585 2.5513 41 1 1.4791 -0.5313 4.1742 42 1 1.3599 -2.6587 5.3733 43 1 0.3958 -3.9607 4.6359 44 1 0.0867 -2.8909 7.4495 45 1 -0.8771 -4.1933 6.7126 46 1 -3.5484 -4.0057 6.9052 47 1 -5.1525 -2.5109 8.4826 48 1 -3.6642 -0.6185 9.5169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916633047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:23 Heat of formation + Delta-G solvation = -95.137069 kcal Electronic energy + Delta-G solvation = -26356.346664 eV Core-core repulsion = 22605.760102 eV Total energy + Delta-G solvation = -3750.586563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.48718 -40.07563 -38.83395 -37.24606 -35.11813 -34.44108 -33.99669 -32.29798 -31.13542 -29.58229 -27.79793 -27.31191 -26.34244 -25.01581 -22.74785 -22.70825 -22.15629 -21.46776 -20.63833 -18.85141 -18.49125 -17.96452 -17.51980 -17.15088 -16.71073 -16.52886 -16.46324 -15.86832 -15.79117 -15.42068 -15.01624 -14.80450 -14.45839 -14.16251 -14.06450 -13.88693 -13.77201 -13.57969 -13.19513 -13.18577 -12.94563 -12.85564 -12.68516 -12.62407 -12.38056 -12.14099 -11.98192 -11.71957 -11.57290 -11.47990 -11.37253 -10.99709 -10.89028 -10.70975 -10.64030 -10.37597 -9.51540 -8.85789 -8.15685 -6.13740 0.65100 1.35835 1.37608 1.46169 1.62853 2.02643 2.40506 2.72587 3.15327 3.37770 3.56119 3.78674 4.08711 4.10219 4.13492 4.14552 4.21102 4.29880 4.33692 4.34430 4.39218 4.46849 4.52934 4.58769 4.71877 4.79457 4.85966 4.89146 4.94355 4.99301 5.03554 5.11375 5.14687 5.16017 5.21473 5.24926 5.33739 5.50114 5.57234 5.66331 5.75644 5.94735 6.11724 6.17283 6.19423 6.54502 6.78867 6.93571 6.96737 7.45771 8.99109 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002747 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.329120 B =10189.818451 C =10908.269121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.072 3.928 5 N -0.534 5.534 6 C 0.166 3.834 7 C -0.501 4.501 8 H 0.071 0.929 9 C 0.005 3.995 10 N -0.950 5.950 11 Si 0.934 3.066 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.253 1.253 15 C 0.026 3.974 16 C 0.127 3.873 17 H 0.084 0.916 18 O -0.559 6.559 19 C 0.038 3.962 20 O -0.399 6.399 21 C 0.140 3.860 22 C -0.043 4.043 23 C -0.199 4.199 24 C -0.233 4.233 25 C -0.035 4.035 26 O -0.192 6.192 27 H 0.027 0.973 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.010 0.990 36 H -0.014 1.014 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.380 0.620 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.159 0.841 47 H 0.170 0.830 48 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 0.668 26.150 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.126 4.126 3 C -0.193 4.193 4 C -0.055 4.055 5 N -0.258 5.258 6 C 0.039 3.961 7 C -0.540 4.540 8 H 0.089 0.911 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.759 3.241 12 H -0.195 1.195 13 H -0.217 1.217 14 H -0.177 1.177 15 C -0.102 4.102 16 C 0.067 3.933 17 H 0.102 0.898 18 O -0.366 6.366 19 C -0.039 4.039 20 O -0.319 6.319 21 C 0.064 3.936 22 C -0.092 4.092 23 C -0.218 4.218 24 C -0.252 4.252 25 C -0.102 4.102 26 O -0.089 6.089 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.029 0.971 36 H 0.004 0.996 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.177 0.823 47 H 0.188 0.812 48 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.662 0.979 25.555 25.995 hybrid contribution 1.734 -1.030 -0.284 2.037 sum -2.928 -0.051 25.270 25.440 Atomic orbital electron populations 1.21416 0.95748 1.00605 0.98967 1.21354 0.96101 0.95492 0.99673 1.21738 1.00365 0.95711 1.01461 1.22276 0.94835 0.89024 0.99364 1.61665 1.57459 1.02568 1.04069 1.20120 0.91491 0.92910 0.91570 1.21642 1.17653 1.24964 0.89724 0.91092 1.25743 0.99711 0.98701 0.94964 1.70047 1.44305 1.46067 0.98762 0.85915 0.80131 0.80032 0.78013 1.19495 1.21667 1.17685 1.22722 0.97264 1.00235 0.90023 1.21757 0.98722 0.80742 0.92054 0.89765 1.86646 1.45657 1.23667 1.80617 1.23275 0.88722 0.99671 0.92195 1.88019 1.47219 1.67199 1.29491 1.20806 0.92539 0.96758 0.83492 1.22344 0.98212 0.90558 0.98098 1.22013 0.92407 1.04028 1.03398 1.22233 1.02397 0.98174 1.02376 1.24883 0.80355 1.02459 1.02488 1.84007 1.32478 1.42058 1.50329 0.95391 0.93877 0.93128 0.91463 0.93124 0.93453 0.91824 0.88084 0.97134 0.99603 0.95805 0.92973 0.93056 0.89837 0.77132 0.90550 0.90461 0.90303 0.87979 0.82300 0.81206 0.74474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.49 8.32 71.98 0.60 -3.89 16 2 C -0.11 -4.34 2.39 -10.80 -0.03 -4.37 16 3 C -0.13 -4.45 9.19 71.98 0.66 -3.79 16 4 C 0.07 2.64 4.22 86.30 0.36 3.00 16 5 N -0.53 -20.62 3.53 -900.84 -3.18 -23.80 16 6 C 0.17 7.60 3.86 85.56 0.33 7.93 16 7 C -0.50 -27.76 7.50 25.60 0.19 -27.57 16 8 H 0.07 4.29 4.70 -2.91 -0.01 4.28 16 9 C 0.01 0.29 5.47 84.66 0.46 0.75 16 10 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 11 Si 0.93 43.65 27.57 68.60 1.89 45.54 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 14 H -0.25 -11.01 6.40 99.48 0.64 -10.38 16 15 C 0.03 0.74 4.82 86.30 0.42 1.16 16 16 C 0.13 3.31 3.46 30.60 0.11 3.41 16 17 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 18 O -0.56 -14.95 10.70 -144.35 -1.55 -16.50 16 19 C 0.04 0.73 5.57 71.98 0.40 1.14 16 20 O -0.40 -9.54 10.29 -144.35 -1.49 -11.02 16 21 C 0.14 2.49 6.47 71.24 0.46 2.95 16 22 C -0.04 -0.92 6.95 24.83 0.17 -0.75 16 23 C -0.20 -3.96 10.81 22.19 0.24 -3.72 16 24 C -0.23 -3.91 10.91 22.19 0.24 -3.67 16 25 C -0.03 -0.55 12.09 66.97 0.81 0.26 16 26 O -0.19 -4.23 10.65 -2.51 -0.03 -4.26 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 1.98 6.55 -2.39 -0.02 1.97 16 29 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.07 3.40 5.07 -2.39 -0.01 3.39 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.10 3.21 5.06 -2.39 -0.01 3.20 16 35 H 0.01 0.39 7.77 -2.39 -0.02 0.37 16 36 H -0.01 -0.64 6.45 -2.39 -0.02 -0.65 16 37 H 0.02 1.07 7.25 -2.39 -0.02 1.05 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.05 1.25 7.95 -2.38 -0.02 1.23 16 40 H 0.08 2.24 7.52 -2.39 -0.02 2.23 16 41 H 0.38 7.07 8.86 -74.05 -0.66 6.42 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 47 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 48 H 0.24 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -72.76 380.41 1.60 -71.16 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.22 Total: 24.71 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 5.43 Total: -27.16 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.88 Total: -82.48 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -3.06 Total: -31.77 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.89 Total: 45.54 kcal Total: -72.76 1.60 -71.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916633047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.976 kcal (2) G-P(sol) polarization free energy of solvation -72.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds