Wall clock time and date at job start Fri Apr 10 2020 22:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47222 * 2 1 4 4 C 1.52999 * 109.47222 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47109 * 55.00133 * 4 3 2 6 6 C 1.52997 * 109.46973 * 174.99956 * 4 3 2 7 7 N 1.46496 * 109.47127 * 295.00002 * 4 3 2 8 8 C 1.46862 * 124.34139 * 119.97485 * 7 4 3 9 9 C 1.54486 * 105.42662 * 197.02256 * 8 7 4 10 10 H 1.08997 * 110.97003 * 216.44432 * 9 8 7 11 11 C 1.50693 * 110.97196 * 92.71365 * 9 8 7 12 12 O 1.20829 * 120.00013 * 3.08965 * 11 9 8 13 13 O 1.34222 * 120.00135 * 183.09237 * 11 9 8 14 14 C 1.45200 * 117.00094 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.47378 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 C 1.54632 * 101.79474 * 334.57888 * 9 8 7 26 26 C 1.34423 * 124.34766 * 299.97763 * 7 4 3 27 27 O 1.21278 * 124.94649 * 359.62144 * 26 7 4 28 28 H 1.09000 * 109.46980 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47454 * 300.00145 * 1 2 3 30 30 H 1.09000 * 109.47076 * 60.00017 * 1 2 3 31 31 H 1.08996 * 109.47215 * 240.00171 * 2 1 3 32 32 H 1.09000 * 109.47076 * 119.99982 * 2 1 3 33 33 H 1.09002 * 109.47025 * 59.99593 * 3 2 1 34 34 H 1.09000 * 109.47081 * 299.99980 * 3 2 1 35 35 H 1.09004 * 109.47058 * 60.00146 * 6 4 3 36 36 H 1.08997 * 109.47266 * 179.97438 * 6 4 3 37 37 H 1.09003 * 109.47484 * 300.00142 * 6 4 3 38 38 H 1.08997 * 110.25859 * 78.04179 * 8 7 4 39 39 H 1.08997 * 110.27761 * 316.01250 * 8 7 4 40 40 H 1.09000 * 109.47147 * 59.99859 * 14 13 11 41 41 H 1.08996 * 109.47221 * 300.00104 * 14 13 11 42 42 H 1.09000 * 109.46866 * 59.99970 * 15 14 13 43 43 H 1.09001 * 109.46611 * 300.00087 * 15 14 13 44 44 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 45 45 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 46 46 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 47 47 H 1.08997 * 110.48395 * 143.49817 * 25 9 8 48 48 H 1.09002 * 110.48622 * 266.00744 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1251 7 7 4.0578 0.8590 1.2527 8 6 4.9051 -0.3378 1.3342 9 6 4.7991 -0.8174 2.7989 10 1 5.7516 -1.2150 3.1491 11 6 3.7019 -1.8386 2.9539 12 8 3.0840 -2.2132 1.9855 13 8 3.4108 -2.3319 4.1678 14 6 2.3424 -3.3124 4.2420 15 6 2.1573 -3.7561 5.6946 16 6 1.0320 -4.7897 5.7726 17 6 0.8493 -5.2262 7.2035 18 1 1.4764 -4.8115 7.9788 19 6 -0.1150 -6.1588 7.5219 20 7 -0.8749 -6.6679 6.5769 21 14 -0.3419 -6.6993 9.2955 22 1 0.6307 -5.9834 10.1595 23 1 -1.7239 -6.3820 9.7368 24 1 -0.1126 -8.1628 9.4002 25 6 4.4424 0.4943 3.5360 26 6 3.7873 1.3502 2.4744 27 8 3.1152 2.3356 2.6938 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.7163 3.4691 0.7165 36 1 5.1700 2.8796 -0.1242 37 1 3.7171 3.3137 -1.0567 38 1 5.9380 -0.0860 1.0936 39 1 4.5365 -1.1084 0.6573 40 1 2.5987 -4.1762 3.6286 41 1 1.4163 -2.8691 3.8763 42 1 1.9012 -2.8925 6.3084 43 1 3.0836 -4.1996 6.0598 44 1 1.2885 -5.6533 5.1589 45 1 0.1056 -4.3466 5.4073 46 1 -1.5530 -7.3243 6.8010 47 1 3.7456 0.2968 4.3505 48 1 5.3438 0.9763 3.9147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919585157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:27 Heat of formation + Delta-G solvation = -151.465752 kcal Electronic energy + Delta-G solvation = -26636.788791 eV Core-core repulsion = 22883.759634 eV Total energy + Delta-G solvation = -3753.029158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35543 -39.87874 -36.96401 -36.57941 -35.83270 -34.03320 -33.03403 -31.74424 -30.33587 -28.06910 -27.19123 -26.82629 -24.49480 -22.89841 -22.73576 -21.46859 -20.57259 -20.21230 -19.14849 -17.91719 -17.08491 -16.92885 -16.45722 -16.15073 -15.72655 -15.21391 -14.86233 -14.48802 -14.32788 -14.11117 -14.02585 -13.80202 -13.44091 -13.19597 -13.04413 -12.81027 -12.33981 -12.28361 -12.16684 -12.09703 -12.03192 -11.95380 -11.75916 -11.63042 -11.14184 -11.01072 -10.82876 -10.72707 -10.68074 -10.63716 -10.44368 -10.36481 -9.80019 -9.75969 -9.53948 -9.17453 -8.93351 -8.41119 -6.05625 -4.08680 2.15124 2.37359 2.62571 2.75822 3.28900 3.36473 3.40675 3.89709 3.99173 4.37541 4.41845 4.50978 4.64692 4.76627 4.85694 4.97167 5.08239 5.09473 5.20726 5.24865 5.30574 5.33002 5.38844 5.43491 5.47755 5.52093 5.52785 5.56294 5.66924 5.78967 5.84395 5.94053 5.95832 6.10995 6.17628 6.32576 6.41539 6.46469 6.49671 6.78357 6.89715 6.94443 7.57635 7.68049 7.79027 7.92644 7.97483 8.33441 8.97808 9.55892 11.05867 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.002653 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.449179 B =10553.495327 C =11113.550910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.137 4.137 4 C 0.158 3.842 5 H 0.088 0.912 6 C -0.167 4.167 7 N -0.611 5.611 8 C 0.112 3.888 9 C -0.099 4.099 10 H 0.136 0.864 11 C 0.462 3.538 12 O -0.500 6.500 13 O -0.354 6.354 14 C 0.069 3.931 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.147 4.147 26 C 0.518 3.482 27 O -0.524 6.524 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 47 H 0.114 0.886 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 16.230 -15.029 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.175 4.175 4 C 0.056 3.944 5 H 0.106 0.894 6 C -0.225 4.225 7 N -0.346 5.346 8 C -0.011 4.011 9 C -0.119 4.119 10 H 0.154 0.846 11 C 0.304 3.696 12 O -0.388 6.388 13 O -0.270 6.270 14 C -0.003 4.003 15 C -0.147 4.147 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.188 4.188 26 C 0.306 3.694 27 O -0.400 6.400 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.133 0.867 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.396 16.517 -15.286 26.190 hybrid contribution -0.273 -0.650 0.818 1.080 sum 13.123 15.867 -14.468 25.166 Atomic orbital electron populations 1.21728 0.95948 1.01740 1.01299 1.21541 0.95930 0.95979 1.02816 1.22058 0.94016 0.98091 1.03305 1.21007 0.94404 0.94291 0.84680 0.89410 1.22176 1.01072 0.96136 1.03091 1.48366 1.51038 1.28769 1.06380 1.22116 0.95535 0.87969 0.95435 1.21962 0.98693 0.93733 0.97472 0.84639 1.23093 0.83510 0.80997 0.81959 1.90657 1.50053 1.58009 1.40060 1.86476 1.53625 1.55279 1.31598 1.23544 0.86863 0.88808 1.01132 1.21772 1.01637 1.00475 0.90772 1.19055 0.91973 0.92647 0.97646 1.21203 1.17975 1.23574 0.93163 0.92359 1.25034 0.95781 0.96233 0.97445 1.69973 1.21578 1.29531 1.32267 0.86493 0.78023 0.78404 0.84839 1.19651 1.20949 1.20970 1.22398 1.04268 0.93421 0.98672 1.20745 0.79910 0.84598 0.84180 1.90708 1.39122 1.26451 1.83728 0.92613 0.92944 0.93187 0.92508 0.90726 0.90374 0.91127 0.90948 0.92533 0.91482 0.89626 0.88303 0.91403 0.91509 0.92099 0.92095 0.96257 0.96245 0.92930 0.86723 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.36 16 2 C -0.13 -1.44 5.82 -26.73 -0.16 -1.60 16 3 C -0.14 -1.41 4.64 -26.73 -0.12 -1.53 16 4 C 0.16 1.39 2.87 -67.93 -0.19 1.20 16 5 H 0.09 0.62 8.07 -51.93 -0.42 0.21 16 6 C -0.17 -1.34 9.20 37.16 0.34 -1.00 16 7 N -0.61 -5.83 2.29 -164.77 -0.38 -6.20 16 8 C 0.11 0.83 6.66 -3.07 -0.02 0.81 16 9 C -0.10 -0.82 3.65 -90.14 -0.33 -1.15 16 10 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 11 C 0.46 6.06 7.22 36.00 0.26 6.32 16 12 O -0.50 -7.69 13.72 -18.75 -0.26 -7.95 16 13 O -0.35 -5.38 10.11 -39.24 -0.40 -5.77 16 14 C 0.07 1.22 5.47 37.16 0.20 1.43 16 15 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C -0.15 -1.31 6.40 -26.74 -0.17 -1.48 16 26 C 0.52 6.06 7.39 -10.86 -0.08 5.98 16 27 O -0.52 -7.96 15.07 5.56 0.08 -7.88 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.05 6.15 -51.93 -0.32 0.73 16 33 H 0.08 1.01 6.65 -51.93 -0.35 0.67 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.76 6.77 -51.93 -0.35 0.41 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.83 6.98 -51.93 -0.36 0.47 16 40 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 41 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.11 1.18 7.81 -51.93 -0.41 0.77 16 48 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -33.12 388.37 -8.49 -41.61 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -8.51 Total: -2.49 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.60 Total: -7.64 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.36 Total: -32.18 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.57 Total: -21.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.12 -8.49 -41.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919585157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.859 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds