Wall clock time and date at job start Fri Apr 10 2020 22:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47222 * 2 1 4 4 C 1.52999 * 109.47222 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47109 * 55.00133 * 4 3 2 6 6 C 1.52997 * 109.46973 * 174.99956 * 4 3 2 7 7 N 1.46496 * 109.47127 * 295.00002 * 4 3 2 8 8 C 1.46862 * 124.34139 * 119.97485 * 7 4 3 9 9 C 1.54486 * 105.42662 * 197.02256 * 8 7 4 10 10 H 1.08997 * 110.97003 * 216.44432 * 9 8 7 11 11 C 1.50693 * 110.97196 * 92.71365 * 9 8 7 12 12 O 1.20829 * 120.00013 * 3.08965 * 11 9 8 13 13 O 1.34222 * 120.00135 * 183.09237 * 11 9 8 14 14 C 1.45200 * 117.00094 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.47378 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 C 1.54632 * 101.79474 * 334.57888 * 9 8 7 26 26 C 1.34423 * 124.34766 * 299.97763 * 7 4 3 27 27 O 1.21278 * 124.94649 * 359.62144 * 26 7 4 28 28 H 1.09000 * 109.46980 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47454 * 300.00145 * 1 2 3 30 30 H 1.09000 * 109.47076 * 60.00017 * 1 2 3 31 31 H 1.08996 * 109.47215 * 240.00171 * 2 1 3 32 32 H 1.09000 * 109.47076 * 119.99982 * 2 1 3 33 33 H 1.09002 * 109.47025 * 59.99593 * 3 2 1 34 34 H 1.09000 * 109.47081 * 299.99980 * 3 2 1 35 35 H 1.09004 * 109.47058 * 60.00146 * 6 4 3 36 36 H 1.08997 * 109.47266 * 179.97438 * 6 4 3 37 37 H 1.09003 * 109.47484 * 300.00142 * 6 4 3 38 38 H 1.08997 * 110.25859 * 78.04179 * 8 7 4 39 39 H 1.08997 * 110.27761 * 316.01250 * 8 7 4 40 40 H 1.09000 * 109.47147 * 59.99859 * 14 13 11 41 41 H 1.08996 * 109.47221 * 300.00104 * 14 13 11 42 42 H 1.09000 * 109.46866 * 59.99970 * 15 14 13 43 43 H 1.09001 * 109.46611 * 300.00087 * 15 14 13 44 44 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 45 45 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 46 46 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 47 47 H 1.08997 * 110.48395 * 143.49817 * 25 9 8 48 48 H 1.09002 * 110.48622 * 266.00744 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1251 7 7 4.0578 0.8590 1.2527 8 6 4.9051 -0.3378 1.3342 9 6 4.7991 -0.8174 2.7989 10 1 5.7516 -1.2150 3.1491 11 6 3.7019 -1.8386 2.9539 12 8 3.0840 -2.2132 1.9855 13 8 3.4108 -2.3319 4.1678 14 6 2.3424 -3.3124 4.2420 15 6 2.1573 -3.7561 5.6946 16 6 1.0320 -4.7897 5.7726 17 6 0.8493 -5.2262 7.2035 18 1 1.4764 -4.8115 7.9788 19 6 -0.1150 -6.1588 7.5219 20 7 -0.8749 -6.6679 6.5769 21 14 -0.3419 -6.6993 9.2955 22 1 0.6307 -5.9834 10.1595 23 1 -1.7239 -6.3820 9.7368 24 1 -0.1126 -8.1628 9.4002 25 6 4.4424 0.4943 3.5360 26 6 3.7873 1.3502 2.4744 27 8 3.1152 2.3356 2.6938 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.7163 3.4691 0.7165 36 1 5.1700 2.8796 -0.1242 37 1 3.7171 3.3137 -1.0567 38 1 5.9380 -0.0860 1.0936 39 1 4.5365 -1.1084 0.6573 40 1 2.5987 -4.1762 3.6286 41 1 1.4163 -2.8691 3.8763 42 1 1.9012 -2.8925 6.3084 43 1 3.0836 -4.1996 6.0598 44 1 1.2885 -5.6533 5.1589 45 1 0.1056 -4.3466 5.4073 46 1 -1.5530 -7.3243 6.8010 47 1 3.7456 0.2968 4.3505 48 1 5.3438 0.9763 3.9147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919585157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:27 Heat of formation + Delta-G solvation = -169.695451 kcal Electronic energy + Delta-G solvation = -26637.579290 eV Core-core repulsion = 22883.759634 eV Total energy + Delta-G solvation = -3753.819657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.24197 -40.92235 -38.07386 -37.53439 -36.73072 -35.94514 -33.94221 -33.61830 -31.12668 -29.09411 -28.70267 -27.64441 -25.84302 -24.35236 -23.49931 -22.38642 -22.17881 -21.37056 -19.97519 -18.91371 -18.58353 -17.88802 -17.76403 -17.54302 -16.67784 -16.50160 -16.12276 -15.75474 -15.66166 -14.96565 -14.83281 -14.76354 -14.60486 -14.19720 -14.12098 -13.87283 -13.73706 -13.63433 -13.50491 -13.09654 -12.88886 -12.85877 -12.75548 -12.67130 -12.52382 -12.45329 -12.31173 -12.09090 -11.94466 -11.76735 -11.67359 -11.59665 -11.41354 -11.35257 -11.18774 -10.65234 -10.59263 -9.68407 -8.23133 -6.34560 1.11372 1.40661 1.41061 1.49776 1.54756 1.63042 2.02570 2.40460 3.11003 3.19658 3.28747 3.55897 3.70893 3.81534 3.98619 4.00927 4.03969 4.06252 4.28578 4.31744 4.38915 4.40544 4.53810 4.58820 4.62655 4.68046 4.74625 4.78547 4.79332 4.82871 4.88148 4.90671 4.95108 4.96012 5.06932 5.17398 5.25096 5.29539 5.37002 5.44109 5.54279 5.62372 5.70006 5.79101 6.14901 6.17921 6.67257 6.81880 7.15204 7.35202 8.89342 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.002653 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.449179 B =10553.495327 C =11113.550910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.131 4.131 4 C 0.153 3.847 5 H 0.114 0.886 6 C -0.158 4.158 7 N -0.609 5.609 8 C 0.112 3.888 9 C -0.086 4.086 10 H 0.182 0.818 11 C 0.455 3.545 12 O -0.526 6.526 13 O -0.354 6.354 14 C 0.081 3.919 15 C -0.094 4.094 16 C 0.026 3.974 17 C -0.541 4.541 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.259 1.259 23 H -0.280 1.280 24 H -0.277 1.277 25 C -0.142 4.142 26 C 0.504 3.496 27 O -0.571 6.571 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.071 0.929 44 H -0.002 1.002 45 H -0.007 1.007 46 H 0.264 0.736 47 H 0.097 0.903 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.893 16.675 -15.222 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.169 4.169 4 C 0.051 3.949 5 H 0.131 0.869 6 C -0.216 4.216 7 N -0.342 5.342 8 C -0.010 4.010 9 C -0.105 4.105 10 H 0.199 0.801 11 C 0.298 3.702 12 O -0.415 6.415 13 O -0.271 6.271 14 C 0.008 3.992 15 C -0.131 4.131 16 C -0.011 4.011 17 C -0.579 4.579 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.183 1.183 23 H -0.205 1.205 24 H -0.203 1.203 25 C -0.182 4.182 26 C 0.293 3.707 27 O -0.451 6.451 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.016 0.984 45 H 0.011 0.989 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.178 16.955 -15.500 28.097 hybrid contribution -1.151 -0.773 0.777 1.589 sum 15.026 16.182 -14.723 26.541 Atomic orbital electron populations 1.21737 0.96316 1.01206 1.01510 1.21487 0.95670 0.96697 1.02020 1.21995 0.95557 0.96837 1.02545 1.21163 0.93172 0.95331 0.85236 0.86853 1.22095 1.01828 0.95095 1.02603 1.48522 1.50659 1.28980 1.06073 1.22394 0.97367 0.86798 0.94448 1.22193 0.98255 0.91714 0.98341 0.80092 1.24215 0.84091 0.81174 0.80674 1.90657 1.51159 1.59035 1.40611 1.86463 1.52543 1.54776 1.33281 1.23066 0.87450 0.89484 0.99232 1.21450 0.99973 0.99092 0.92627 1.18934 0.92741 0.93155 0.96315 1.21656 1.18177 1.23740 0.94362 0.91624 1.26015 0.95399 0.96291 1.02267 1.70105 1.22313 1.30256 1.34769 0.85345 0.78184 0.78120 0.79087 1.18289 1.20542 1.20283 1.22433 1.05146 0.93319 0.97311 1.21288 0.79552 0.84384 0.85513 1.90682 1.41239 1.28660 1.84553 0.93495 0.94515 0.91181 0.91152 0.93470 0.93657 0.89316 0.93917 0.91124 0.89873 0.85041 0.89093 0.91547 0.92864 0.91829 0.91041 0.98358 0.98907 0.92691 0.88493 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.91 71.98 0.71 -2.85 16 2 C -0.12 -2.80 5.82 30.60 0.18 -2.62 16 3 C -0.13 -2.67 4.64 30.60 0.14 -2.52 16 4 C 0.15 2.42 2.87 44.99 0.13 2.55 16 5 H 0.11 1.25 8.07 -2.39 -0.02 1.23 16 6 C -0.16 -2.28 9.20 71.98 0.66 -1.62 16 7 N -0.61 -10.56 2.29 -793.80 -1.81 -12.38 16 8 C 0.11 1.27 6.66 86.82 0.58 1.85 16 9 C -0.09 -1.16 3.65 -10.48 -0.04 -1.19 16 10 H 0.18 0.87 8.14 -2.39 -0.02 0.85 16 11 C 0.45 11.41 7.22 71.23 0.51 11.92 16 12 O -0.53 -16.12 13.72 21.95 0.30 -15.82 16 13 O -0.35 -10.52 10.11 -51.34 -0.52 -11.04 16 14 C 0.08 2.92 5.47 71.98 0.39 3.32 16 15 C -0.09 -3.83 5.53 30.60 0.17 -3.66 16 16 C 0.03 1.35 4.97 29.85 0.15 1.50 16 17 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 18 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 19 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 20 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 21 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 C -0.14 -2.24 6.40 30.59 0.20 -2.04 16 26 C 0.50 11.49 7.39 87.90 0.65 12.14 16 27 O -0.57 -18.02 15.07 -3.02 -0.05 -18.06 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.36 6.15 -2.39 -0.01 1.34 16 33 H 0.04 1.24 6.65 -2.39 -0.02 1.22 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 0.89 6.77 -2.39 -0.02 0.88 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.09 1.27 6.98 -2.39 -0.02 1.26 16 40 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 41 H 0.05 2.04 8.13 -2.39 -0.02 2.02 16 42 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.10 1.93 7.81 -2.39 -0.02 1.91 16 48 H 0.16 1.29 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -76.04 388.37 6.28 -69.76 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.92 Total: 11.42 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.13 Total: -13.25 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.53 Total: -69.08 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -0.26 Total: -44.92 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -76.04 6.28 -69.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919585157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.935 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds