Wall clock time and date at job start Fri Apr 10 2020 22:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47345 * 2 1 4 4 C 1.53003 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47268 * 54.99472 * 4 3 2 6 6 C 1.52997 * 109.47164 * 174.99886 * 4 3 2 7 7 N 1.46501 * 109.46826 * 294.99794 * 4 3 2 8 8 C 1.46762 * 124.35172 * 120.00071 * 7 4 3 9 9 C 1.54474 * 105.47750 * 162.95889 * 8 7 4 10 10 H 1.08998 * 110.97420 * 143.57122 * 9 8 7 11 11 C 1.50696 * 110.97434 * 267.30303 * 9 8 7 12 12 O 1.20833 * 119.99655 * 356.90205 * 11 9 8 13 13 O 1.34222 * 120.00432 * 177.18472 * 11 9 8 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 9 15 15 C 1.53006 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46714 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46894 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99811 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00139 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99712 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46914 * 60.00184 * 21 19 17 23 23 H 1.48496 * 109.47054 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47310 * 299.99898 * 21 19 17 25 25 C 1.54635 * 101.79462 * 25.43492 * 9 8 7 26 26 C 1.34411 * 124.34897 * 299.97581 * 7 4 3 27 27 O 1.21283 * 124.94538 * 0.46069 * 26 7 4 28 28 H 1.09000 * 109.47499 * 59.99837 * 1 2 3 29 29 H 1.08998 * 109.47642 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46862 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.46761 * 239.99493 * 2 1 3 32 32 H 1.09007 * 109.47141 * 120.00090 * 2 1 3 33 33 H 1.08992 * 109.47087 * 59.99867 * 3 2 1 34 34 H 1.09003 * 109.46779 * 299.99745 * 3 2 1 35 35 H 1.09002 * 109.46642 * 299.99649 * 6 4 3 36 36 H 1.08997 * 109.46891 * 59.99465 * 6 4 3 37 37 H 1.09001 * 109.46804 * 179.97438 * 6 4 3 38 38 H 1.09002 * 110.24544 * 43.96002 * 8 7 4 39 39 H 1.08997 * 110.24999 * 281.96590 * 8 7 4 40 40 H 1.08997 * 109.47380 * 299.99656 * 14 13 11 41 41 H 1.08997 * 109.47403 * 60.00337 * 14 13 11 42 42 H 1.08997 * 109.47361 * 299.99753 * 15 14 13 43 43 H 1.08997 * 109.47194 * 60.00322 * 15 14 13 44 44 H 1.08997 * 109.47366 * 299.99641 * 16 15 14 45 45 H 1.08997 * 109.47587 * 60.00427 * 16 15 14 46 46 H 0.96998 * 120.00042 * 179.97438 * 20 19 17 47 47 H 1.09002 * 110.48715 * 93.86596 * 25 9 8 48 48 H 1.08998 * 110.48386 * 216.50101 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0800 2.8794 -0.1264 7 7 4.0588 0.8585 1.2509 8 6 4.9060 -0.3372 1.3316 9 6 5.5138 -0.3167 2.7516 10 1 5.5985 -1.3259 3.1543 11 6 6.8518 0.3766 2.7557 12 8 7.3291 0.7746 1.7194 13 8 7.5160 0.5470 3.9095 14 6 8.8018 1.2176 3.8373 15 6 9.4033 1.3197 5.2404 16 6 10.7579 2.0269 5.1643 17 6 11.3507 2.1270 6.5462 18 1 10.8146 1.7266 7.3940 19 6 12.5769 2.7306 6.7283 20 7 13.2294 3.2185 5.6960 21 14 13.3113 2.8552 8.4414 22 1 13.4957 1.4922 9.0013 23 1 14.6261 3.5415 8.3676 24 1 12.3962 3.6305 9.3171 25 6 4.4626 0.5048 3.5335 26 6 3.7893 1.3493 2.4729 27 8 3.1056 2.3264 2.6938 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7163 3.3138 -1.0576 36 1 3.7170 3.4687 0.7156 37 1 5.1700 2.8793 -0.1264 38 1 5.6963 -0.2907 0.5824 39 1 4.3049 -1.2355 1.1915 40 1 9.4730 0.6481 3.1945 41 1 8.6672 2.2182 3.4264 42 1 8.7321 1.8895 5.8829 43 1 9.5379 0.3194 5.6517 44 1 11.4295 1.4575 4.5217 45 1 10.6230 3.0273 4.7532 46 1 14.0919 3.6435 5.8242 47 1 3.7395 -0.1567 4.0107 48 1 4.9486 1.1387 4.2752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919585158.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:30 Heat of formation + Delta-G solvation = -151.547951 kcal Electronic energy + Delta-G solvation = -26129.499014 eV Core-core repulsion = 22376.466292 eV Total energy + Delta-G solvation = -3753.032722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34776 -39.90374 -36.95903 -36.68885 -35.84530 -34.03690 -33.19939 -31.74383 -30.36047 -28.06637 -27.18645 -26.95498 -24.49932 -22.91292 -22.76098 -21.73266 -20.56678 -20.21072 -19.16089 -17.96050 -17.12414 -16.93427 -16.41491 -16.18594 -15.53963 -15.41502 -15.13495 -14.49956 -14.35566 -14.22189 -14.06209 -13.81499 -13.45698 -13.22423 -13.01965 -12.88902 -12.42661 -12.26662 -12.21997 -12.12366 -12.03211 -12.01988 -11.80812 -11.74723 -11.25650 -11.00947 -10.99655 -10.97262 -10.71104 -10.67665 -10.44977 -10.41243 -9.80413 -9.75917 -9.53198 -9.19942 -8.94324 -8.40097 -6.04929 -4.08212 2.15069 2.37303 2.62145 2.75483 3.31648 3.36049 3.38511 3.89651 3.98147 4.35603 4.40860 4.44686 4.59865 4.67274 4.70162 4.91674 4.95408 5.02185 5.13496 5.18441 5.24227 5.30922 5.33318 5.38934 5.44524 5.48102 5.52082 5.52669 5.56316 5.59406 5.67983 5.80484 5.86996 5.95791 6.00644 6.06323 6.39198 6.43111 6.49801 6.77541 6.89375 6.94485 7.57514 7.68355 7.78110 7.92896 7.97169 8.33712 8.97699 9.56121 11.06420 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.031569 B = 0.002199 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.721808 B =12727.165194 C =12811.060557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.137 4.137 4 C 0.159 3.841 5 H 0.088 0.912 6 C -0.170 4.170 7 N -0.610 5.610 8 C 0.113 3.887 9 C -0.099 4.099 10 H 0.136 0.864 11 C 0.463 3.537 12 O -0.503 6.503 13 O -0.353 6.353 14 C 0.069 3.931 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.147 4.147 26 C 0.518 3.482 27 O -0.524 6.524 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.262 0.738 47 H 0.119 0.881 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.612 -10.127 -12.747 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.175 4.175 4 C 0.057 3.943 5 H 0.106 0.894 6 C -0.228 4.228 7 N -0.345 5.345 8 C -0.010 4.010 9 C -0.118 4.118 10 H 0.154 0.846 11 C 0.305 3.695 12 O -0.391 6.391 13 O -0.270 6.270 14 C -0.004 4.004 15 C -0.147 4.147 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.187 4.187 26 C 0.306 3.694 27 O -0.400 6.400 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.137 0.863 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -23.644 -9.336 -13.053 28.576 hybrid contribution 0.773 0.089 0.768 1.093 sum -22.870 -9.247 -12.285 27.559 Atomic orbital electron populations 1.21757 0.95853 1.01453 1.01838 1.21487 0.95875 0.96698 1.01743 1.22063 0.94307 0.97484 1.03667 1.20995 0.93798 0.94772 0.84708 0.89386 1.22184 1.01902 0.95841 1.02876 1.48332 1.51121 1.28691 1.06365 1.22095 0.94482 0.88217 0.96242 1.21962 0.89985 1.01939 0.97941 0.84594 1.23102 0.86769 0.77207 0.82392 1.90670 1.68221 1.46703 1.33541 1.86476 1.34964 1.71358 1.34164 1.23553 0.79156 0.96194 1.01500 1.21774 0.99219 1.01900 0.91767 1.19049 0.89037 0.95435 0.97774 1.21127 1.03654 1.38089 0.93204 0.92456 1.25035 0.97065 0.95377 0.97009 1.69953 1.14770 1.38796 1.29811 0.86595 0.78304 0.78293 0.84446 1.20177 1.21261 1.20159 1.22419 0.98158 0.99889 0.98258 1.20773 0.80243 0.84254 0.84175 1.90708 1.39421 1.26200 1.83689 0.92818 0.92878 0.92745 0.92236 0.92146 0.90115 0.90891 0.91518 0.91050 0.91982 0.88358 0.89624 0.91382 0.91505 0.92085 0.92066 0.96243 0.96248 0.92819 0.86259 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.15 0.37 -0.60 16 2 C -0.12 -0.81 5.82 -26.73 -0.16 -0.97 16 3 C -0.14 -1.11 4.64 -26.73 -0.12 -1.23 16 4 C 0.16 1.40 2.87 -67.93 -0.19 1.20 16 5 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 6 C -0.17 -1.73 9.20 37.16 0.34 -1.39 16 7 N -0.61 -5.85 2.28 -164.81 -0.38 -6.23 16 8 C 0.11 0.85 6.65 -3.13 -0.02 0.83 16 9 C -0.10 -0.83 3.65 -90.14 -0.33 -1.16 16 10 H 0.14 0.71 8.14 -51.93 -0.42 0.28 16 11 C 0.46 6.25 7.22 36.00 0.26 6.51 16 12 O -0.50 -8.15 15.26 -18.76 -0.29 -8.43 16 13 O -0.35 -5.46 10.12 -39.24 -0.40 -5.86 16 14 C 0.07 1.23 5.47 37.16 0.20 1.43 16 15 C -0.11 -2.21 5.53 -26.73 -0.15 -2.36 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 21 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.15 -1.32 6.41 -26.69 -0.17 -1.49 16 26 C 0.52 6.08 7.40 -10.82 -0.08 6.00 16 27 O -0.52 -7.96 15.07 5.56 0.08 -7.88 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 7.75 -51.92 -0.40 0.03 16 33 H 0.08 0.86 6.63 -51.93 -0.34 0.52 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.89 6.80 -51.93 -0.35 0.54 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.84 6.98 -51.93 -0.36 0.48 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 41 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 47 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.11 1.19 7.82 -51.93 -0.41 0.78 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -33.44 391.53 -8.55 -41.99 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -8.59 Total: -3.78 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.60 Total: -6.19 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.36 Total: -32.24 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.60 Total: -22.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.44 -8.55 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919585158.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.558 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds