Wall clock time and date at job start Fri Apr 10 2020 22:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47345 * 2 1 4 4 C 1.53003 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47268 * 54.99472 * 4 3 2 6 6 C 1.52997 * 109.47164 * 174.99886 * 4 3 2 7 7 N 1.46501 * 109.46826 * 294.99794 * 4 3 2 8 8 C 1.46762 * 124.35172 * 120.00071 * 7 4 3 9 9 C 1.54474 * 105.47750 * 162.95889 * 8 7 4 10 10 H 1.08998 * 110.97420 * 143.57122 * 9 8 7 11 11 C 1.50696 * 110.97434 * 267.30303 * 9 8 7 12 12 O 1.20833 * 119.99655 * 356.90205 * 11 9 8 13 13 O 1.34222 * 120.00432 * 177.18472 * 11 9 8 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 9 15 15 C 1.53006 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46714 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46894 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99811 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00139 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99712 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46914 * 60.00184 * 21 19 17 23 23 H 1.48496 * 109.47054 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47310 * 299.99898 * 21 19 17 25 25 C 1.54635 * 101.79462 * 25.43492 * 9 8 7 26 26 C 1.34411 * 124.34897 * 299.97581 * 7 4 3 27 27 O 1.21283 * 124.94538 * 0.46069 * 26 7 4 28 28 H 1.09000 * 109.47499 * 59.99837 * 1 2 3 29 29 H 1.08998 * 109.47642 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46862 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.46761 * 239.99493 * 2 1 3 32 32 H 1.09007 * 109.47141 * 120.00090 * 2 1 3 33 33 H 1.08992 * 109.47087 * 59.99867 * 3 2 1 34 34 H 1.09003 * 109.46779 * 299.99745 * 3 2 1 35 35 H 1.09002 * 109.46642 * 299.99649 * 6 4 3 36 36 H 1.08997 * 109.46891 * 59.99465 * 6 4 3 37 37 H 1.09001 * 109.46804 * 179.97438 * 6 4 3 38 38 H 1.09002 * 110.24544 * 43.96002 * 8 7 4 39 39 H 1.08997 * 110.24999 * 281.96590 * 8 7 4 40 40 H 1.08997 * 109.47380 * 299.99656 * 14 13 11 41 41 H 1.08997 * 109.47403 * 60.00337 * 14 13 11 42 42 H 1.08997 * 109.47361 * 299.99753 * 15 14 13 43 43 H 1.08997 * 109.47194 * 60.00322 * 15 14 13 44 44 H 1.08997 * 109.47366 * 299.99641 * 16 15 14 45 45 H 1.08997 * 109.47587 * 60.00427 * 16 15 14 46 46 H 0.96998 * 120.00042 * 179.97438 * 20 19 17 47 47 H 1.09002 * 110.48715 * 93.86596 * 25 9 8 48 48 H 1.08998 * 110.48386 * 216.50101 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0800 2.8794 -0.1264 7 7 4.0588 0.8585 1.2509 8 6 4.9060 -0.3372 1.3316 9 6 5.5138 -0.3167 2.7516 10 1 5.5985 -1.3259 3.1543 11 6 6.8518 0.3766 2.7557 12 8 7.3291 0.7746 1.7194 13 8 7.5160 0.5470 3.9095 14 6 8.8018 1.2176 3.8373 15 6 9.4033 1.3197 5.2404 16 6 10.7579 2.0269 5.1643 17 6 11.3507 2.1270 6.5462 18 1 10.8146 1.7266 7.3940 19 6 12.5769 2.7306 6.7283 20 7 13.2294 3.2185 5.6960 21 14 13.3113 2.8552 8.4414 22 1 13.4957 1.4922 9.0013 23 1 14.6261 3.5415 8.3676 24 1 12.3962 3.6305 9.3171 25 6 4.4626 0.5048 3.5335 26 6 3.7893 1.3493 2.4729 27 8 3.1056 2.3264 2.6938 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7163 3.3138 -1.0576 36 1 3.7170 3.4687 0.7156 37 1 5.1700 2.8793 -0.1264 38 1 5.6963 -0.2907 0.5824 39 1 4.3049 -1.2355 1.1915 40 1 9.4730 0.6481 3.1945 41 1 8.6672 2.2182 3.4264 42 1 8.7321 1.8895 5.8829 43 1 9.5379 0.3194 5.6517 44 1 11.4295 1.4575 4.5217 45 1 10.6230 3.0273 4.7532 46 1 14.0919 3.6435 5.8242 47 1 3.7395 -0.1567 4.0107 48 1 4.9486 1.1387 4.2752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919585158.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:29 Heat of formation + Delta-G solvation = -169.942836 kcal Electronic energy + Delta-G solvation = -26130.296676 eV Core-core repulsion = 22376.466292 eV Total energy + Delta-G solvation = -3753.830384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.25255 -40.96445 -38.09548 -37.56943 -36.70727 -35.94927 -33.91629 -33.60079 -31.17603 -29.10025 -28.71222 -27.61533 -25.85343 -24.36226 -23.51987 -22.32081 -22.18499 -21.36894 -19.98668 -18.96342 -18.59228 -17.92239 -17.75621 -17.58673 -16.51005 -16.47077 -16.25552 -15.83222 -15.62561 -15.04424 -14.87293 -14.75341 -14.48422 -14.18072 -14.12252 -13.86605 -13.74291 -13.59159 -13.49954 -13.19070 -12.84656 -12.82730 -12.77439 -12.67448 -12.53860 -12.49130 -12.34923 -12.07978 -11.91647 -11.75972 -11.63510 -11.54094 -11.42972 -11.39637 -11.22336 -10.66255 -10.57544 -9.70303 -8.22380 -6.34068 1.07956 1.40933 1.44493 1.48270 1.52507 1.60966 2.00668 2.40923 3.11396 3.18013 3.27087 3.53897 3.70358 3.81115 3.97867 4.01876 4.03616 4.09937 4.29567 4.31307 4.39757 4.41543 4.54327 4.58366 4.62280 4.69651 4.74213 4.77585 4.78303 4.80673 4.89966 4.90734 4.99466 5.03323 5.06857 5.19220 5.26235 5.32293 5.41176 5.45784 5.51469 5.62419 5.68439 5.79112 6.13526 6.18015 6.63228 6.81782 7.13700 7.35462 8.89536 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.031569 B = 0.002199 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.721808 B =12727.165194 C =12811.060557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.130 4.130 4 C 0.154 3.846 5 H 0.113 0.887 6 C -0.166 4.166 7 N -0.609 5.609 8 C 0.112 3.888 9 C -0.086 4.086 10 H 0.184 0.816 11 C 0.457 3.543 12 O -0.535 6.535 13 O -0.353 6.353 14 C 0.080 3.920 15 C -0.094 4.094 16 C 0.025 3.975 17 C -0.544 4.544 18 H 0.066 0.934 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.267 1.267 25 C -0.141 4.141 26 C 0.503 3.497 27 O -0.571 6.571 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.072 0.928 44 H -0.002 1.002 45 H -0.007 1.007 46 H 0.264 0.736 47 H 0.157 0.843 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.841 -12.786 -12.403 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.168 4.168 4 C 0.053 3.947 5 H 0.131 0.869 6 C -0.224 4.224 7 N -0.342 5.342 8 C -0.010 4.010 9 C -0.104 4.104 10 H 0.201 0.799 11 C 0.301 3.699 12 O -0.424 6.424 13 O -0.269 6.269 14 C 0.006 3.994 15 C -0.131 4.131 16 C -0.012 4.012 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.181 4.181 26 C 0.292 3.708 27 O -0.451 6.451 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.150 0.850 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.017 0.983 45 H 0.011 0.989 46 H 0.073 0.927 47 H 0.175 0.825 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.881 -12.033 -12.724 30.426 hybrid contribution 1.127 0.944 0.560 1.573 sum -23.754 -11.089 -12.164 28.899 Atomic orbital electron populations 1.21753 0.95749 1.01980 1.01396 1.21461 0.95934 0.95460 1.02454 1.21973 0.93651 0.98543 1.02631 1.21144 0.94355 0.93945 0.85299 0.86867 1.22145 1.00537 0.97110 1.02642 1.48493 1.50591 1.29117 1.06043 1.22374 0.94571 0.88827 0.95238 1.22205 0.86152 1.03184 0.98900 0.79893 1.24259 0.87998 0.76495 0.81159 1.90666 1.69315 1.48011 1.34406 1.86465 1.33748 1.71136 1.35550 1.23098 0.80671 0.95943 0.99686 1.21452 0.96570 1.01700 0.93403 1.18936 0.91556 0.94285 0.96419 1.21599 1.04153 1.38019 0.94373 0.91569 1.26031 0.97639 0.94881 1.01490 1.70094 1.15246 1.39688 1.32334 0.85435 0.77362 0.78849 0.79016 1.18853 1.20995 1.19166 1.22457 0.98638 0.99868 0.97157 1.21338 0.79947 0.84008 0.85507 1.90683 1.41649 1.28259 1.84519 0.92423 0.91828 0.94096 0.90501 0.92275 0.93208 0.89890 0.89502 0.94059 0.93846 0.89196 0.85027 0.91514 0.92803 0.91743 0.90963 0.98349 0.98894 0.92700 0.82488 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.28 5.82 30.59 0.18 -1.10 16 3 C -0.13 -1.97 4.64 30.60 0.14 -1.83 16 4 C 0.15 2.53 2.87 44.99 0.13 2.66 16 5 H 0.11 1.31 8.07 -2.38 -0.02 1.29 16 6 C -0.17 -3.49 9.20 71.98 0.66 -2.83 16 7 N -0.61 -10.77 2.28 -793.92 -1.81 -12.59 16 8 C 0.11 1.31 6.65 86.83 0.58 1.88 16 9 C -0.09 -1.16 3.65 -10.48 -0.04 -1.20 16 10 H 0.18 0.86 8.14 -2.39 -0.02 0.84 16 11 C 0.46 11.71 7.22 71.23 0.51 12.22 16 12 O -0.53 -17.15 15.26 21.94 0.33 -16.82 16 13 O -0.35 -10.54 10.12 -51.34 -0.52 -11.06 16 14 C 0.08 2.88 5.47 71.98 0.39 3.27 16 15 C -0.09 -3.82 5.53 30.60 0.17 -3.65 16 16 C 0.03 1.33 4.97 29.85 0.15 1.47 16 17 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 18 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 19 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 20 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 21 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 C -0.14 -2.22 6.41 30.62 0.20 -2.02 16 26 C 0.50 11.56 7.40 87.93 0.65 12.21 16 27 O -0.57 -18.09 15.07 -3.04 -0.05 -18.14 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.68 7.75 -2.38 -0.02 0.66 16 33 H 0.05 1.09 6.63 -2.39 -0.02 1.08 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.11 6.80 -2.39 -0.02 1.10 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.30 6.98 -2.39 -0.02 1.28 16 39 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 41 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 42 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 16 45 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.10 1.94 7.82 -2.39 -0.02 1.92 16 Total: -1.00 -76.51 391.53 6.31 -70.20 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.91 Total: 9.06 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 5.13 Total: -10.00 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.53 Total: -69.24 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.23 Total: -46.01 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -76.51 6.31 -70.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919585158.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.745 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds