Wall clock time and date at job start Fri Apr 10 2020 22:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.53006 * 109.46846 * 185.00166 * 4 3 2 7 7 N 1.46498 * 109.47465 * 65.00143 * 4 3 2 8 8 C 1.46762 * 124.34858 * 239.72709 * 7 4 3 9 9 C 1.54656 * 105.38558 * 162.85310 * 8 7 4 10 10 H 1.09004 * 111.22247 * 267.57962 * 9 8 7 11 11 C 1.50696 * 110.82732 * 143.77571 * 9 8 7 12 12 O 1.20827 * 119.99614 * 6.35014 * 11 9 8 13 13 O 1.34222 * 120.00456 * 186.34961 * 11 9 8 14 14 C 1.45200 * 117.00372 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.46994 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46839 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47126 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00182 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00018 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99980 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46956 * 60.00231 * 21 19 17 23 23 H 1.48498 * 109.47034 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.46986 * 300.00218 * 21 19 17 25 25 C 1.54626 * 101.68352 * 25.76282 * 9 8 7 26 26 C 1.34414 * 124.35286 * 60.02156 * 7 4 3 27 27 O 1.21289 * 124.93990 * 0.43246 * 26 7 4 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 32 32 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 35 35 H 1.09001 * 109.47241 * 59.99481 * 6 4 3 36 36 H 1.08996 * 109.46751 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.46824 * 299.99583 * 6 4 3 38 38 H 1.09004 * 110.24420 * 281.98018 * 8 7 4 39 39 H 1.08996 * 110.24836 * 43.97801 * 8 7 4 40 40 H 1.08997 * 109.46691 * 300.00223 * 14 13 11 41 41 H 1.09004 * 109.46905 * 60.00208 * 14 13 11 42 42 H 1.08994 * 109.47149 * 299.99929 * 15 14 13 43 43 H 1.08995 * 109.47047 * 60.00528 * 15 14 13 44 44 H 1.08996 * 109.47204 * 300.00759 * 16 15 14 45 45 H 1.09004 * 109.46839 * 60.00376 * 16 15 14 46 46 H 0.97001 * 120.00010 * 180.02562 * 20 19 17 47 47 H 1.08996 * 110.49086 * 216.31342 * 25 9 8 48 48 H 1.08998 * 110.48692 * 93.66445 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0801 2.8794 0.1251 7 7 4.0578 0.8588 -1.2527 8 6 4.9097 -0.3335 -1.3340 9 6 4.7994 -0.8175 -2.7987 10 1 4.0060 -1.5565 -2.9114 11 6 6.1168 -1.3668 -3.2822 12 8 7.0397 -1.4883 -2.5119 13 8 6.2649 -1.7211 -4.5683 14 6 7.5613 -2.2419 -4.9636 15 6 7.5388 -2.5891 -6.4535 16 6 8.9051 -3.1373 -6.8701 17 6 8.8828 -3.4798 -8.3375 18 1 7.9840 -3.3219 -8.9153 19 6 10.0096 -3.9948 -8.9424 20 7 11.1038 -4.1876 -8.2387 21 14 9.9821 -4.4188 -10.7615 22 1 9.6782 -3.1975 -11.5499 23 1 11.3082 -4.9509 -11.1658 24 1 8.9384 -5.4441 -11.0150 25 6 4.4427 0.4941 -3.5359 26 6 3.7875 1.3499 -2.4744 27 8 3.1161 2.3359 -2.6937 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7171 3.3136 1.0567 36 1 5.1701 2.8792 0.1251 37 1 3.7165 3.4689 -0.7165 38 1 5.9418 -0.0767 -1.0955 39 1 4.5455 -1.1043 -0.6548 40 1 8.3274 -1.4893 -4.7770 41 1 7.7843 -3.1386 -4.3853 42 1 6.7727 -3.3417 -6.6396 43 1 7.3156 -1.6927 -7.0321 44 1 9.6709 -2.3843 -6.6840 45 1 9.1287 -4.0336 -6.2916 46 1 11.8967 -4.5496 -8.6644 47 1 3.7459 0.2966 -4.3504 48 1 5.3442 0.9773 -3.9125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919585159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:32 Heat of formation + Delta-G solvation = -151.716071 kcal Electronic energy + Delta-G solvation = -25796.614669 eV Core-core repulsion = 22043.574657 eV Total energy + Delta-G solvation = -3753.040012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32822 -40.05803 -37.00859 -36.76209 -35.91403 -34.05430 -33.26873 -31.76447 -30.44888 -28.12277 -27.18656 -27.03355 -24.48042 -22.95536 -22.79552 -21.77198 -20.59693 -20.21977 -19.23341 -17.96099 -17.14646 -16.96045 -16.46487 -16.15434 -15.88886 -15.27694 -15.10500 -14.50417 -14.45124 -14.27380 -14.08927 -14.01420 -13.58236 -13.23739 -13.15738 -12.99890 -12.44553 -12.33466 -12.24862 -12.19878 -12.07230 -11.99885 -11.79403 -11.63447 -11.32347 -11.08765 -11.03430 -10.98525 -10.75435 -10.69339 -10.52313 -10.47292 -9.87308 -9.77951 -9.54288 -9.21223 -9.02209 -8.41232 -6.06168 -4.09442 2.09738 2.31239 2.40599 2.81152 3.30875 3.35363 3.37811 3.83668 3.97668 4.31188 4.40041 4.47892 4.49603 4.60252 4.64352 4.85077 4.88508 4.97014 5.08169 5.12855 5.22419 5.28689 5.29764 5.33448 5.42004 5.47793 5.49133 5.50423 5.53114 5.55779 5.57253 5.77811 5.82822 5.90224 5.93656 5.96986 6.30186 6.38654 6.48103 6.74457 6.79452 6.92854 7.56109 7.66816 7.72899 7.88593 7.91667 8.32485 8.96518 9.55023 11.05140 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.028698 B = 0.002070 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.431654 B =13524.454111 C =13640.388701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.157 3.843 5 H 0.089 0.911 6 C -0.169 4.169 7 N -0.614 5.614 8 C 0.115 3.885 9 C -0.097 4.097 10 H 0.129 0.871 11 C 0.470 3.530 12 O -0.505 6.505 13 O -0.352 6.352 14 C 0.068 3.932 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.144 4.144 26 C 0.523 3.477 27 O -0.524 6.524 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.262 0.738 47 H 0.117 0.883 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 9.662 19.545 28.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.055 3.945 5 H 0.107 0.893 6 C -0.227 4.227 7 N -0.349 5.349 8 C -0.008 4.008 9 C -0.117 4.117 10 H 0.147 0.853 11 C 0.311 3.689 12 O -0.394 6.394 13 O -0.268 6.268 14 C -0.005 4.005 15 C -0.147 4.147 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.184 4.184 26 C 0.311 3.689 27 O -0.400 6.400 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.135 0.865 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.246 10.099 19.689 28.680 hybrid contribution 0.374 -0.486 -0.913 1.100 sum -17.872 9.614 18.776 27.647 Atomic orbital electron populations 1.21754 0.95770 1.01586 1.01803 1.21493 0.95991 0.96587 1.01870 1.22059 0.94160 0.97623 1.03671 1.21025 0.94086 0.94664 0.84739 0.89287 1.22188 1.01473 0.95959 1.03097 1.48424 1.50925 1.29129 1.06424 1.22067 0.96629 0.87396 0.94672 1.21905 0.95039 0.98853 0.95857 0.85276 1.22918 0.89412 0.75134 0.81390 1.90684 1.41979 1.50643 1.56077 1.86497 1.39759 1.73599 1.26922 1.23577 0.79977 0.98406 0.98524 1.21777 1.02183 1.01208 0.89530 1.19047 0.89447 0.96228 0.96559 1.21124 0.97952 1.42675 0.94341 0.92461 1.25032 0.95513 0.95613 0.98313 1.69952 1.02240 1.44982 1.36159 0.86599 0.77148 0.78809 0.85105 1.20163 1.21264 1.20167 1.22354 1.03957 0.93593 0.98535 1.20693 0.79685 0.84504 0.84041 1.90711 1.39397 1.26134 1.83741 0.92779 0.92839 0.92716 0.92051 0.92203 0.90850 0.90107 0.91420 0.92305 0.90880 0.89006 0.89305 0.91358 0.91330 0.92066 0.92059 0.96235 0.96238 0.92813 0.86459 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.12 -0.80 5.82 -26.74 -0.16 -0.95 16 3 C -0.14 -0.98 4.64 -26.73 -0.12 -1.11 16 4 C 0.16 1.14 2.86 -67.93 -0.19 0.94 16 5 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 6 C -0.17 -1.30 9.20 37.16 0.34 -0.95 16 7 N -0.61 -5.19 2.28 -164.73 -0.38 -5.57 16 8 C 0.12 0.90 6.61 -3.03 -0.02 0.88 16 9 C -0.10 -0.83 3.67 -90.05 -0.33 -1.17 16 10 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 11 C 0.47 5.99 7.18 36.00 0.26 6.25 16 12 O -0.51 -7.73 15.32 -18.75 -0.29 -8.02 16 13 O -0.35 -5.20 10.21 -39.24 -0.40 -5.60 16 14 C 0.07 1.16 5.47 37.16 0.20 1.37 16 15 C -0.11 -2.17 5.53 -26.73 -0.15 -2.31 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.47 9.11 -34.45 -0.31 -14.79 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.14 -1.31 6.39 -26.74 -0.17 -1.48 16 26 C 0.52 5.53 7.39 -10.86 -0.08 5.45 16 27 O -0.52 -7.18 15.07 5.55 0.08 -7.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 7.75 -51.93 -0.40 0.05 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.79 6.65 -51.93 -0.35 0.44 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.73 6.77 -51.93 -0.35 0.38 16 38 H 0.09 0.83 7.07 -51.93 -0.37 0.46 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 41 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.11 1.06 7.89 -51.93 -0.41 0.65 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -32.10 391.74 -8.56 -40.67 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -8.60 Total: -4.35 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.60 Total: -6.49 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.36 Total: -31.32 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.60 Total: -20.72 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.10 -8.56 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919585159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.049 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds