Wall clock time and date at job start Fri Apr 10 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.53006 * 109.46846 * 185.00166 * 4 3 2 7 7 N 1.46498 * 109.47465 * 65.00143 * 4 3 2 8 8 C 1.46762 * 124.34858 * 239.72709 * 7 4 3 9 9 C 1.54656 * 105.38558 * 162.85310 * 8 7 4 10 10 H 1.09004 * 111.22247 * 267.57962 * 9 8 7 11 11 C 1.50696 * 110.82732 * 143.77571 * 9 8 7 12 12 O 1.20827 * 119.99614 * 6.35014 * 11 9 8 13 13 O 1.34222 * 120.00456 * 186.34961 * 11 9 8 14 14 C 1.45200 * 117.00372 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.46994 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46839 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47126 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00182 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00018 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99980 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46956 * 60.00231 * 21 19 17 23 23 H 1.48498 * 109.47034 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.46986 * 300.00218 * 21 19 17 25 25 C 1.54626 * 101.68352 * 25.76282 * 9 8 7 26 26 C 1.34414 * 124.35286 * 60.02156 * 7 4 3 27 27 O 1.21289 * 124.93990 * 0.43246 * 26 7 4 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 32 32 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 35 35 H 1.09001 * 109.47241 * 59.99481 * 6 4 3 36 36 H 1.08996 * 109.46751 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.46824 * 299.99583 * 6 4 3 38 38 H 1.09004 * 110.24420 * 281.98018 * 8 7 4 39 39 H 1.08996 * 110.24836 * 43.97801 * 8 7 4 40 40 H 1.08997 * 109.46691 * 300.00223 * 14 13 11 41 41 H 1.09004 * 109.46905 * 60.00208 * 14 13 11 42 42 H 1.08994 * 109.47149 * 299.99929 * 15 14 13 43 43 H 1.08995 * 109.47047 * 60.00528 * 15 14 13 44 44 H 1.08996 * 109.47204 * 300.00759 * 16 15 14 45 45 H 1.09004 * 109.46839 * 60.00376 * 16 15 14 46 46 H 0.97001 * 120.00010 * 180.02562 * 20 19 17 47 47 H 1.08996 * 110.49086 * 216.31342 * 25 9 8 48 48 H 1.08998 * 110.48692 * 93.66445 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0801 2.8794 0.1251 7 7 4.0578 0.8588 -1.2527 8 6 4.9097 -0.3335 -1.3340 9 6 4.7994 -0.8175 -2.7987 10 1 4.0060 -1.5565 -2.9114 11 6 6.1168 -1.3668 -3.2822 12 8 7.0397 -1.4883 -2.5119 13 8 6.2649 -1.7211 -4.5683 14 6 7.5613 -2.2419 -4.9636 15 6 7.5388 -2.5891 -6.4535 16 6 8.9051 -3.1373 -6.8701 17 6 8.8828 -3.4798 -8.3375 18 1 7.9840 -3.3219 -8.9153 19 6 10.0096 -3.9948 -8.9424 20 7 11.1038 -4.1876 -8.2387 21 14 9.9821 -4.4188 -10.7615 22 1 9.6782 -3.1975 -11.5499 23 1 11.3082 -4.9509 -11.1658 24 1 8.9384 -5.4441 -11.0150 25 6 4.4427 0.4941 -3.5359 26 6 3.7875 1.3499 -2.4744 27 8 3.1161 2.3359 -2.6937 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7171 3.3136 1.0567 36 1 5.1701 2.8792 0.1251 37 1 3.7165 3.4689 -0.7165 38 1 5.9418 -0.0767 -1.0955 39 1 4.5455 -1.1043 -0.6548 40 1 8.3274 -1.4893 -4.7770 41 1 7.7843 -3.1386 -4.3853 42 1 6.7727 -3.3417 -6.6396 43 1 7.3156 -1.6927 -7.0321 44 1 9.6709 -2.3843 -6.6840 45 1 9.1287 -4.0336 -6.2916 46 1 11.8967 -4.5496 -8.6644 47 1 3.7459 0.2966 -4.3504 48 1 5.3442 0.9773 -3.9125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919585159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:31 Heat of formation + Delta-G solvation = -168.216392 kcal Electronic energy + Delta-G solvation = -25797.330176 eV Core-core repulsion = 22043.574657 eV Total energy + Delta-G solvation = -3753.755520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.19671 -41.07023 -38.08681 -37.59524 -36.71896 -35.92598 -33.93624 -33.58909 -31.19621 -29.10214 -28.73520 -27.59386 -25.79909 -24.34638 -23.49219 -22.32042 -22.14831 -21.38551 -19.99349 -18.94386 -18.57358 -17.85713 -17.83843 -17.39957 -16.77446 -16.49348 -16.15075 -15.72520 -15.68380 -14.98344 -14.83970 -14.70291 -14.62115 -14.45911 -14.05948 -13.85602 -13.74790 -13.68597 -13.54974 -13.06100 -12.87258 -12.80628 -12.73934 -12.58306 -12.52138 -12.39384 -12.30940 -12.05639 -11.93384 -11.77409 -11.62483 -11.55150 -11.41415 -11.38746 -11.23140 -10.68030 -10.55672 -9.73204 -8.20920 -6.32104 1.06217 1.41595 1.45163 1.46228 1.50133 1.53463 2.00322 2.42017 3.07395 3.13006 3.24763 3.61961 3.67902 3.82347 4.02173 4.03641 4.05371 4.08049 4.12400 4.33550 4.40242 4.44544 4.50573 4.54514 4.59978 4.72228 4.74412 4.78114 4.82327 4.83554 4.90264 4.93487 5.00211 5.04119 5.10156 5.23834 5.27573 5.32087 5.42091 5.45750 5.53232 5.66020 5.66904 5.81689 6.07121 6.20396 6.62414 6.83939 7.10399 7.37318 8.90829 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.028698 B = 0.002070 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.431654 B =13524.454111 C =13640.388701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.151 3.849 5 H 0.116 0.884 6 C -0.166 4.166 7 N -0.607 5.607 8 C 0.118 3.882 9 C -0.083 4.083 10 H 0.161 0.839 11 C 0.472 3.528 12 O -0.530 6.530 13 O -0.352 6.352 14 C 0.078 3.922 15 C -0.095 4.095 16 C 0.025 3.975 17 C -0.543 4.543 18 H 0.065 0.935 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.143 4.143 26 C 0.518 3.482 27 O -0.561 6.561 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.066 0.934 44 H -0.004 1.004 45 H -0.002 1.002 46 H 0.264 0.736 47 H 0.129 0.871 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.843 9.050 20.137 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.050 3.950 5 H 0.133 0.867 6 C -0.224 4.224 7 N -0.340 5.340 8 C -0.005 4.005 9 C -0.102 4.102 10 H 0.178 0.822 11 C 0.315 3.685 12 O -0.420 6.420 13 O -0.268 6.268 14 C 0.005 3.995 15 C -0.133 4.133 16 C -0.012 4.012 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.183 4.183 26 C 0.307 3.693 27 O -0.440 6.440 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.073 0.927 47 H 0.147 0.853 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.741 9.483 20.306 29.866 hybrid contribution 0.831 -0.252 -1.007 1.329 sum -18.910 9.231 19.299 28.553 Atomic orbital electron populations 1.21753 0.95809 1.01854 1.01516 1.21484 0.95972 0.95958 1.02270 1.21991 0.94000 0.98071 1.02871 1.21239 0.94219 0.94665 0.84884 0.86651 1.22155 1.01178 0.96154 1.02892 1.48503 1.50182 1.28997 1.06336 1.22142 0.96115 0.87656 0.94575 1.21978 0.93192 0.99045 0.96025 0.82167 1.23658 0.90490 0.74137 0.80193 1.90685 1.43228 1.51687 1.56388 1.86480 1.38043 1.73810 1.28440 1.23149 0.81180 0.98367 0.96810 1.21457 0.99062 1.01279 0.91466 1.18934 0.91886 0.94815 0.95552 1.21604 0.98316 1.42454 0.95724 0.91699 1.25998 0.95115 0.95478 1.03359 1.70088 1.02975 1.45954 1.38270 0.85469 0.77367 0.78952 0.79075 1.19164 1.21030 1.19016 1.22351 1.03824 0.93468 0.98620 1.20909 0.79312 0.84147 0.84979 1.90696 1.41191 1.27781 1.84373 0.92216 0.92175 0.94004 0.92726 0.90576 0.89513 0.93048 0.89481 0.92634 0.93679 0.90087 0.86424 0.91874 0.91516 0.91337 0.91569 0.98550 0.98387 0.92720 0.85314 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.29 5.82 30.59 0.18 -1.11 16 3 C -0.13 -1.69 4.64 30.59 0.14 -1.55 16 4 C 0.15 1.91 2.86 44.99 0.13 2.03 16 5 H 0.12 0.90 8.07 -2.39 -0.02 0.88 16 6 C -0.17 -2.40 9.20 71.98 0.66 -1.74 16 7 N -0.61 -9.27 2.28 -793.68 -1.81 -11.08 16 8 C 0.12 1.53 6.61 86.89 0.57 2.10 16 9 C -0.08 -1.23 3.67 -10.42 -0.04 -1.27 16 10 H 0.16 1.47 8.14 -2.38 -0.02 1.45 16 11 C 0.47 11.25 7.18 71.23 0.51 11.76 16 12 O -0.53 -15.64 15.32 21.96 0.34 -15.30 16 13 O -0.35 -9.89 10.21 -51.34 -0.52 -10.41 16 14 C 0.08 2.66 5.47 71.98 0.39 3.05 16 15 C -0.10 -3.73 5.53 30.60 0.17 -3.56 16 16 C 0.03 1.29 4.97 29.85 0.15 1.44 16 17 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 18 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 20 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 21 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 C -0.14 -2.40 6.39 30.59 0.20 -2.20 16 26 C 0.52 10.63 7.39 87.90 0.65 11.28 16 27 O -0.56 -15.69 15.07 -3.06 -0.05 -15.73 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.67 7.75 -2.39 -0.02 0.65 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 1.00 6.65 -2.39 -0.02 0.98 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.04 0.92 6.77 -2.39 -0.02 0.90 16 38 H 0.08 1.30 7.07 -2.38 -0.02 1.29 16 39 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 41 H 0.07 2.28 8.13 -2.38 -0.02 2.26 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 46 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 47 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.10 1.92 7.89 -2.39 -0.02 1.91 16 Total: -1.00 -70.51 391.74 6.30 -64.21 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.91 Total: 8.88 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 5.12 Total: -10.29 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -1.53 Total: -66.89 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.23 Total: -41.44 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.51 6.30 -64.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919585159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.006 kcal (2) G-P(sol) polarization free energy of solvation -70.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds